Rv3596c - c.6C>T
Drug resistance types
37 Sensitive
2 RR-TB
110 HR-TB
12 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
46 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 12 |
| 107 | |
| lineage4 | 45 |
| lineage4.1.1.3 | 1 |
| lineage2.2 | 3 |
| lineage2.2.1 | 10 |
| lineage4;lineage1.1.2 | 1 |
| lineage4.8;La3 | 1 |
| lineage2.1 | 2 |
| lineage4.3.4.2.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.1.2.1 | 5 |
| lineage4;lineage1.1 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage4.9;lineage2.1 | 1 |
| lineage3.1 | 2 |
| lineage4.1 | 1 |
| lineage4.3.4 | 2 |
| lineage1.1.3.1 | 1 |
| lineage4.3.2 | 1 |
| lineage2.2.2 | 1 |
| La3 | 1 |
| lineage4.3.3 | 2 |
| lineage4.4.1.1 | 2 |
| lineage2 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage4.1.1 | 1 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage3;lineage2.1 | 1 |
| lineage4.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 212 |
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675284 | HR-TB | lineage4.9 | None | ERR181887 | HR-TB | None | ERR176643 | HR-TB | None | ERR176651 | HR-TB | None | SRR3675456 | HR-TB | None | SRR3675383 | HR-TB | None | ERR212033 | HR-TB | None | ERR4816999 | Other | None | ERR212001 | HR-TB | None | SRR3675555 | HR-TB | None | SRR3742665 | HR-TB | None | SRR3675558 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | ERR4816466 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR212123 | Other | None | ERR212138 | HR-TB | lineage4 | None | ERR4816656 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4816738 | Sensitive | lineage4.9 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR234659 | HR-TB | None | ERR775794 | MDR-TB | lineage2.1 | th | ERR4818929 | HR-TB | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | ERR4818615 | Other | None | SRR5341387 | Other | lineage4 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | SRR5341425 | Other | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341302 | HR-TB | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | ERR2516027 | HR-TB | lineage4.4.1.1.1 | None | SRR5341467 | Other | lineage4 | None | SRR5341333 | HR-TB | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR6044897 | Sensitive | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341469 | Other | lineage4 | None | ERR2693239 | HR-TB | None | SRR6045503 | HR-TB | None | SRR6045892 | Sensitive | None | SRR6046133 | HR-TB | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR6045526 | HR-TB | None | ERR4821655 | Sensitive | lineage4 | None | SRR6045555 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6045158 | Other | lineage4.9 | None | ERR278594 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6325444 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | SRR6046514 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6325448 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6511621 | HR-TB | None | ERR323036 | HR-TB | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR4831546 | HR-TB | lineage2.2 | None | SRR6856031 | HR-TB | lineage4.4.1.1.1 | None | ERR11465597 | Sensitive | lineage4.1.2.1 | None | ERR294248 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | ERR502532 | HR-TB | None | SRR7496517 | Other | None | ERR5311081 | HR-TB | None | ERR5311099 | HR-TB | None | SRR7535082 | Sensitive | lineage4 | None | ERR323038 | HR-TB | None | SRR7535086 | Other | None | ERR323041 | HR-TB | None | ERR323043 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR323045 | HR-TB | None | ERR323066 | Sensitive | lineage4 | None | ERR323055 | HR-TB | None | ERR323063 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR1063862 | HR-TB | None | ERR323085 | Sensitive | lineage4 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063857 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR1035122 | Sensitive | None | ERR1035157 | Other | lineage4.9 | None | ERR1063859 | HR-TB | None | ERR1063858 | HR-TB | None | ERR4407463 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR137286 | Sensitive | lineage4 | None | ERR387051 | HR-TB | None | ERR1063896 | Sensitive | None | ERR133825 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3283017 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3445503 | HR-TB | None | ERR4796929 | Sensitive | lineage4 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR473332 | Other | lineage4 | None | ERR6866547 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6358837 | HR-TB | None | ERR702404 | HR-TB | None | ERR736839 | Other | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR702406 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR736848 | HR-TB | None | ERR736867 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR736875 | HR-TB | lineage4 | None | ERR736874 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | SRR10808805 | Sensitive | None | ERR9119669 | HR-TB | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1169249 | Other | La3 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1169194 | Other | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1172234 | Other | None | SRR1169306 | Other | None | SRR1172728 | MDR-TB | None | SRR1172857 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173118 | Other | None | SRR1172951 | Other | None | SRR1173166 | Other | lineage4.9 | None | SRR1173400 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173484 | Other | lineage4 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173568 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173777 | Other | lineage4 | None | SRR1173629 | Other | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1184294 | HR-TB | None | SRR1175049 | RR-TB | None | SRR1175074 | MDR-TB | None | SRR1180996 | HR-TB | lineage4 | None | SRR1184372 | MDR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1196546 | HR-TB | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196494 | MDR-TB | None | SRR1640750 | HR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR12416824 | HR-TB | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR1196566 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR12142341 | HR-TB | None | ERR176751 | HR-TB | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR19304036 | HR-TB | None | ERR4815604 | HR-TB | None | ERR176779 | HR-TB | None | ERR176778 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161033 | HR-TB | None | SRR3675221 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR181744 | HR-TB | None | SRR3675246 | Sensitive | lineage4 | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675236 | HR-TB | None | ERR181824 | HR-TB | lineage4 | None | ERR176568 | Other | lineage4.3 | None |
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