Rv0701 - c.-50C>T


Drug resistance types
13 Sensitive 16 RR-TB 51 HR-TB 37 MDR-TB 2 Pre-XDR-TB 1 XDR-TB 75 Other
lineage Counts
lineage Count
lineage4.9 73
lineage2.2.1 7
lineage4.8 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La1.7;lineage4.9 12
lineage1;lineage4.9 1
La3;lineage4.3.4 1
M.canetti;lineage1 1
lineage4.6.3;lineage4.9 1
La1;lineage4.9 1
M.canetti;lineage4.2;lineage4.9 2
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
La3;lineage4.9 6
La1.7;M.canetti;lineage4.9 5
lineage1.2.2.1;lineage4.4.1.1 1
La1.6;La3;M.canetti;lineage4.2;lineage4.9 1
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
lineage4.6.4;lineage4.9 1
lineage2.2.1.1 4
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 3
lineage4.9;lineage9 3
lineage2.1;lineage4.9 1
lineage4.2;lineage4.8.1;lineage4.9 2
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
La1.7;lineage3;lineage4.9;lineage7 1
lineage2.2.1;lineage4.9 1
lineage4.2;lineage4.9 3
lineage2.2 3
lineage1.1.3.1 1
1
La1.6;lineage4 1
lineage3.1;lineage9 1
La1.7;lineage4.9;lineage6 1
lineage4.5 1
M.canetti;lineage4.9 3
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
lineage3 2
lineage2.2.1.2 2
La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 1
La1.7;lineage4.9;lineage7 3
M.canetti;lineage4.6.4;lineage4.9 2
lineage4.3.2.1 1
lineage3.1.2.1;lineage3.1.2.2 1
La1.7.1;La1.7.X-unk4 1
lineage4.3.4.1 1
lineage4.3.2;lineage4.9 1
lineage4.9;lineage6.3 2
lineage2.2.1.2;lineage7 1
La2;lineage4.9;lineage9 1
La1.8.1 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
lineage4.2;lineage4.6.3;lineage4.9 1
La1;lineage4.1.2 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
M.canetti;lineage4.2 1
M.canetti;lineage4.9;lineage9 1
lineage4 1
lineage4.3.4 1
La1.6;La3;M.canetti;lineage4.2.2 1
La1.7.1 1
lineage2.2;lineage4.9 1
lineage4.9;lineage6.1.3 1
lineage3.1.2.2 1
La1.7.1;lineage4.9 1
La2;lineage4.9 1
La1.7 1
lineage4.2;lineage4.6.3;lineage4.9.1 2
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
lineage4.9;lineage7 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
La1.7.X-unk4;lineage4.9 1
spoligotype Counts
spoligotype Count
None 195
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR926162 Sensitive lineage4.9 None
SRR1172310 MDR-TB lineage4.9 None
ERR926154 Sensitive lineage4.9 None
ERR736848 Other lineage4.9 None
ERR926157 Other lineage4.9 None
SRR1181251 Other lineage2.2.1 None
ERR4799025 Other lineage4.8 None
SRR3675446 RR-TB lineage4.9 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR14782054 Other lineage4.9 None
SRR3675461 RR-TB lineage4.9 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
SRR3675267 Other La1.7;lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
ERR161039 HR-TB La3;lineage4.3.4 None
SRR15014655 Other M.canetti;lineage1 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
SRR10808805 Other La1;lineage4.9 None
SRR3675571 MDR-TB M.canetti;lineage4.2;lineage4.9 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
ERR1035162 MDR-TB M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR176779 HR-TB lineage4.9 None
ERR181744 HR-TB La3;lineage4.9 None
SRR3675488 Other La1.7;lineage4.9 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
SRR14801759 MDR-TB La1.7;lineage4.9 None
ERR11465714 Other lineage1.2.2.1;lineage4.4.1.1 None
ERR5311079 MDR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.9 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
ERR4188322 Other lineage4.6.4;lineage4.9 None
SRR1181091 Other lineage2.2.1.1 None
SRR6046824 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR1180147 RR-TB lineage2.2.1.1 None
SRR6046720 HR-TB lineage4.9;lineage9 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
ERR294266 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
ERR4815310 Other lineage2.2.1;lineage4.9 None
ERR1023509 MDR-TB lineage4.9 None
ERR3283057 Sensitive La3;lineage4.9 None
ERR6359082 Other lineage4.9 None
ERR926155 Other lineage4.9 None
ERR3283021 MDR-TB lineage4.9 None
SRR3675505 Other La1.7;M.canetti;lineage4.9 None
SRR11662690 HR-TB lineage4.9 None
SRR5341456 Other lineage4.9 None
SRR6046026 RR-TB lineage4.2;lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
SRR20970016 Other lineage2.2 None
ERR736856 HR-TB lineage4.9 None
ERR971389 Other lineage4.9 None
ERR181824 MDR-TB lineage4.9 None
ERR176560 HR-TB La1.7;lineage4.9 None
ERR8479578 HR-TB lineage1.1.3.1 None
ERR987722 MDR-TB None
SRR28351554 Other La1.6;lineage4 None
SRR6045795 Other lineage2.2.1 None
SRR25827418 XDR-TB lineage3.1;lineage9 None
ERR6866547 Other La1.7;lineage4.9;lineage6 None
ERR752229 Other lineage4.5 None
ERR3797029 Other lineage4.9 None
SRR3675385 Other La1.7;lineage4.9 None
SRR3675449 RR-TB M.canetti;lineage4.9 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR067681 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR6046046 Other lineage4.9 None
