lineage | Count |
---|---|
lineage2.2.1 | 13 |
lineage4 | 48 |
91 | |
lineage2.2.1.2 | 2 |
lineage2.2 | 6 |
lineage4.4.1.1.1 | 1 |
lineage2.2.1.1 | 1 |
lineage4.9 | 23 |
lineage4.2.1 | 1 |
La1.8.1 | 2 |
La1.7.1 | 1 |
lineage7;lineage2.2.1.2 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage1.2.1.1 | 1 |
lineage3.1.3 | 1 |
lineage4.1.1.2 | 1 |
lineage3 | 2 |
lineage4.2.1.1 | 1 |
lineage4.1.2 | 1 |
lineage4.3.4.2.1 | 1 |
lineage4.3.2.1 | 1 |
lineage4.4.1.2 | 1 |
lineage4.4.2 | 1 |
La1 | 1 |
lineage4;lineage3.1 | 1 |
lineage2.2.2 | 1 |
lineage4.3.4 | 1 |
lineage4.5 | 1 |
lineage1.1.3.1 | 1 |
lineage4.1.2.1 | 1 |
spoligotype | Count |
---|---|
None | 210 |
ID | Drug resistance | Lineage | Country iso2 | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR10808399 | Sensitive | lineage4 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR10808805 | Sensitive | None | SRR10809074 | Sensitive | lineage4 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR14782405 | HR-TB | None | SRR14801749 | Sensitive | None | SRR1791747 | Other | La1.8.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR20632814 | Sensitive | lineage4 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR26399239 | Sensitive | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | ERR158583 | HR-TB | None | ERR176779 | HR-TB | None | ERR176778 | HR-TB | None | SRR3675502 | Other | None | SRR3675234 | Other | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR4816466 | HR-TB | None | SRR3675270 | HR-TB | None | ERR181887 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | ERR212138 | HR-TB | lineage4 | None | ERR181824 | HR-TB | lineage4 | None | SRR3675246 | Sensitive | lineage4 | None | ERR176651 | HR-TB | None | SRR3675312 | HR-TB | lineage4 | None | SRR3675550 | Other | None | ERR4816656 | HR-TB | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR1035162 | Other | None | ERR4818607 | Sensitive | lineage4.9 | None | ERR4819051 | Other | lineage4 | None | ERR4818929 | HR-TB | None | ERR3275709 | HR-TB | lineage3 | nl | SRR5341453 | Sensitive | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR6359082 | Other | lineage4.9 | None | ERR4819623 | Sensitive | lineage4.9 | None | SRR5341418 | Other | None | ERR1023509 | Other | None | SRR5341330 | HR-TB | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR2693238 | HR-TB | lineage4.9 | None | ERR2693231 | Other | None | SRR6045450 | Other | lineage4.9 | None | ERR2693230 | Other | None | ERR2693254 | Other | None | SRR6045555 | HR-TB | None | ERR2693257 | Other | None | ERR4821655 | Sensitive | lineage4 | None | SRR5535933 | HR-TB | None | SRR6045519 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6046133 | HR-TB | None | ERR2693232 | Other | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6044780 | Other | lineage4.9 | None | SRR6044890 | Other | lineage4.9 | None | SRR6045053 | Other | None | SRR6044838 | Other | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045010 | Other | lineage4 | None | SRR6045399 | Other | None | SRR6045217 | Other | lineage4 | None | SRR6046046 | Other | None | SRR6046210 | Other | lineage4 | None | SRR6046482 | HR-TB | None | SRR6046362 | HR-TB | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6046460 | HR-TB | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046824 | HR-TB | None | SRR6046492 | Other | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046878 | HR-TB | lineage4 | None | ERR4831117 | HR-TB | None | SRR6511621 | HR-TB | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR6832249 | Other | lineage2.2.1 | None | ERR502510 | Sensitive | lineage4 | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | ERR502889 | Other | None | SRR7496471 | Sensitive | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR323108 | HR-TB | lineage4 | None | ERR323045 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323066 | Sensitive | lineage4 | None | DRR188519 | Other | lineage4.4.2 | None | ERR067681 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR1034634 | HR-TB | None | ERR1023525 | HR-TB | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR1063855 | Other | lineage4 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1034652 | Other | None | ERR1035122 | Sensitive | None | ERR1063859 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1063858 | HR-TB | None | ERR1063857 | HR-TB | None | ERR1063896 | Sensitive | None | ERR133825 | Sensitive | lineage4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283010 | Other | La1 | None | ERR133986 | HR-TB | None | ERR137286 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283025 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283028 | Other | None | ERR3283024 | Other | None | ERR3283040 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3439432 | Other | None | ERR3797014 | Other | None | ERR3797015 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797017 | Other | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797048 | HR-TB | None | ERR3797060 | Other | La1.8.1 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797044 | Other | None | ERR3797063 | HR-TB | None | ERR3797061 | Other | None | ERR405209 | Sensitive | lineage4 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797086 | Other | lineage4.9 | None | ERR3797087 | Sensitive | lineage4 | None | ERR4024991 | Other | None | ERR403298 | HR-TB | lineage4 | None | ERR4769452 | HR-TB | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR473332 | Other | lineage4 | None | ERR4188247 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4769521 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4796577 | MDR-TB | None | ERR4796929 | Sensitive | lineage4 | None | ERR4798099 | Other | None | ERR4797264 | Sensitive | None | ERR4797474 | Other | None | ERR4799025 | Pre-XDR-TB | None | ERR4798406 | HR-TB | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4811493 | HR-TB | None | ERR6866022 | Other | None | ERR5987364 | Pre-XDR-TB | lineage2.2.2 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6866410 | Sensitive | None | ERR6866807 | HR-TB | lineage4 | None | ERR6866639 | Other | None | ERR736848 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736856 | HR-TB | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR736875 | HR-TB | lineage4 | None | ERR752229 | Other | lineage4.5 | None | ERR751326 | Sensitive | lineage4 | None | ERR9119669 | HR-TB | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None |
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