lineage | Count |
---|---|
lineage4.1 | 1 |
lineage4 | 80 |
lineage4.1.1.2 | 1 |
lineage4.3.4.2.1 | 3 |
76 | |
lineage4.6.2.2 | 1 |
lineage4.9 | 12 |
lineage2.2.1 | 7 |
lineage4.9;lineage2.1 | 1 |
lineage4.2.1 | 1 |
lineage4.1.2 | 2 |
lineage4.8 | 1 |
lineage4.3.2.1 | 1 |
lineage2.2 | 3 |
lineage4.4.1.1;lineage1.2.2.1 | 1 |
La1.8.1 | 1 |
lineage4;lineage3.1 | 1 |
La1 | 1 |
lineage4.3.4 | 2 |
lineage1.1.3.1 | 1 |
lineage2.2.1.1 | 3 |
lineage7;lineage2.2.1.2 | 1 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage2.1 | 1 |
lineage1.2.1.1 | 1 |
spoligotype | Count |
---|---|
None | 204 |
ID | Drug resistance | Lineage | Country iso2 | ERR2446566 | Other | lineage4.1 | None | SRR5341387 | Other | lineage4 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4819051 | Other | lineage4 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | ERR1035162 | Other | None | SRR5341453 | Sensitive | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341425 | Other | lineage4 | None | SRR5341418 | Other | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341330 | HR-TB | None | ERR6359082 | Other | lineage4.9 | None | SRR5341456 | Other | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045706 | Sensitive | lineage4 | None | SRR5341469 | Other | lineage4 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR6045519 | HR-TB | None | SRR5341467 | Other | lineage4 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045503 | HR-TB | None | ERR4821655 | Sensitive | lineage4 | None | SRR6045217 | Other | lineage4 | None | SRR6045892 | Sensitive | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | SRR6046482 | HR-TB | None | SRR6046299 | HR-TB | None | SRR6046397 | Other | None | ERR4830353 | Other | None | SRR6045371 | Sensitive | lineage4.2.1 | None | ERR4831117 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6511621 | HR-TB | None | SRR6046802 | Other | lineage4 | None | SRR6046897 | Sensitive | lineage4 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR6981978 | Sensitive | lineage4.3.4.2.1 | None | SRR6832249 | Other | lineage2.2.1 | None | ERR502510 | Sensitive | lineage4 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR502889 | Other | None | SRR8217918 | HR-TB | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR1035122 | Sensitive | None | ERR323045 | HR-TB | None | ERR1023525 | HR-TB | lineage4 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR323107 | Other | lineage4 | None | ERR323066 | Sensitive | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR067681 | HR-TB | None | ERR067699 | HR-TB | lineage4 | None | ERR1034634 | HR-TB | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063862 | HR-TB | None | ERR1063857 | HR-TB | None | ERR1063858 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063859 | HR-TB | None | ERR133825 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR108471 | HR-TB | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR133986 | HR-TB | None | ERR137286 | Sensitive | lineage4 | None | ERR3439432 | Other | None | ERR3283025 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283055 | HR-TB | None | ERR11465714 | Other | lineage4.4.1.1;lineage1.2.2.1 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283040 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3445504 | HR-TB | None | ERR349300 | Sensitive | lineage4.9 | None | ERR3445502 | HR-TB | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR3445503 | HR-TB | None | ERR349264 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR373945 | HR-TB | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR3797015 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797086 | Other | lineage4.9 | None | ERR403298 | HR-TB | lineage4 | None | ERR4024991 | Other | None | ERR4769450 | HR-TB | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4769452 | HR-TB | None | ERR4178226 | Sensitive | lineage4 | None | ERR4188247 | HR-TB | None | ERR473332 | Other | lineage4 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4769521 | HR-TB | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797474 | Other | None | ERR4797264 | Sensitive | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4798099 | Other | None | ERR4798262 | HR-TB | La1 | None | ERR4798406 | HR-TB | None | ERR4798431 | HR-TB | None | ERR4799025 | Pre-XDR-TB | None | ERR6358991 | HR-TB | None | ERR6358979 | Other | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4811493 | HR-TB | None | ERR6866022 | Other | None | ERR6865502 | Sensitive | lineage4 | None | ERR6866639 | Other | None | ERR6866410 | Sensitive | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866807 | HR-TB | lineage4 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736839 | Other | None | ERR736835 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR736848 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR9119669 | HR-TB | None | ERR736872 | Sensitive | lineage4 | None | ERR736875 | HR-TB | lineage4 | None | ERR751326 | Sensitive | lineage4 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR1158918 | Sensitive | lineage4 | None | SRR10809074 | Sensitive | lineage4 | None | SRR10808805 | Sensitive | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1173568 | Other | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR14801749 | Sensitive | None | SRR1180996 | HR-TB | lineage4 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR14782405 | HR-TB | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | ERR176751 | HR-TB | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR2101773 | Sensitive | lineage4.3.4.2.1 | None | ERR176779 | HR-TB | None | ERR176778 | HR-TB | None | ERR158583 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675222 | Other | None | SRR3675488 | HR-TB | None | ERR181744 | HR-TB | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3675246 | Sensitive | lineage4 | None | ERR702405 | Sensitive | lineage2.1 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR176651 | HR-TB | None | SRR3675265 | Other | lineage4 | None | ERR181824 | HR-TB | lineage4 | None | SRR3675292 | Sensitive | lineage4 | None | ERR181887 | HR-TB | None | SRR3675501 | HR-TB | None | SRR3675550 | Other | None | SRR3675502 | Other | None | ERR212034 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | ERR212123 | Other | None | ERR212138 | HR-TB | lineage4 | None | ERR212121 | HR-TB | None | SRR5341384 | Sensitive | lineage4.9 | None | SRR3675571 | HR-TB | None |
---|