Rv0668 - c.3549C>T


Drug resistance types
75 Sensitive 2 RR-TB 85 HR-TB 7 MDR-TB 6 Pre-XDR-TB 0 XDR-TB 85 Other
lineage Counts
lineage Count
lineage2.2.1 15
lineage9;lineage3.1 1
lineage4.2;La1.7 1
lineage4.9 50
lineage4.9;La1 1
La1.2 2
lineage4.9;lineage4.6.3 1
lineage4 25
lineage1.1.1.1 1
101
lineage4.1.1.3 2
lineage4.8 2
lineage3 4
lineage1.1.2 2
lineage4.7 1
lineage4.1.1.2 1
lineage4.2.1 2
lineage5.1.4 1
lineage3.1.2 2
lineage4.3.3 1
lineage4.1.2.1 5
lineage2.2 5
lineage4.3.4.1 3
lineage3.1 2
La2 1
lineage4.1.2 2
lineage4.4.1.1;lineage1.2.2.1 1
lineage4.3.4.1;La1.7 1
La1.8.1 3
lineage6.1.1 2
lineage4;lineage3.1 1
lineage4.5 1
lineage4.3.4 1
lineage4.3.2 1
lineage4.3.2.1 1
lineage1.1.3.1 1
lineage6.1.3 1
lineage2.2.2 1
lineage3.1.2.2;lineage3.1.2.1 1
lineage4.4.1.1 1
lineage2.2.1.1 4
lineage4.9;lineage2.2 1
lineage4.4.1.1.1 1
lineage2 1
lineage1.2.1.2 1
lineage1.2.1.2.1 1
spoligotype Counts
spoligotype Count
None 260
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR20970043 MDR-TB lineage2.2.1 None
SRR25827418 Pre-XDR-TB lineage9;lineage3.1 None
SRR23961559 Other lineage4.2;La1.7 None
SRR22424787 Sensitive lineage4.9 None
SRR23961542 Other lineage4.9;La1 None
SRR3675473 Sensitive lineage4.9 None
SRR23961549 Other La1.2 None
SRR26159047 Other lineage4.9;lineage4.6.3 None
SRR3675455 Sensitive lineage4 None
SRR26399255 Sensitive lineage2.2.1 None
SRR26399491 Sensitive lineage1.1.1.1 None
SRR3675472 Sensitive lineage4.9 None
ERR176778 HR-TB None
ERR550636 MDR-TB lineage4.1.1.3 None
ERR176779 HR-TB None
SRR3675477 Other lineage4.9 None
SRR3675209 Sensitive lineage4.9 None
SRR3675488 HR-TB None
ERR158583 HR-TB None
SRR3675229 Other lineage4 None
SRR3675222 Other None
SRR3675279 Other None
SRR3675247 Other lineage4.9 None
SRR3675501 HR-TB None
SRR3675234 Other None
SRR3675246 Sensitive lineage4 None
SRR3675387 Sensitive None
SRR3675292 Sensitive lineage4 None
SRR3675318 Other lineage4.9 None
SRR3675312 HR-TB lineage4 None
ERR181887 HR-TB None
ERR176740 HR-TB None
SRR3675502 Other None
ERR176751 HR-TB None
ERR4817667 HR-TB lineage4.8 None
SRR3675541 Sensitive lineage4.9 None
SRR3675550 Other None
ERR212123 Other None
ERR212121 HR-TB None
SRR3675571 HR-TB None
ERR4816466 HR-TB None
ERR4816656 HR-TB None
SRR3675510 Other None
SRR3675522 Other None
SRR3675547 Other lineage4.9 None
SRR3675577 Sensitive lineage4.9 None
SRR3675574 HR-TB None
ERR4816470 Other lineage3 None
ERR1035162 Other None
SRR8380944 Sensitive lineage1.1.2 None
SRR6045503 HR-TB None
ERR2514692 Other None
SRR5341470 HR-TB None
ERR2693230 Other None
ERR2513217 Sensitive lineage4.7 None
ERR4818252 Other lineage4.1.1.2 None
ERR4818929 HR-TB None
ERR2512770 Other lineage4.2.1 None
ERR2513283 Other lineage5.1.4 None
SRR5341418 Other None
SRR5341296 Sensitive lineage4.9 None
ERR1023509 Other None
ERR2693231 Other None
ERR2693254 Other None
ERR2693257 Other None
SRR6046141 Other lineage4.9 None
SRR6045519 HR-TB None
SRR6045526 HR-TB None
SRR6045706 Sensitive lineage4 None
