lineage | Count |
---|---|
lineage4 | 60 |
lineage2.2.1 | 15 |
138 | |
lineage4.5 | 2 |
lineage4.9 | 43 |
lineage1.1.3.1 | 1 |
lineage4.1.3 | 2 |
lineage6.3.1 | 1 |
lineage4.1.2.1 | 3 |
lineage6.1.1 | 2 |
lineage4.6.2.2 | 1 |
lineage2.2.1.1 | 4 |
lineage3 | 4 |
La1.8.1 | 1 |
lineage1.1.2 | 1 |
lineage2.2 | 1 |
lineage2 | 1 |
lineage4.1 | 3 |
lineage4.9;La3 | 1 |
lineage4.9;lineage4.6.3 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage2.1 | 1 |
lineage4.1.1 | 1 |
lineage4.1.1.2 | 1 |
lineage5.1.4 | 1 |
lineage4.9;lineage2.1 | 1 |
lineage4.2.1 | 1 |
La2 | 1 |
lineage4.1.2 | 2 |
lineage4.7 | 1 |
lineage4.8 | 1 |
lineage4.3.2.1 | 1 |
lineage4.4.2 | 1 |
La1.2 | 1 |
lineage3.1.2 | 1 |
spoligotype | Count |
---|---|
None | 303 |
ID | Drug resistance | Lineage | Country iso2 | ERR4799378 | Sensitive | lineage4 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4811022 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4811030 | Sensitive | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR6358979 | Other | None | ERR4811142 | MDR-TB | None | ERR4811105 | HR-TB | None | ERR4812155 | Sensitive | None | ERR5336148 | Other | None | ERR6358837 | HR-TB | None | ERR6358951 | HR-TB | lineage4 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6358991 | HR-TB | None | ERR6359045 | HR-TB | None | ERR6865502 | Sensitive | lineage4 | None | ERR6866639 | Other | None | ERR6866410 | Sensitive | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866022 | Other | None | ERR736865 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR9786604 | Other | None | ERR751326 | Sensitive | lineage4 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9117709 | HR-TB | None | ERR8976043 | HR-TB | None | ERR9634265 | Sensitive | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786843 | Other | None | SRR10808399 | Sensitive | lineage4 | None | ERR987722 | HR-TB | None | SRR10315567 | Other | lineage2.2.1 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR10808805 | Sensitive | None | SRR10809074 | Sensitive | lineage4 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1172310 | HR-TB | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR1173568 | Other | lineage4.9 | None | SRR1174897 | HR-TB | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1175508 | Other | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR12142341 | HR-TB | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR13861439 | RR-TB | lineage4.9 | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR14801749 | Sensitive | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR1640750 | HR-TB | None | SRR15368973 | Other | None | SRR17832802 | HR-TB | lineage3 | None | SRR1791747 | Other | La1.8.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR20632814 | Sensitive | lineage4 | None | SRR25827682 | Other | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR26159043 | Other | lineage4.9 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR3675455 | Sensitive | lineage4 | None | SRR3675472 | Sensitive | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3675477 | Other | lineage4.9 | None | SRR3675465 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675482 | HR-TB | None | ERR158583 | HR-TB | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3675488 | HR-TB | None | SRR3675486 | HR-TB | None | SRR3675222 | Other | None | SRR3675210 | Sensitive | lineage4.9 | None | SRR3675221 | HR-TB | None | SRR3675229 | Other | lineage4 | None | SRR3675249 | Sensitive | lineage4.9 | None | SRR3675234 | Other | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675236 | HR-TB | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675270 | HR-TB | None | SRR3675266 | Sensitive | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | SRR3675283 | Sensitive | lineage4.9 | None | SRR3675279 | Other | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675312 | HR-TB | lineage4 | None | SRR3675311 | Other | None | SRR3675318 | Other | lineage4.9 | None | SRR3675387 | Sensitive | None | SRR3675501 | HR-TB | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675502 | Other | None | SRR3675522 | Other | None | SRR3675542 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | SRR3675547 | Other | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1 | None | SRR3675548 | Sensitive | lineage4.9 | None | SRR3675553 | Sensitive | lineage4.9 | None | SRR3675545 | HR-TB | None | ERR212001 | HR-TB | None | ERR212034 | HR-TB | None | SRR3675550 | Other | None | SRR3675558 | HR-TB | None | SRR3675577 | Sensitive | lineage4.9 | None | SRR3675571 | HR-TB | None | SRR3675574 | HR-TB | None | ERR4816470 | Other | lineage3 | None | ERR4816466 | HR-TB | None | ERR4816656 | HR-TB | None | SRR4033900 | HR-TB | lineage2.2.1 | None | SRR5341425 | Other | lineage4 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4818929 | HR-TB | None | ERR2513283 | Other | lineage5.1.4 | None | SRR5341396 | Other | lineage4 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4818536 | Other | lineage4.9 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341387 | Other | lineage4 | None | SRR5341418 | Other | None | ERR4819462 | Other | lineage4 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR5341298 | Sensitive | lineage4 | None | ERR2514552 | Sensitive | lineage3 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR5341469 | Other | lineage4 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR2693231 | Other | None | SRR5341470 | HR-TB | None | SRR6045526 | HR-TB | None | ERR2693239 | HR-TB | None | ERR2693230 | Other | None | SRR6045503 | HR-TB | None | ERR2693257 | Other | None | ERR2693254 | Other | None | SRR6045519 | HR-TB | None | SRR5535933 | HR-TB | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR2660539 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6044790 | HR-TB | None | SRR6044890 | Other | lineage4.9 | None | SRR6046133 | HR-TB | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6044876 | Sensitive | lineage4 | None | SRR6046046 | Other | None | SRR6045053 | Other | None | SRR6046210 | Other | lineage4 | None | SRR6046245 | Other | lineage4.9 | None | SRR6045327 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6045399 | Other | None | SRR6046225 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046305 | Other | lineage4.9 | None | ERR278594 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6325447 | HR-TB | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR6046802 | Other | lineage4 | None | SRR6046824 | HR-TB | None | SRR6046897 | Sensitive | lineage4 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6511621 | HR-TB | None | ERR323036 | HR-TB | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR4831638 | Sensitive | None | ERR294248 | HR-TB | None | SRR6832249 | Other | lineage2.2.1 | None | SRR6789626 | Other | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR502889 | Other | None | ERR294266 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | ERR502524 | HR-TB | La2 | None | ERR5311090 | HR-TB | None | ERR502943 | HR-TB | None | SRR7496509 | Other | None | ERR5311081 | HR-TB | None | ERR5311099 | HR-TB | None | SRR7496517 | Other | None | SRR9970980 | Other | lineage4.1.2 | None | SRR7496523 | Other | lineage4.7 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR323039 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR323053 | HR-TB | None | ERR323063 | HR-TB | None | ERR1035122 | Sensitive | None | ERR323066 | Sensitive | lineage4 | None | DRR188519 | Other | lineage4.4.2 | None | ERR067699 | HR-TB | lineage4 | None | ERR1034652 | Other | None | ERR323085 | Sensitive | lineage4 | None | ERR067681 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283024 | Other | None | ERR133825 | Sensitive | lineage4 | None | ERR133986 | HR-TB | None | ERR137286 | Sensitive | lineage4 | None | ERR3283017 | HR-TB | None | ERR3283027 | HR-TB | None | ERR363456 | Sensitive | lineage4 | None | ERR3439432 | Other | None | ERR3283036 | HR-TB | None | ERR3468544 | HR-TB | None | ERR373945 | HR-TB | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR3797044 | Other | None | ERR3797036 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797014 | Other | None | ERR3797017 | Other | None | ERR400336 | Sensitive | lineage4 | None | ERR3797082 | Other | lineage4.9 | None | ERR400320 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR3797061 | Other | None | ERR3797069 | Other | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4024991 | Other | None | ERR400345 | Other | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR403298 | HR-TB | lineage4 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4407463 | HR-TB | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4188350 | HR-TB | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769452 | HR-TB | None | ERR4798431 | HR-TB | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4797313 | HR-TB | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4797474 | Other | None | ERR4798099 | Other | None | ERR4798406 | HR-TB | None | ERR4798504 | Other | lineage3 | None | ERR4798648 | HR-TB | lineage3.1.2 | None |
---|