EBG00000313339 - n.1060A>T
Drug resistance types
10 Sensitive
16 RR-TB
22 HR-TB
29 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
33 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage2.2.1 | 13 |
| lineage4.7 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| lineage4.9 | 12 |
| lineage2.2.1.1 | 4 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage4.3.3 | 3 |
| lineage4.2;lineage4.9 | 1 |
| lineage4.8 | 5 |
| lineage3 | 4 |
| M.canetti;lineage4.2 | 1 |
| lineage4.1 | 1 |
| lineage4.1.2.1 | 6 |
| 1 | |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.9.1 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| lineage2.2.2 | 2 |
| lineage2.1;lineage4.9 | 1 |
| lineage6.1.1 | 2 |
| lineage1.1.2 | 1 |
| lineage3.1.1 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 2 |
| La2;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.3.2.1 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| lineage1.1.1 | 1 |
| lineage4.6.2.2 | 5 |
| lineage6.1.3 | 2 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| lineage5.2 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 1 |
| lineage4.9;lineage7 | 2 |
| lineage4.9;lineage9 | 2 |
| La1.6;La3;lineage4.9 | 2 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La1.2 | 1 |
| lineage2.2.1;lineage4.1.2.1 | 1 |
| lineage4.5 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.1.3 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| lineage3.1.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 114 |
Geographic prevalence
Country level data for this variant is available for 7 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR1181328 | Other | lineage2.2.1 | None | ERR4817189 | Other | lineage4.7 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR176751 | HR-TB | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR5341418 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | ERR4821679 | Other | lineage4.3.3 | None | ERR4828872 | RR-TB | lineage4.2;lineage4.9 | None | ERR4818691 | Other | lineage4.8 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | ERR2514351 | Sensitive | lineage3 | gb | SRR17658565 | Pre-XDR-TB | lineage3 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR4815502 | Other | lineage4.1 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR4816856 | Other | lineage4.1.2.1 | None | ERR987722 | MDR-TB | None | SRR3675555 | MDR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR13423649 | Other | lineage2.2.1 | None | ERR9786384 | Sensitive | lineage4.1.2.1 | None | SRR6832249 | Sensitive | lineage2.2.1 | None | ERR245758 | Other | lineage4.9.1 | None | ERR4798504 | RR-TB | lineage3 | None | SRR6832787 | Other | lineage2.2.1 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR1181251 | Other | lineage2.2.1 | None | ERR987729 | MDR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR3675495 | RR-TB | lineage2.1;lineage4.9 | None | ERR3799304 | RR-TB | lineage6.1.1 | None | SRR7898221 | MDR-TB | lineage1.1.2 | None | ERR4817398 | Other | lineage3.1.1 | None | SRR28119823 | Sensitive | lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR736865 | MDR-TB | lineage4.3.2;lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR323039 | MDR-TB | La2;lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR8975532 | HR-TB | lineage4.3.2.1 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | SRR14066533 | RR-TB | lineage1.1.1 | None | SRR1180147 | RR-TB | lineage2.2.1.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | ERR4819324 | Other | lineage4.8 | gb | SRR11342676 | HR-TB | lineage4.6.2.2 | None | ERR1023236 | Other | lineage6.1.3 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | ERR2513819 | Pre-XDR-TB | lineage4.3.3 | gb | SRR1183144 | RR-TB | lineage2.2.1 | None | ERR2706950 | MDR-TB | lineage5.2 | cd | ERR4820151 | Other | lineage4.8 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR3675539 | MDR-TB | lineage4.9;lineage7 | None | ERR2513082 | Other | lineage4.1.2.1 | gb | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR4818050 | Sensitive | lineage4.6.2.2 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | SRR6046397 | RR-TB | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR6045219 | HR-TB | lineage4.9 | None | SRR23961558 | RR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR502524 | MDR-TB | lineage4.9;lineage6.3 | None | SRR3675571 | MDR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR1035162 | MDR-TB | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR3801503 | Other | lineage4.6.2.2 | None | ERR4829337 | Sensitive | lineage4.8 | None | ERR3283042 | HR-TB | lineage4.9 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR6198317 | Other | La1.2 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR11488822 | Pre-XDR-TB | lineage2.2.1;lineage4.1.2.1 | None | ERR9786711 | Other | lineage4.6.2.2 | None | ERR4819593 | Sensitive | lineage4.5 | None | SRR1180172 | RR-TB | lineage2.2.1 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR133986 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR4819166 | Other | lineage3 | gb | SRR3675502 | Sensitive | lineage4.9 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR4815780 | MDR-TB | lineage4.1.3 | None | SAMN02585910 | RR-TB | lineage2.2.1 | None | ERR4820736 | Sensitive | lineage4.1.2.1 | gb | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR4819579 | HR-TB | lineage4.3.3 | None | ERR9787014 | RR-TB | lineage6.1.1 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR26159047 | RR-TB | lineage4.6.3;lineage4.9 | None | SRR1172310 | MDR-TB | lineage4.9 | None | ERR387051 | RR-TB | lineage4.9 | None | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | ERR4819191 | Other | lineage4.6.2.2 | None | ERR2693231 | HR-TB | La1.6;La3;lineage4.6.4;lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR3797014 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR3675582 | Other | lineage4.9 | None |
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