SRR6045010 Other lineage4 None
SRR6045892 Sensitive None
SRR6044838 Other lineage4.9 None
ERR2693232 Other lineage4.9 None
SRR6045832 HR-TB lineage4.9 None
SRR6044819 Sensitive lineage4.9 None
SRR6046397 Other None
SRR6045327 HR-TB None
SRR6045371 Sensitive lineage4.2.1 None
SRR6045399 Other None
SRR6046225 HR-TB None
SRR6046245 Other lineage4.9 None
ERR4797694 Sensitive lineage3.1.2 in
SRR6046482 HR-TB None
ERR4830353 Other None
SRR6046644 HR-TB None
SRR6046824 HR-TB None
SRR6831950 Other lineage4.3.3 None
SRR6397654 HR-TB lineage4.1.2.1 None
SRR6511621 HR-TB None
ERR4831545 Pre-XDR-TB lineage2.2 None
ERR4831546 HR-TB lineage2.2 None
ERR4831638 Sensitive None
SRR6832249 Other lineage2.2.1 None
ERR11465353 Sensitive lineage4.3.4.1 None
SRR6832787 RR-TB lineage2.2.1 None
ERR11465597 Sensitive lineage4.1.2.1 None
ERR294266 HR-TB None
ERR502889 Other None
ERR323034 HR-TB lineage3.1 None
ERR502524 HR-TB La2 None
ERR323036 HR-TB None
SRR8217918 HR-TB None
SRR9970980 Other lineage4.1.2 None
ERR323038 HR-TB None
SRR7496471 Sensitive None
SRR9970978 Sensitive lineage4.1.2 None
ERR323041 HR-TB None
SRR9971114 Other lineage2.2.1 None
ERR323039 HR-TB None
ERR323055 HR-TB None
ERR323045 HR-TB None
ERR323054 HR-TB lineage3.1 None
ERR323053 HR-TB None
ERR323107 Other lineage4 None
ERR323063 HR-TB None
ERR1063859 HR-TB None
ERR067681 HR-TB None
ERR1034652 Other None
ERR11465352 Sensitive lineage4.3.4.1 None
ERR1063839 HR-TB lineage2.2 None
ERR1063857 HR-TB None
ERR11465714 Other lineage4.4.1.1;lineage1.2.2.1 None
ERR133986 HR-TB None
ERR11465802 Other lineage4.3.4.1;La1.7 None
ERR3283017 HR-TB None
ERR3273109 MDR-TB lineage4 None
ERR3283040 HR-TB None
ERR3283024 Other None
ERR3283030 HR-TB lineage4.9 None
ERR3283032 HR-TB None
ERR3445503 HR-TB None
ERR3283048 HR-TB lineage4.9 None
ERR3439432 Other None
ERR3797061 Other None
ERR3797015 HR-TB None
ERR3797017 Other None
ERR3797014 Other None
ERR3797044 Other None
ERR3797060 Other La1.8.1 None
ERR400345 Other lineage4 None
ERR400320 Sensitive lineage4 None
ERR3797083 HR-TB None
ERR3799304 Other lineage6.1.1 None
ERR400326 Sensitive lineage4 None
ERR400336 Sensitive lineage4 None
ERR4024991 Other None
ERR405219 HR-TB lineage4;lineage3.1 None
ERR403298 HR-TB lineage4 None
ERR4769521 HR-TB None
ERR4178226 Sensitive lineage4 None
ERR4188247 HR-TB None
ERR4797264 Sensitive None
ERR4796929 Sensitive lineage4 None
ERR4797193 HR-TB lineage1.1.2 None
ERR4798431 HR-TB None
ERR4797313 HR-TB None
ERR4797474 Other None
ERR4798099 Other None
ERR4797350 Sensitive lineage4.9 None
ERR4798406 HR-TB None
ERR4798648 HR-TB lineage3.1.2 None
ERR4798504 Other lineage3 None
ERR4799378 Sensitive lineage4 None
ERR4799547 Sensitive lineage2.2.1 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR4811030 Sensitive None
ERR4811031 Sensitive lineage4.5 None
ERR6198317 Other La1.2 None
ERR4812155 Sensitive None
ERR702404 HR-TB None
ERR6358951 HR-TB lineage4 None
ERR6358991 HR-TB None
ERR6865502 Sensitive lineage4 None
