lineage | Count |
---|---|
lineage4.9 | 39 |
165 | |
lineage4 | 89 |
lineage4.1.2.1 | 13 |
lineage4.8 | 3 |
lineage2.2 | 7 |
lineage2.2.1 | 18 |
lineage4.2.1 | 1 |
lineage5.2 | 2 |
La2 | 1 |
lineage4.7 | 1 |
lineage4.1.2 | 1 |
lineage4.4.1.2 | 1 |
La1 | 1 |
lineage4.1.3 | 2 |
lineage2 | 2 |
lineage3.1.2 | 1 |
lineage3 | 1 |
lineage4.5 | 3 |
lineage4.6.1.1 | 1 |
lineage4.3.4 | 1 |
lineage1.2.2.1 | 1 |
lineage1.1.2 | 1 |
lineage4.1.1 | 1 |
lineage4.6.2.2 | 1 |
lineage6.3.1 | 1 |
lineage6 | 1 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
La3 | 1 |
lineage4.3.3 | 2 |
lineage2.2.1.1 | 4 |
lineage3.1 | 1 |
lineage4.3.4.1 | 1 |
lineage3;lineage2.2.1 | 1 |
lineage2.2.1;La3 | 1 |
lineage4.1 | 1 |
lineage4.9;La3 | 1 |
lineage4.9;La1 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
La1.2 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.3.4.2.1 | 1 |
lineage4.3 | 1 |
lineage2.1 | 1 |
lineage4.4.1.1 | 1 |
La1.8.1 | 1 |
lineage4.8;La3 | 1 |
spoligotype | Count |
---|---|
None | 383 |
ID | Drug resistance | Lineage | Country iso2 | ERR4818110 | Sensitive | lineage4.9 | None | ERR1035162 | Other | None | ERR234659 | HR-TB | None | SRR5007188 | Other | lineage4 | None | ERR4818929 | HR-TB | None | ERR4818615 | Other | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341293 | HR-TB | lineage4 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5341418 | Other | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | ERR2515901 | Sensitive | lineage2.2 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341313 | HR-TB | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341299 | Sensitive | lineage4 | None | ERR2514692 | Other | None | ERR2514821 | Other | lineage2.2.1 | None | SRR5341302 | HR-TB | None | ERR1023509 | Other | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341456 | Other | None | ERR2693238 | HR-TB | lineage4.9 | None | ERR2652925 | HR-TB | lineage4.9 | None | SRR6045519 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6044780 | Other | lineage4.9 | None | SRR5341315 | Sensitive | None | SRR5341333 | HR-TB | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341470 | HR-TB | None | SRR6045503 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | SRR6044790 | HR-TB | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6045233 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046066 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6046299 | HR-TB | None | SRR6046245 | Other | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046225 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046397 | Other | None | SRR6046460 | HR-TB | None | ERR4830353 | Other | None | SRR6046482 | HR-TB | None | SRR6046897 | Sensitive | lineage4 | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046824 | HR-TB | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046802 | Other | lineage4 | None | SRR6832249 | Other | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6511621 | HR-TB | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4831638 | Sensitive | None | ERR294266 | HR-TB | None | SRR6789626 | Other | None | SRR6832787 | RR-TB | lineage2.2.1 | None | SRR6855680 | Sensitive | lineage2.2 | None | ERR502889 | Other | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | SRR7496509 | Other | None | SRR8217918 | HR-TB | None | SRR7496471 | Sensitive | None | ERR323107 | Other | lineage4 | None | ERR323039 | HR-TB | None | SRR7496523 | Other | lineage4.7 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR323066 | Sensitive | lineage4 | None | ERR323043 | HR-TB | None | ERR323045 | HR-TB | None | ERR323053 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323108 | HR-TB | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR067681 | HR-TB | None | ERR1034652 | Other | None | ERR1023525 | HR-TB | lineage4 | None | ERR133986 | HR-TB | None | ERR133825 | Sensitive | lineage4 | None | ERR1035122 | Sensitive | None | ERR1035157 | Other | lineage4.9 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063857 | HR-TB | None | ERR1063858 | HR-TB | None | ERR1063859 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR137286 | Sensitive | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3283025 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283028 | Other | None | ERR3283027 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3439432 | Other | None | ERR3283055 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3445501 | HR-TB | None | ERR3445504 | HR-TB | None | ERR349264 | Sensitive | lineage4 | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445503 | HR-TB | None | ERR349265 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349299 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363453 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369158 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR3797015 | HR-TB | None | ERR373945 | HR-TB | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797043 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797058 | Other | lineage4.9 | None | ERR3797036 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797063 | HR-TB | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797069 | Other | None | ERR3797086 | Other | lineage4.9 | None | ERR3797087 | Sensitive | lineage4 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR400336 | Sensitive | lineage4 | None | ERR400320 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR400345 | Other | lineage4 | None | ERR4024991 | Other | None | ERR403298 | HR-TB | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR405209 | Sensitive | lineage4 | None | ERR473332 | Other | lineage4 | None | ERR4596910 | Sensitive | lineage4 | None | ERR4188247 | HR-TB | None | ERR4407463 | HR-TB | None | ERR4769521 | HR-TB | None | ERR4796577 | MDR-TB | None | ERR4796254 | Sensitive | lineage4 | None | ERR4798431 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797313 | HR-TB | None | ERR4798099 | Other | None | ERR4798406 | HR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799025 | Pre-XDR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4800341 | Other | lineage3 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4811022 | HR-TB | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4810741 | HR-TB | None | ERR6358991 | HR-TB | None | ERR4812155 | Sensitive | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4811030 | Sensitive | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR5336148 | Other | None | ERR6865502 | Sensitive | lineage4 | None | ERR6359045 | HR-TB | None | ERR6866022 | Other | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR736856 | HR-TB | lineage4 | None | ERR702406 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736848 | HR-TB | None | ERR6866807 | HR-TB | lineage4 | None | ERR702404 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR736865 | HR-TB | None | ERR7821210 | Sensitive | lineage1.2.2.1 | None | ERR736875 | HR-TB | lineage4 | None | ERR736867 | HR-TB | None | ERR736874 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR9117709 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9119669 | HR-TB | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786604 | Other | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787197 | Other | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR987722 | HR-TB | None | SRR1169194 | Other | None | SRR1158918 | Sensitive | lineage4 | None | SRR1167384 | Other | lineage4 | None | SRR1169249 | Other | La3 | None | SRR1172857 | MDR-TB | None | SRR1169306 | Other | None | SRR1172310 | HR-TB | None | SRR1172728 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1172234 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1172951 | Other | None | SRR1173153 | HR-TB | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173400 | Other | None | SRR1173568 | Other | lineage4.9 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173629 | Other | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1173778 | Other | None | SRR1174897 | HR-TB | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1181251 | Other | lineage2.2.1 | None | SRR1184381 | MDR-TB | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1184294 | HR-TB | None | SRR1184372 | MDR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1184388 | Other | None | SRR1184380 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR1196546 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196768 | MDR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR12142341 | HR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR12416824 | HR-TB | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR14782405 | HR-TB | None | SRR16157123 | Other | lineage4.9 | None | SRR15368973 | Other | None | SRR20632814 | Sensitive | lineage4 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR25827682 | Other | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR26937071 | MDR-TB | lineage2.2.1;La3 | None | SRR26159043 | Other | lineage4.9 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR8692790 | RR-TB | lineage4 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR23961542 | Other | lineage4.9;La1 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR23961549 | Other | La1.2 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR3675455 | Sensitive | lineage4 | None | ERR176779 | HR-TB | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | ERR176778 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675477 | Other | lineage4.9 | None | SRR3675465 | HR-TB | None | SAMN02585910 | Other | lineage2.2.1 | None | ERR158583 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675229 | Other | lineage4 | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3675210 | Sensitive | lineage4.9 | None | SRR3675222 | Other | None | SRR3675488 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675236 | HR-TB | None | SRR3675265 | Other | lineage4 | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675247 | Other | lineage4.9 | None | ERR176568 | Other | lineage4.3 | None | SRR3675501 | HR-TB | None | SRR3675279 | Other | None | SRR3675312 | HR-TB | lineage4 | None | SRR3675292 | Sensitive | lineage4 | None | ERR176643 | HR-TB | None | SRR3675311 | Other | None | ERR176651 | HR-TB | None | ERR176751 | HR-TB | None | SRR3675318 | Other | lineage4.9 | None | SRR3675387 | Sensitive | None | ERR176740 | HR-TB | None | ERR181887 | HR-TB | None | SRR3675502 | Other | None | ERR2229542 | Other | lineage4.8 | None | SRR3675510 | Other | None | SRR3675522 | Other | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675548 | Sensitive | lineage4.9 | None | ERR212001 | HR-TB | None | ERR2027263 | Other | lineage4 | None | SRR3675550 | Other | None | ERR212033 | HR-TB | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR4817060 | RR-TB | None | SRR3675574 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | ERR212121 | HR-TB | None | SRR3675572 | Other | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR4816548 | MDR-TB | lineage4.5 | None | SRR3675571 | HR-TB | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4816656 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR4818021 | Other | La1.8.1 | None | ERR4817893 | Other | lineage4.8;La3 | None | SRR7496472 | Other | None |
---|