lineage | Count |
---|---|
67 | |
lineage4.9 | 26 |
lineage3 | 4 |
lineage4 | 30 |
lineage4.1 | 2 |
lineage4.1.1.2 | 1 |
lineage4.2.1 | 1 |
lineage5.1.4 | 1 |
lineage2.2.1 | 11 |
lineage4.8 | 2 |
lineage2.2 | 4 |
lineage4.6.2.2 | 2 |
lineage4.3.4.1 | 2 |
lineage4.1.2 | 2 |
La1.8.1 | 2 |
La1.2 | 2 |
lineage1.1.2 | 1 |
lineage4.5 | 1 |
lineage4.3.2.1 | 1 |
lineage1.2.2.1 | 1 |
lineage1.1.3.1 | 1 |
lineage4.8;lineage4.1 | 2 |
lineage1.2.1.2 | 1 |
lineage7;lineage2.2.1.2 | 1 |
lineage4.9;La1 | 1 |
spoligotype | Count |
---|---|
None | 169 |
ID | Drug resistance | Lineage | Country iso2 | SRR3675279 | Other | None | SRR3675284 | HR-TB | lineage4.9 | None | SRR3675318 | Other | lineage4.9 | None | SRR3675387 | Sensitive | None | SRR3675456 | HR-TB | None | SRR3675502 | Other | None | SRR3675550 | Other | None | SRR3675522 | Other | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675547 | Other | lineage4.9 | None | SRR3675577 | Sensitive | lineage4.9 | None | SRR3675555 | HR-TB | None | ERR4816470 | Other | lineage3 | None | ERR4815815 | Sensitive | lineage4 | None | ERR2446566 | Other | lineage4.1 | None | ERR1035162 | Other | None | ERR2513259 | Other | lineage3 | None | ERR4818252 | Other | lineage4.1.1.2 | None | SRR5341418 | Other | None | ERR2512770 | Other | lineage4.2.1 | None | ERR2513283 | Other | lineage5.1.4 | None | ERR1023509 | Other | None | SRR5341296 | Sensitive | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341323 | Sensitive | lineage4 | None | ERR2660539 | Other | lineage4.9 | None | SRR5341330 | HR-TB | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR5535933 | HR-TB | None | SRR6046141 | Other | lineage4.9 | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6045053 | Other | None | SRR6045217 | Other | lineage4 | None | SRR6046046 | Other | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR6511621 | HR-TB | None | SRR6046397 | Other | None | SRR6046824 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | SRR6046482 | HR-TB | None | SRR6046492 | Other | None | ERR4831117 | HR-TB | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR294266 | HR-TB | None | ERR4831638 | Sensitive | None | SRR6832787 | RR-TB | lineage2.2.1 | None | SRR6832249 | Other | lineage2.2.1 | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR7496471 | Sensitive | None | ERR502889 | Other | None | ERR3273109 | MDR-TB | lineage4 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR1023525 | HR-TB | lineage4 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR133825 | Sensitive | lineage4 | None | ERR133986 | HR-TB | None | SRR9970980 | Other | lineage4.1.2 | None | ERR323107 | Other | lineage4 | None | ERR067681 | HR-TB | None | ERR1063896 | Sensitive | None | ERR3283014 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3283028 | Other | None | ERR3283055 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3445504 | HR-TB | None | ERR3439432 | Other | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797046 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797060 | Other | La1.8.1 | None | ERR3797087 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797063 | HR-TB | None | ERR3797079 | Sensitive | lineage4 | None | ERR387051 | HR-TB | None | ERR4024991 | Other | None | ERR400320 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR4769452 | HR-TB | None | ERR403298 | HR-TB | lineage4 | None | ERR4188247 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4797264 | Sensitive | None | ERR4769497 | HR-TB | La1.2 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4797313 | HR-TB | None | ERR4797474 | Other | None | ERR4799025 | Pre-XDR-TB | None | ERR4798099 | Other | None | ERR4798406 | HR-TB | None | ERR6358979 | Other | None | ERR4799378 | Sensitive | lineage4 | None | ERR4811030 | Sensitive | None | ERR4811493 | HR-TB | None | ERR4812155 | Sensitive | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR12015085 | Other | lineage4.8 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR6866022 | Other | None | ERR6866410 | Sensitive | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866639 | Other | None | ERR736831 | HR-TB | lineage4.9 | None | ERR8975532 | HR-TB | lineage4.3.2.1 | None | ERR736848 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR7821210 | Sensitive | lineage1.2.2.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9634265 | Sensitive | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9119669 | HR-TB | None | ERR9786076 | Sensitive | lineage3 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR990545 | Other | lineage3 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786843 | Other | None | SRR10808399 | Sensitive | lineage4 | None | SRR10808805 | Sensitive | None | SRR10809074 | Sensitive | lineage4 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR14801749 | Sensitive | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR13837507 | HR-TB | lineage4.9 | None | SRR14782405 | HR-TB | None | SRR1791747 | Other | La1.8.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR20632814 | Sensitive | lineage4 | None | SRR23961542 | Other | lineage4.9;La1 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR23961549 | Other | La1.2 | None | SRR3675455 | Sensitive | lineage4 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR3675477 | Other | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | ERR158583 | HR-TB | None | SRR3675229 | Other | lineage4 | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675270 | HR-TB | None |
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