ERR6866410 Sensitive None
ERR6866547 Sensitive lineage4 None
ERR6866807 HR-TB lineage4 None
ERR6358837 HR-TB None
ERR6866022 Other None
ERR6866125 Sensitive lineage4.1.2.1 None
ERR6866639 Other None
ERR736875 HR-TB lineage4 None
ERR736817 HR-TB lineage4.3.4 None
ERR736835 HR-TB None
ERR736865 HR-TB None
ERR736848 HR-TB None
ERR736856 HR-TB lineage4 None
ERR772255 MDR-TB lineage4.3.2 None
ERR8975532 HR-TB lineage4.3.2.1 None
ERR7911670 Pre-XDR-TB lineage2.2 None
ERR8479578 Sensitive lineage1.1.3.1 None
ERR7821163 Other lineage2.2.1 None
ERR987722 HR-TB None
ERR9119669 HR-TB None
ERR9786384 Sensitive lineage4.1.2.1 None
ERR9786656 Sensitive lineage4.1.2.1 None
ERR9787014 Other lineage6.1.1 None
ERR9787153 Other lineage6.1.3 None
ERR9634265 Sensitive None
SRR069978 Pre-XDR-TB lineage2.2.2 None
ERR9896144 Other lineage3 None
ERR987729 HR-TB lineage3.1.2.2;lineage3.1.2.1 None
ERR9896153 RR-TB lineage4.4.1.1 None
SRR1172717 Other lineage4.9 None
SRR11462861 Other La1.8.1 None
SRR1172310 HR-TB None
SRR10315751 MDR-TB lineage4.8 None
SRR10808805 Sensitive None
SRR10809074 Sensitive lineage4 None
SRR1174897 HR-TB None
SRR1175500 MDR-TB lineage4 None
SRR1175487 Sensitive lineage4.9 None
SRR1180147 Other lineage2.2.1.1 None
SRR1180137 Other lineage2.2.1 None
SRR1180148 Sensitive lineage4.9 None
SRR1175506 Sensitive lineage4.9 None
SRR1175512 Sensitive lineage4.9 None
SRR1175513 Other lineage4.9 None
SRR1180250 Other lineage4.9 None
SRR1180172 Other lineage2.2.1 None
SRR1180270 Other lineage2.2.1 None
SRR1180319 Sensitive lineage4.9 None
SRR1180300 Sensitive lineage4.9 None
SRR1180312 Sensitive lineage4.9 None
SRR1180355 Sensitive lineage4.9 None
SRR1180345 Other lineage4.9 None
SRR1180391 Sensitive lineage4.9 None
SRR1180375 Sensitive lineage4.9 None
SRR1180399 Sensitive lineage4.9 None
SRR1180413 Sensitive lineage4.9 None
SRR1180406 Sensitive lineage4.9 None
SRR1180410 Sensitive lineage4.9;lineage2.2 None
SRR1180444 Sensitive lineage4.9 None
SRR1180420 Sensitive lineage4.9 None
SRR1181020 Other lineage2.2.1 None
SRR1180977 Sensitive lineage4.9 None
SRR1181091 Other lineage2.2.1.1 None
SRR1181214 Other lineage4.9 None
SRR1181325 Sensitive lineage4.9 None
SRR1181283 Sensitive lineage4.9 None
SRR1181237 Sensitive lineage2.2 None
SRR1181349 Sensitive lineage4.4.1.1.1 None
SRR1181351 Sensitive lineage4.9 None
SRR1183145 Other lineage2.2.1 None
SRR1181390 Sensitive lineage2 None
SRR1183054 Sensitive lineage4.9 None
SRR1183144 Other lineage2.2.1 None
SRR1181402 Sensitive lineage4.9 None
SRR1183106 Other lineage2.2.1.1 None
SRR1184021 Sensitive lineage4.9 None
SRR1184024 Other lineage2.2.1.1 None
SRR12006550 Other lineage1.2.1.2 None
SRR13591342 HR-TB lineage4.1.1.3 None
SRR12416840 MDR-TB lineage4.9 None
SRR13583478 HR-TB lineage4.3.4.1 None
SRR13837507 HR-TB lineage4.9 None
SRR1510066 Other lineage1.2.1.2.1 None
SRR17832802 HR-TB lineage3 None
SRR1791747 Other La1.8.1 None
SRR2010299 Pre-XDR-TB lineage2.2.1 None
SRR19295647 Sensitive lineage4.9 None