lineage | Count |
---|---|
lineage2.2.1 | 15 |
lineage9;lineage3.1 | 1 |
lineage4.2;La1.7 | 1 |
lineage4.9 | 50 |
lineage4.9;La1 | 1 |
La1.2 | 2 |
lineage4.9;lineage4.6.3 | 1 |
lineage4 | 25 |
lineage1.1.1.1 | 1 |
101 | |
lineage4.1.1.3 | 2 |
lineage4.8 | 2 |
lineage3 | 4 |
lineage1.1.2 | 2 |
lineage4.7 | 1 |
lineage4.1.1.2 | 1 |
lineage4.2.1 | 2 |
lineage5.1.4 | 1 |
lineage3.1.2 | 2 |
lineage4.3.3 | 1 |
lineage4.1.2.1 | 5 |
lineage2.2 | 5 |
lineage4.3.4.1 | 3 |
lineage3.1 | 2 |
La2 | 1 |
lineage4.1.2 | 2 |
lineage4.4.1.1;lineage1.2.2.1 | 1 |
lineage4.3.4.1;La1.7 | 1 |
La1.8.1 | 3 |
lineage6.1.1 | 2 |
lineage4;lineage3.1 | 1 |
lineage4.5 | 1 |
lineage4.3.4 | 1 |
lineage4.3.2 | 1 |
lineage4.3.2.1 | 1 |
lineage1.1.3.1 | 1 |
lineage6.1.3 | 1 |
lineage2.2.2 | 1 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage4.4.1.1 | 1 |
lineage2.2.1.1 | 4 |
lineage4.9;lineage2.2 | 1 |
lineage4.4.1.1.1 | 1 |
lineage2 | 1 |
lineage1.2.1.2 | 1 |
lineage1.2.1.2.1 | 1 |
spoligotype | Count |
---|---|
None | 260 |
ID | Drug resistance | Lineage | Country iso2 | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR23961542 | Other | lineage4.9;La1 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR23961549 | Other | La1.2 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR3675455 | Sensitive | lineage4 | None | SRR26399255 | Sensitive | lineage2.2.1 | None | SRR26399491 | Sensitive | lineage1.1.1.1 | None | SRR3675472 | Sensitive | lineage4.9 | None | ERR176778 | HR-TB | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR176779 | HR-TB | None | SRR3675477 | Other | lineage4.9 | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3675488 | HR-TB | None | ERR158583 | HR-TB | None | SRR3675229 | Other | lineage4 | None | SRR3675222 | Other | None | SRR3675279 | Other | None | SRR3675247 | Other | lineage4.9 | None | SRR3675501 | HR-TB | None | SRR3675234 | Other | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675387 | Sensitive | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675318 | Other | lineage4.9 | None | SRR3675312 | HR-TB | lineage4 | None | ERR181887 | HR-TB | None | ERR176740 | HR-TB | None | SRR3675502 | Other | None | ERR176751 | HR-TB | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675550 | Other | None | ERR212123 | Other | None | ERR212121 | HR-TB | None | SRR3675571 | HR-TB | None | ERR4816466 | HR-TB | None | ERR4816656 | HR-TB | None | SRR3675510 | Other | None | SRR3675522 | Other | None | SRR3675547 | Other | lineage4.9 | None | SRR3675577 | Sensitive | lineage4.9 | None | SRR3675574 | HR-TB | None | ERR4816470 | Other | lineage3 | None | ERR1035162 | Other | None | SRR8380944 | Sensitive | lineage1.1.2 | None | SRR6045503 | HR-TB | None | ERR2514692 | Other | None | SRR5341470 | HR-TB | None | ERR2693230 | Other | None | ERR2513217 | Sensitive | lineage4.7 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4818929 | HR-TB | None | ERR2512770 | Other | lineage4.2.1 | None | ERR2513283 | Other | lineage5.1.4 | None | SRR5341418 | Other | None | SRR5341296 | Sensitive | lineage4.9 | None | ERR1023509 | Other | None | ERR2693231 | Other | None | ERR2693254 | Other | None | ERR2693257 | Other | None | SRR6046141 | Other | lineage4.9 | None | SRR6045519 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045010 | Other | lineage4 | None | SRR6045892 | Sensitive | None | SRR6044838 | Other | lineage4.9 | None | ERR2693232 | Other | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6046397 | Other | None | SRR6045327 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6045399 | Other | None | SRR6046225 | HR-TB | None | SRR6046245 | Other | lineage4.9 | None | ERR4797694 | Sensitive | lineage3.1.2 | in | SRR6046482 | HR-TB | None | ERR4830353 | Other | None | SRR6046644 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6831950 | Other | lineage4.3.3 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6511621 | HR-TB | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4831638 | Sensitive | None | SRR6832249 | Other | lineage2.2.1 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR11465597 | Sensitive | lineage4.1.2.1 | None | ERR294266 | HR-TB | None | ERR502889 | Other | None | ERR323034 | HR-TB | lineage3.1 | None | ERR502524 | HR-TB | La2 | None | ERR323036 | HR-TB | None | SRR8217918 | HR-TB | None | SRR9970980 | Other | lineage4.1.2 | None | ERR323038 | HR-TB | None | SRR7496471 | Sensitive | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR323041 | HR-TB | None | SRR9971114 | Other | lineage2.2.1 | None | ERR323039 | HR-TB | None | ERR323055 | HR-TB | None | ERR323045 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323053 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR323063 | HR-TB | None | ERR1063859 | HR-TB | None | ERR067681 | HR-TB | None | ERR1034652 | Other | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063857 | HR-TB | None | ERR11465714 | Other | lineage4.4.1.1;lineage1.2.2.1 | None | ERR133986 | HR-TB | None | ERR11465802 | Other | lineage4.3.4.1;La1.7 | None | ERR3283017 | HR-TB | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283040 | HR-TB | None | ERR3283024 | Other | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3439432 | Other | None | ERR3797061 | Other | None | ERR3797015 | HR-TB | None | ERR3797017 | Other | None | ERR3797014 | Other | None | ERR3797044 | Other | None | ERR3797060 | Other | La1.8.1 | None | ERR400345 | Other | lineage4 | None | ERR400320 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR3799304 | Other | lineage6.1.1 | None | ERR400326 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR4024991 | Other | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR403298 | HR-TB | lineage4 | None | ERR4769521 | HR-TB | None | ERR4178226 | Sensitive | lineage4 | None | ERR4188247 | HR-TB | None | ERR4797264 | Sensitive | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4798431 | HR-TB | None | ERR4797313 | HR-TB | None | ERR4797474 | Other | None | ERR4798099 | Other | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4798406 | HR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4798504 | Other | lineage3 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811030 | Sensitive | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR6198317 | Other | La1.2 | None | ERR4812155 | Sensitive | None | ERR702404 | HR-TB | None | ERR6358951 | HR-TB | lineage4 | None | ERR6358991 | HR-TB | None | ERR6865502 | Sensitive | lineage4 | None | ERR6866410 | Sensitive | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866807 | HR-TB | lineage4 | None | ERR6358837 | HR-TB | None | ERR6866022 | Other | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR6866639 | Other | None | ERR736875 | HR-TB | lineage4 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736835 | HR-TB | None | ERR736865 | HR-TB | None | ERR736848 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8975532 | HR-TB | lineage4.3.2.1 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR987722 | HR-TB | None | ERR9119669 | HR-TB | None | ERR9786384 | Sensitive | lineage4.1.2.1 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9634265 | Sensitive | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | ERR9896144 | Other | lineage3 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | SRR1172717 | Other | lineage4.9 | None | SRR11462861 | Other | La1.8.1 | None | SRR1172310 | HR-TB | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR10808805 | Sensitive | None | SRR10809074 | Sensitive | lineage4 | None | SRR1174897 | HR-TB | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR13591342 | HR-TB | lineage4.1.1.3 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13837507 | HR-TB | lineage4.9 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR17832802 | HR-TB | lineage3 | None | SRR1791747 | Other | La1.8.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR19295647 | Sensitive | lineage4.9 | None |
---|