Rv0668 - c.3549C>T


Drug resistance types
54 Sensitive 10 RR-TB 65 HR-TB 32 MDR-TB 4 Pre-XDR-TB 3 XDR-TB 91 Other
lineage Counts
lineage Count
La1.7;M.canetti;lineage4.9 5
lineage1;lineage4.9 1
lineage4.9 78
lineage4.2;lineage4.9 1
La1.7 2
lineage2.1;lineage4.9;lineage6.3 2
M.canetti;lineage4.2;lineage4.9 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
lineage4.2;lineage4.6.3;lineage4.9.1 2
La1.7.X-unk4;lineage4.9 1
La1.6;La3;M.canetti;lineage4.2.2 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 4
lineage4.6.3;lineage4.9 3
La1.7;lineage4.9 6
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La2;lineage4.9 2
lineage2.2.1;lineage4 1
La3;M.canetti;lineage2.1;lineage4.9 12
lineage1.1.1.1 1
lineage4.9;lineage9 2
La1.7;lineage3.1;lineage4 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage4.1.1.3 3
lineage4.3.2 1
M.canetti;lineage2.2.2;lineage6.2 2
lineage3 5
lineage2.2.1 12
lineage4 3
lineage6.1.1 2
lineage2.1;lineage4.3.2;lineage4.9 1
lineage4.1.2.1 3
lineage4.9;lineage6.3 3
La2;lineage4.9;lineage9 1
La1.7.1;lineage4.9 1
La1;lineage4.9 2
lineage1.2.1.2.1 1
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
La3;lineage4.9 2
lineage4.3.4.1 3
lineage4.1.2 2
M.canetti;lineage4.9 4
La1.2 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
lineage2.2.1.1 4
La3;M.canetti;lineage3.1 1
lineage5.1.4 1
M.canetti;lineage2.1;lineage4.9;lineage6.3 2
4
M.canetti;lineage2.1;lineage4.9 1
M.canetti;lineage2.2 2
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 1
M.canetti;lineage4.9;lineage9 1
La2;lineage2.2 1
La1.6;La3;M.canetti;lineage4.2;lineage4.9 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
lineage4.6.3;lineage4.9;lineage6.3 1
lineage4.3.2.1 1
lineage3.1.2.2 1
lineage6.1.3 1
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
lineage1.1.3.1 1
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 3
La3;lineage2.1;lineage4.9;lineage6.3 1
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 1
La1.7;lineage4.2 1
lineage3.1.2.1 2
lineage2.2.1;lineage4.9 1
lineage1.2.2.1;lineage4.4.1.1 1
lineage4.3.2;lineage4.9 1
lineage4.2;lineage4.6.3;lineage4.9 1
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 1
M.canetti;lineage4.6.4;lineage4.9 1
lineage3.1;lineage9 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
lineage4.5 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
La3;M.canetti;lineage2.1;lineage3.1 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
La3;M.canetti;lineage4.9 1
La1.6;La3;lineage4.6.4;lineage4.9 1
La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 1
La1.7;lineage4.3.4.1 1
lineage4.1.1.2 1
La1.7.1;La1.7.X-unk4 1
lineage1.1.2 1
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
lineage4.8 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
lineage4.3 1
lineage3.1.2 2
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
lineage4.2;lineage4.8.1;lineage4.9 1
M.canetti;lineage4.2 1
M.canetti;lineage2.1 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
spoligotype Counts
spoligotype Count
None 259
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR3675505 Other La1.7;M.canetti;lineage4.9 None
ERR4797350 Sensitive lineage1;lineage4.9 None
SRR29096410 Other lineage4.9 None
ERR4828872 Sensitive lineage4.2;lineage4.9 None
SRR3675222 Other La1.7 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4811030 Sensitive lineage4.9 None
SRR3675571 HR-TB M.canetti;lineage4.2;lineage4.9 None
ERR3283024 Other La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
SRR1180300 Sensitive lineage4.9 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
ERR2693245 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR3797083 RR-TB lineage4.9 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
SRR3675492 Other La1.7;lineage4.9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR323039 HR-TB La2;lineage4.9 None
SRR1181237 Sensitive lineage2.2.1;lineage4 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR926162 Sensitive lineage4.9 None
ERR4830353 Other La1.7 None
SRR26399491 Sensitive lineage1.1.1.1 None
SRR6045526 Other lineage4.9 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
ERR400345 Other lineage4.9 None
SRR29096879 Sensitive lineage4.9 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR11662694 Other lineage4.9 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SAMEA2533358 MDR-TB lineage4.1.1.3 None
