lineage | Count |
---|---|
84 | |
lineage4.1.2.1 | 3 |
lineage4 | 20 |
lineage4.7 | 1 |
lineage2.2 | 4 |
La1 | 2 |
lineage4.9 | 13 |
La1.8.1 | 2 |
lineage4.1.3 | 2 |
lineage3 | 2 |
lineage3.1.2 | 1 |
lineage4.6.1.1 | 1 |
lineage1.1.3.1 | 1 |
lineage2.2.1 | 11 |
lineage1.1.2 | 1 |
lineage4.3.2 | 1 |
lineage5.2 | 2 |
lineage6.3.1 | 1 |
La3 | 1 |
lineage2.2.1.1 | 1 |
lineage4.5 | 1 |
lineage2 | 1 |
lineage2.1 | 2 |
lineage4.3 | 1 |
lineage4.9;lineage2.1 | 1 |
lineage4.2.1.1 | 1 |
La2 | 1 |
spoligotype | Count |
---|---|
None | 162 |
ID | Drug resistance | Lineage | Country iso2 | SRR7496509 | Other | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7535082 | Sensitive | lineage4 | None | SRR7496517 | Other | None | SRR7496523 | Other | lineage4.7 | None | ERR323053 | HR-TB | None | ERR323043 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1023525 | HR-TB | lineage4 | None | ERR067681 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR1063857 | HR-TB | None | ERR133986 | HR-TB | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283036 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283027 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283043 | Other | lineage4.9 | None | ERR3445501 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3439432 | Other | None | ERR3283051 | Other | lineage4.9 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3445502 | HR-TB | lineage4 | None | ERR3797015 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797063 | HR-TB | None | ERR3797069 | Other | None | ERR3797058 | Other | lineage4.9 | None | ERR5336148 | Other | None | ERR403298 | HR-TB | lineage4 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4024991 | Other | None | ERR4797474 | Other | None | ERR4407463 | HR-TB | None | ERR4769521 | HR-TB | None | ERR4797184 | Sensitive | lineage4 | None | ERR4798099 | Other | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798262 | HR-TB | La1 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4798406 | HR-TB | None | ERR4799378 | Sensitive | lineage4 | None | ERR4811142 | MDR-TB | None | ERR4810741 | HR-TB | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR736867 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6866639 | Other | None | ERR6866807 | HR-TB | lineage4 | None | ERR6359045 | HR-TB | None | ERR6866022 | Other | None | ERR6866547 | Sensitive | lineage4 | None | ERR736874 | HR-TB | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR9117709 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9119669 | HR-TB | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR1167384 | Other | lineage4 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786843 | Other | None | ERR9787139 | Other | lineage6.3.1 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1169249 | Other | La3 | None | SRR1169194 | Other | None | SRR1169306 | Other | None | SRR1172817 | HR-TB | None | SRR1172234 | Other | None | SRR1172728 | MDR-TB | None | SRR1173568 | Other | lineage4.9 | None | SRR1173118 | Other | None | SRR1173778 | Other | None | SRR1173629 | Other | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1173788 | Other | None | SRR1180996 | HR-TB | lineage4 | None | SRR12416824 | HR-TB | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1184372 | MDR-TB | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR12142341 | HR-TB | None | SRR19304036 | HR-TB | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR13837800 | Sensitive | lineage4.9 | None | SRR15368973 | Other | None | SRR17658565 | Other | lineage3 | None | SRR19303884 | HR-TB | None | SRR8692899 | Other | lineage4.9 | None | SRR20969677 | HR-TB | lineage2 | None | SRR2101360 | MDR-TB | lineage4.1.2.1 | None | ERR4815604 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675465 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675502 | Other | None | ERR158583 | HR-TB | None | ERR176643 | HR-TB | None | SRR3675236 | HR-TB | None | ERR702405 | Sensitive | lineage2.1 | None | ERR176568 | Other | lineage4.3 | None | ERR212001 | HR-TB | None | ERR2027263 | Other | lineage4 | None | SRR3675311 | Other | None | SRR3675550 | Other | None | SRR3742665 | HR-TB | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR212033 | HR-TB | None | SRR3675572 | Other | None | SRR3675574 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR1035162 | Other | None | SRR7496472 | Other | None | ERR4818021 | Other | La1.8.1 | None | ERR4818536 | Other | lineage4.9 | None | ERR4819462 | Other | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341302 | HR-TB | None | SRR5341418 | Other | None | SRR5341432 | HR-TB | lineage4 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR5341315 | Sensitive | None | SRR6045526 | HR-TB | None | SRR6045892 | Sensitive | None | SRR6045555 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6044790 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045327 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046460 | HR-TB | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6046540 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046824 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR6832249 | Other | lineage2.2.1 | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | ERR502889 | Other | None | SRR6789626 | Other | None | ERR502510 | Sensitive | lineage4 | None |
---|