SRR6046878 Other lineage4.9 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR4798504 RR-TB lineage3 None
ERR926165 Other lineage4.9 None
SRR3675550 RR-TB M.canetti;lineage4.2;lineage4.9 None
ERR4799989 Pre-XDR-TB lineage2.2.1.2 None
SRR20969731 Other lineage2.2.1 None
ERR5311103 RR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 None
SRR5341313 Other La1.7;lineage4.9;lineage7 None
ERR9119669 MDR-TB lineage4.9 None
SRR3675586 RR-TB M.canetti;lineage4.6.4;lineage4.9 None
SRR12708407 HR-TB lineage4.3.2.1 None
ERR987729 MDR-TB lineage3.1.2.1;lineage3.1.2.2 None
SRR6045347 Other lineage4.9 None
SRR14801749 HR-TB lineage4.9 None
SRR6045399 Other M.canetti;lineage4.9 None
ERR176778 HR-TB lineage4.9 None
ERR926158 Sensitive lineage4.9 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
ERR3283011 Other La3;lineage4.9 None
ERR11465151 Sensitive lineage4.3.4.1 None
SRR6046196 Other La1.7;M.canetti;lineage4.9 None
ERR3283047 Sensitive La3;lineage4.9 None
ERR736865 MDR-TB lineage4.3.2;lineage4.9 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
SRR18549032 HR-TB lineage2.2.1.2;lineage7 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
ERR108471 HR-TB lineage4.9 None
SRR1183111 HR-TB lineage4.9 None
ERR3797073 Other La1.8.1 None
ERR323108 HR-TB La1.7;lineage4.9 None
SRR6044875 Other lineage4.9 None
ERR926164 Other lineage4.9 None
SRR5341418 MDR-TB La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
ERR3797047 MDR-TB lineage4.9 None
ERR5311097 Other lineage4.2;lineage4.6.3;lineage4.9 None
ERR473332 Other lineage4.9 None
SRR1172796 Sensitive lineage2.2.1.2 None
SRR9970978 Other La1;lineage4.1.2 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
ERR3797046 HR-TB lineage4.9 None
SRR1184024 RR-TB lineage2.2.1.1 None
ERR502889 MDR-TB La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
ERR4769450 Other lineage4.9 None
ERR212125 HR-TB lineage4.9 None
SRR1180172 RR-TB lineage2.2.1 None
ERR216938 HR-TB La1.7;lineage4.9 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
SRR1183106 RR-TB lineage2.2.1.1 None
ERR1034634 HR-TB lineage4.9 None
ERR926161 Sensitive lineage4.9 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
SRR6045053 Other lineage4 None
SRR3675441 RR-TB lineage4.9 None
ERR212034 HR-TB La1.7;lineage4.9 None
ERR779852 HR-TB lineage4.9 None
ERR736817 HR-TB lineage4.3.4 None
ERR3439432 RR-TB M.canetti;lineage4.6.4;lineage4.9 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
SRR6832249 Sensitive lineage2.2.1 None
ERR3283055 HR-TB lineage4.9 None
SRR1792478 HR-TB La1.7.1 None
SRR20969708 HR-TB lineage2.2 None
SRR3675390 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR5341400 Sensitive lineage4.9 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR1180226 HR-TB lineage4.9 None
SRR6045548 Other lineage4.9 None
ERR4815550 Other lineage2.2;lineage4.9 None
ERR181887 Other lineage4.9 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
SRR6046593 Other lineage4.9 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
ERR4798648 MDR-TB lineage3.1.2.2 None
ERR926160 Other lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
ERR1063846 HR-TB lineage4.9 None
ERR3797085 Other lineage4.9 None
ERR502524 MDR-TB lineage4.9;lineage6.3 None
ERR1063862 HR-TB lineage4.9 None
ERR736875 HR-TB lineage4.9 None
SRR6046210 Other lineage4.9 None
ERR4799513 HR-TB lineage2.2 None
ERR926163 Other lineage4.9 None
ERR926159 Sensitive lineage4.9 None
ERR323107 HR-TB lineage4.9 None
ERR1063858 HR-TB lineage4.9 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
SRR5341432 Other La1.7;lineage4.9;lineage7 None
ERR323039 MDR-TB La2;lineage4.9 None
SRR10809074 HR-TB lineage4.9 None
SRR8217918 HR-TB lineage4.9 None
ERR3797064 Other La3;lineage4.9 None
ERR4830353 HR-TB La1.7 None
ERR3290633 Other lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
SRR6044876 Sensitive lineage4.9 None
SRR14782405 HR-TB lineage4.9 None
SRR16156775 Other lineage4.9 None
ERR4831117 HR-TB lineage4.9;lineage7 None
ERR4828872 RR-TB lineage4.2;lineage4.9 None
ERR4769452 Other lineage4.9 None
ERR3283018 HR-TB lineage4.9 None
SRR1183144 RR-TB lineage2.2.1 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR4796929 Sensitive lineage4.9 None
ERR161037 HR-TB lineage4.9 None
ERR133986 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
ERR400529 Other lineage3 None
SRR5341373 Other lineage4.9 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
ERR176651 Other lineage4.9 None
SRR5341330 Other lineage4.9 None
SRR6046295 MDR-TB lineage4.2;lineage4.9 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
SRR5535933 Other lineage4.9 None
ERR4188247 HR-TB lineage4.9 None
ERR3797048 Other La3;lineage4.9 None
SRR3675501 Other La1.7;lineage4.9 None
SRR3675492 Other La1.7;lineage4.9 None
ERR926156 Other lineage4.9 None