ERR772255 MDR-TB lineage4.3.2 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR4798504 RR-TB lineage3 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
SRR7496471 Sensitive lineage4 None
ERR9787014 Other lineage6.1.1 None
SRR29231479 RR-TB lineage4.9 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
ERR9786656 Sensitive lineage4.1.2.1 None
ERR9896144 Other lineage3 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
SRR23961542 Other La1;lineage4.9 None
SRR1510066 Other lineage1.2.1.2.1 None
SRR1180977 Sensitive lineage4.9 None
SRR1181349 Sensitive lineage4 None
ERR4817731 HR-TB lineage4.9 None
ERR971389 Sensitive lineage4.9 None
SRR8217918 HR-TB lineage4.9 None
ERR3290633 Other lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
SRR29097066 Sensitive lineage4.9 None
SRR3675247 Other lineage4.9 None
SRR9971114 Other lineage2.2.1 None
SRR3675441 Other lineage4.9 None
SRR28119827 Other La3;lineage4.9 None
SRR29096291 Sensitive lineage2.2.1 None
ERR11465352 Sensitive lineage4.3.4.1 None
SRR9970980 Other lineage4.1.2 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
SRR3675488 Other La1.7;lineage4.9 None
SRR6044819 Sensitive lineage4.9 None
SRR23961549 Other La1.2 None
SRR5341418 Other La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
SRR1183144 Other lineage2.2.1 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1183106 RR-TB lineage2.2.1.1 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
SRR1180270 Other lineage2.2.1 None
ERR2513283 Sensitive lineage5.1.4 None
SRR6046196 Other La1.7;M.canetti;lineage4.9 None
SRR26159047 Other lineage4.6.3;lineage4.9 None
SRR3675554 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR2514692 Other None
ERR473314 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6044815 Other lineage4.9 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR1180355 Sensitive lineage4.9 None
SRR6046397 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR3675510 Sensitive La3;lineage4.9 None
ERR133986 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
ERR323060 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6046141 Other lineage4.9 None
SRR1180410 Sensitive lineage4.9 None
ERR502524 HR-TB lineage4.9;lineage6.3 None
ERR6866807 Other lineage4.9 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
ERR3797029 Other lineage4.9 None
SRR3675385 Other La1.7;lineage4.9 None
ERR2026698 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR2693257 Other La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
ERR11465597 Sensitive lineage4.1.2.1 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR550636 MDR-TB lineage4.1.1.3 None
ERR1063839 MDR-TB La2;lineage2.2 None
ERR5311079 Other La1.6;La3;M.canetti;lineage4.2;lineage4.9 None
ERR9119669 HR-TB lineage4.9 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR4188247 HR-TB lineage4.9 None
ERR4820773 HR-TB lineage4.9 None
ERR323036 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675279 Sensitive lineage4.9 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
ERR4769521 RR-TB lineage4.9 None
ERR8975532 HR-TB lineage4.3.2.1 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3799304 Other lineage6.1.1 None
ERR4816470 HR-TB lineage3 None
ERR4798648 MDR-TB lineage3.1.2.2 None
ERR6358991 HR-TB None
ERR161037 Other lineage4.9 None
ERR3283016 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR9787153 Other lineage6.1.3 None
SRR6046245 Other lineage4.9 None
SRR10808805 Other La1;lineage4.9 None
SRR6511621 Sensitive lineage4.9 None
ERR1035162 Other M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
ERR400336 Sensitive lineage4.9 None
SRR6045371 Other lineage4.9 None
ERR926163 Other lineage4.9 None
SRR6045399 Other M.canetti;lineage4.9 None
ERR3283032 Other lineage4.9 None
SRR12416840 MDR-TB lineage4.9 None
ERR926159 Sensitive lineage4.9 None
ERR9786384 Sensitive lineage4.1.2.1 None
ERR4819877 HR-TB lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4799378 Sensitive lineage4.9 None
SRR29096387 Sensitive M.canetti;lineage4.9 None
SRR13583478 HR-TB lineage4.3.4.1 None
SRR12416842 HR-TB lineage4.9 None
ERR1023509 Other lineage4.9 None
ERR8479578 Sensitive lineage1.1.3.1 None
ERR4816656 Other lineage4.9 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
SRR3675449 Other M.canetti;lineage4.9 None
SRR6046824 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR176751 Other lineage4.9 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR11465353 Sensitive lineage4.3.4.1 None
