lineage | Count |
---|---|
74 | |
lineage1.1 | 1 |
lineage2.1 | 2 |
lineage3.1 | 2 |
lineage2 | 2 |
lineage4.1 | 2 |
lineage2.2.1 | 9 |
lineage4 | 72 |
lineage4.3.4.2.1 | 1 |
lineage4.1.2.1 | 14 |
La1 | 1 |
lineage4.9 | 28 |
La1.8.1 | 2 |
lineage4.3.3 | 2 |
lineage4.3.2.1 | 1 |
lineage4.3.2 | 1 |
lineage1.1.3.1 | 1 |
lineage2.2.2 | 1 |
lineage4.4.1.1 | 2 |
lineage4.5 | 1 |
lineage2.2 | 1 |
lineage1.2.1.2.1 | 1 |
La1.7.1 | 1 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.1.1.3 | 1 |
lineage4.1.1.2 | 1 |
lineage4.1.1 | 1 |
lineage1.1.2 | 1 |
lineage4.9;lineage2.1 | 1 |
spoligotype | Count |
---|---|
None | 229 |
ID | Drug resistance | Lineage | Country iso2 | SRR6511621 | HR-TB | None | SRR6325442 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | ERR4831997 | MDR-TB | lineage2.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR294248 | HR-TB | None | ERR323036 | HR-TB | None | SRR6832171 | Pre-XDR-TB | lineage2 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR502510 | Sensitive | lineage4 | None | ERR502943 | HR-TB | None | ERR502889 | Other | None | ERR323038 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311090 | HR-TB | None | ERR5311081 | HR-TB | None | SRR7796666 | Pre-XDR-TB | lineage2.2.1 | None | SRR7535082 | Sensitive | lineage4 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR8217918 | HR-TB | None | ERR323041 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323055 | HR-TB | None | ERR323063 | HR-TB | None | ERR323066 | Sensitive | lineage4 | None | ERR067681 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR067699 | HR-TB | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR133825 | Sensitive | lineage4 | None | ERR133986 | HR-TB | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283032 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR3283017 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR349265 | Sensitive | lineage4 | None | ERR3283055 | HR-TB | None | ERR3439432 | Other | None | ERR3468544 | HR-TB | None | ERR349264 | Sensitive | lineage4 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369163 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797036 | HR-TB | None | ERR3797082 | Other | lineage4.9 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR349296 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363426 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR3797016 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797046 | HR-TB | None | ERR4796929 | Sensitive | lineage4 | None | ERR403298 | HR-TB | lineage4 | None | ERR4188350 | HR-TB | None | ERR4797264 | Sensitive | None | ERR4797184 | Sensitive | lineage4 | None | ERR4798406 | HR-TB | None | ERR4797474 | Other | None | ERR4799025 | Pre-XDR-TB | None | ERR4811493 | HR-TB | None | SRR1162740 | Other | lineage4.1.2.1 | None | ERR5908228 | Other | lineage4.3.3 | None | ERR6358837 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR8975532 | HR-TB | lineage4.3.2.1 | None | ERR8976043 | HR-TB | None | SRR10808399 | Sensitive | lineage4 | None | SRR10808805 | Sensitive | None | SRR10809074 | Sensitive | lineage4 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6358979 | Other | None | ERR6866410 | Sensitive | None | ERR736848 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9634265 | Sensitive | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | SRR069989 | HR-TB | lineage2 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175513 | Other | lineage4.9 | None | SRR1175508 | Other | lineage4.9 | None | SRR13837805 | Sensitive | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR13837796 | Sensitive | lineage4.9 | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR13861304 | Other | lineage4.9 | None | SRR13861153 | Other | lineage4.9 | None | SRR13861261 | Sensitive | lineage4.9 | None | SRR13861439 | RR-TB | lineage4.9 | None | SRR13861376 | Other | lineage4.9 | None | SRR13861396 | HR-TB | lineage4.9 | None | SRR13861699 | Sensitive | lineage4.9 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR13861556 | Other | lineage4.9 | None | SRR13861686 | RR-TB | lineage4.9 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR14801749 | Sensitive | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR1640750 | HR-TB | None | SRR1791747 | Other | La1.8.1 | None | ERR10610313 | HR-TB | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR9806750 | HR-TB | None | SRR3675477 | Other | lineage4.9 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675502 | Other | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR1035239 | HR-TB | None | SRR6325445 | HR-TB | None | ERR158583 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675482 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675486 | HR-TB | None | SRR3675246 | Sensitive | lineage4 | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675387 | Sensitive | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675383 | HR-TB | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675550 | Other | None | SRR3675545 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR3675558 | HR-TB | None | SRR3675571 | HR-TB | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR1035162 | Other | None | SRR5341455 | Sensitive | lineage4 | None | ERR4818252 | Other | lineage4.1.1.2 | None | SRR5341387 | Other | lineage4 | None | SRR5341396 | Other | lineage4 | None | SRR5341418 | Other | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR2229143 | Other | lineage4.1.1 | None | ERR4818929 | HR-TB | None | SRR5341425 | Other | lineage4 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341467 | Other | lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR5341469 | Other | lineage4 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR2693239 | HR-TB | None | SRR6045053 | Other | None | SRR5535933 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045892 | Sensitive | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045002 | MDR-TB | lineage4.9 | None | ERR278594 | HR-TB | None | ERR4821655 | Sensitive | lineage4 | None | SRR6045555 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6046210 | Other | lineage4 | None | SRR6325444 | HR-TB | None | SRR6046397 | Other | None | SRR6325448 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046492 | Other | None | SRR6325447 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6046897 | Sensitive | lineage4 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None |
---|