Rv0006 - c.1326C>G
Drug resistance types
48 Sensitive
4 RR-TB
101 HR-TB
12 MDR-TB
7 Pre-XDR-TB
0 XDR-TB
68 Other
lineage Counts
| lineage | Count |
|---|---|
| 93 | |
| lineage4.3.2 | 2 |
| lineage2.2.1 | 14 |
| lineage4 | 47 |
| lineage4.1.2.1 | 8 |
| lineage1.1 | 1 |
| lineage3.1 | 2 |
| lineage2.2 | 8 |
| lineage5.2 | 2 |
| lineage4.6.2.2 | 4 |
| lineage4.1 | 3 |
| lineage4.1.2 | 2 |
| lineage4.8 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.9 | 20 |
| La1.2 | 2 |
| La1 | 1 |
| lineage4.3.3 | 2 |
| lineage4.1.2.1.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.8;lineage4.1 | 2 |
| lineage3 | 3 |
| lineage6.1.3 | 1 |
| lineage2 | 1 |
| lineage2.2.2 | 1 |
| La3 | 1 |
| lineage1.2.1.2 | 1 |
| lineage1.2.1.2.1 | 1 |
| La1.8.1 | 2 |
| lineage3.1.2.1 | 1 |
| lineage4.9;La1 | 1 |
| lineage4.2;La1.7 | 1 |
| lineage4.3.4 | 1 |
| lineage3;lineage2.1 | 1 |
| lineage4.3 | 1 |
| lineage2.1 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.1.1 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage1.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 240 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6046397 | Other | None | ERR1213930 | Other | lineage4.3.2 | pe | SRR6325447 | HR-TB | None | SRR6046492 | Other | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR3077978 | Other | lineage1.1 | None | SRR6511621 | HR-TB | None | SRR6325442 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR294248 | HR-TB | None | ERR323036 | HR-TB | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR323038 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | ERR5311099 | HR-TB | None | ERR5311090 | HR-TB | None | ERR5311081 | HR-TB | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR323041 | HR-TB | None | SRR9971112 | Other | lineage2.2.1 | None | SRR7796666 | Pre-XDR-TB | lineage2.2.1 | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323055 | HR-TB | None | ERR323063 | HR-TB | None | ERR323066 | Sensitive | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR323107 | Other | lineage4 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR067699 | HR-TB | lineage4 | None | ERR1035122 | Sensitive | None | ERR1063857 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR137286 | Sensitive | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR3283025 | HR-TB | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283017 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283058 | Other | lineage4.9 | None | ERR3283055 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR4821179 | Other | lineage4.1.2.1 | gb | ERR3445504 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797087 | Sensitive | lineage4 | None | ERR3797043 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797086 | Other | lineage4.9 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR4188350 | HR-TB | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR387051 | HR-TB | None | ERR4024991 | Other | None | ERR4769497 | HR-TB | La1.2 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR473332 | Other | lineage4 | None | ERR4769452 | HR-TB | None | ERR4796929 | Sensitive | lineage4 | None | ERR4769521 | HR-TB | None | ERR4796254 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797474 | Other | None | ERR4797264 | Sensitive | None | ERR4798099 | Other | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4799025 | Pre-XDR-TB | None | ERR4799378 | Sensitive | lineage4 | None | ERR4798262 | HR-TB | La1 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR4811493 | HR-TB | None | ERR5908228 | Other | lineage4.3.3 | None | ERR6866639 | Other | None | ERR6358837 | HR-TB | None | ERR6358979 | Other | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866022 | Other | None | ERR6866807 | HR-TB | lineage4 | None | ERR736835 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR751326 | Sensitive | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR8976043 | HR-TB | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9119669 | HR-TB | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9634265 | Sensitive | None | ERR9786843 | Other | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR990545 | Other | lineage3 | None | ERR9787256 | Other | lineage6.1.3 | None | SRR069989 | HR-TB | lineage2 | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | SRR10808805 | Sensitive | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1167384 | Other | lineage4 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1173568 | Other | lineage4.9 | None | SRR1169306 | Other | None | SRR1169249 | Other | La3 | None | SRR1183049 | Other | lineage2.2 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR13861261 | Sensitive | lineage4.9 | None | SRR13861322 | Other | lineage4.9 | None | SRR13861400 | Other | lineage4.9 | None | SRR14782405 | HR-TB | None | SRR13861439 | RR-TB | lineage4.9 | None | SRR13861646 | Other | lineage4.9 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR14801749 | Sensitive | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR1791696 | Other | La1.8.1 | None | SRR1791747 | Other | La1.8.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | ERR11069122 | Sensitive | lineage3.1.2.1 | None | SRR23961542 | Other | lineage4.9;La1 | None | SRR23961549 | Other | La1.2 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR3675482 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR6325445 | HR-TB | None | ERR1035239 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675486 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675246 | Sensitive | lineage4 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR181744 | HR-TB | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675270 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | SRR3675456 | HR-TB | None | ERR176643 | HR-TB | None | SRR3675284 | HR-TB | lineage4.9 | None | SRR3675383 | HR-TB | None | SRR3675545 | HR-TB | None | ERR176751 | HR-TB | None | SRR3675555 | HR-TB | None | ERR212001 | HR-TB | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR212033 | HR-TB | None | SRR3675574 | HR-TB | None | SRR3675558 | HR-TB | None | ERR212123 | Other | None | ERR4816466 | HR-TB | None | SRR3675571 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR2229143 | Other | lineage4.1.1 | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR2446566 | Other | lineage4.1 | None | SRR5341373 | HR-TB | lineage4 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4818252 | Other | lineage4.1.1.2 | None | SRR5341453 | Sensitive | None | SRR5341408 | Sensitive | lineage3 | None | SRR5341387 | Other | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341425 | Other | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | ERR2514692 | Other | None | SRR5341300 | Other | lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341330 | HR-TB | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341313 | HR-TB | None | SRR5341315 | Sensitive | None | SRR5341461 | Sensitive | lineage4 | None | ERR6359082 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341467 | Other | lineage4 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR4821053 | Other | lineage3 | None | ERR2693227 | Other | lineage4.9 | None | SRR5341469 | Other | lineage4 | None | ERR2693239 | HR-TB | None | SRR6045526 | HR-TB | None | ERR278594 | HR-TB | None | SRR6045892 | Sensitive | None | SRR6044838 | Other | lineage4.9 | None | SRR6045053 | Other | None | SRR6045233 | HR-TB | None | SRR6045217 | Other | lineage4 | None | SRR6046046 | Other | None | SRR6045399 | Other | None | SRR6045327 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046225 | HR-TB | None | SRR6325444 | HR-TB | None |
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