SRR26399255 Sensitive lineage2.2.1 None
SRR29097026 Other lineage4.9 None
SRR1184024 RR-TB lineage2.2.1.1 None
SRR1183111 HR-TB lineage4.9 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR3675234 Other La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR23961559 Other La1.7;lineage4.2 None
SRR28868424 Sensitive lineage3.1.2.1 None
SRR1181390 Sensitive lineage2.2.1;lineage4.9 None
SRR1183145 Other lineage2.2.1 None
ERR4796929 Sensitive lineage4.9 None
ERR3797014 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR3675390 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR987722 MDR-TB None
SRR28044873 Pre-XDR-TB lineage3 None
ERR11465714 Other lineage1.2.2.1;lineage4.4.1.1 None
ERR736865 HR-TB lineage4.3.2;lineage4.9 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
ERR926165 Sensitive lineage4.9 None
ERR5311097 Sensitive lineage4.2;lineage4.6.3;lineage4.9 None
ERR5311098 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR3439432 Other M.canetti;lineage4.6.4;lineage4.9 None
ERR4819241 Other lineage4.9 None
SRR1175506 Sensitive lineage4.9 None
SRR25827418 XDR-TB lineage3.1;lineage9 None
ERR4818929 HR-TB lineage4.9 None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
SRR1172310 HR-TB lineage4.9 None
ERR323063 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4811031 Sensitive lineage4.5 None
ERR067681 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
SRR3675522 Other lineage4.9 None
ERR400320 Sensitive lineage4.9 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
SRR3675501 Other La1.7;lineage4.9 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
ERR2026697 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR2693231 Other La1.6;La3;lineage4.6.4;lineage4.9 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675455 Sensitive lineage4.9 None
ERR5311103 RR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 None
ERR4799547 HR-TB lineage2.2.1 None
SRR3675473 Sensitive lineage4.9 None
SRR3675446 RR-TB lineage4.9 None
ERR1063857 MDR-TB La2;lineage4.9 None
SRR3675267 Other La1.7;lineage4.9 None
ERR926160 Sensitive lineage4.9 None
ERR736856 Sensitive lineage4.9 None
SRR10809074 Sensitive lineage4.9 None
ERR3797015 HR-TB lineage4.9 None
ERR212123 Other lineage4.9 None
ERR13266684 Pre-XDR-TB lineage2.2.1 None
SRR3675461 RR-TB lineage4.9 None
ERR11465802 Other La1.7;lineage4.3.4.1 None
ERR4818252 Sensitive lineage4.1.1.2 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
ERR4797193 HR-TB lineage1.1.2 None
SRR29096174 Sensitive La1.7;lineage4.9 None
SRR3675248 Other lineage4.9 None
ERR1063846 HR-TB lineage4.9 None
ERR400326 Other lineage4.9 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
SRR10315751 MDR-TB lineage4.8 None
SRR6046644 HR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
ERR4815441 HR-TB lineage4.9 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
SRR12006550 Sensitive None
ERR867542 HR-TB lineage4.3 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR29096659 Sensitive lineage4.9 None
ERR987729 HR-TB lineage3.1.2.1 None
SRR17832802 HR-TB lineage3 None
ERR4816478 HR-TB lineage4 None
ERR13266892 MDR-TB lineage3.1.2 None
ERR4816466 HR-TB lineage4.9 None
SRR2010299 Pre-XDR-TB lineage2.2.1 None
SRR3675387 Other lineage4.9 None
SRR13591342 HR-TB lineage4.1.1.3 None
SRR1181091 Other lineage2.2.1.1 None
ERR4812155 Other lineage4.9 None
SRR3675229 Sensitive lineage4.9 None
ERR926164 Other lineage4.9 None
SRR9970978 Sensitive lineage4.1.2 None
SRR29096150 Other lineage4.9 None
SRR6832249 Sensitive lineage2.2.1 None
ERR4797694 Sensitive lineage3.1.2 in
SRR3675494 RR-TB lineage4.9 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
ERR176740 Other lineage4.9 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR6046225 Other lineage4.9;lineage6.3 None
SRR1180147 Other lineage2.2.1.1 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
ERR323041 HR-TB M.canetti;lineage2.1 None
ERR323038 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR11252558 Other lineage4.6.3;lineage4.9 None
ERR126600 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4797313 Sensitive lineage2.2.1 None
ERR502889 Other La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
ERR323047 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4819422 HR-TB lineage4.9 None
ERR736875 HR-TB lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None