Rv0668 - c.3474T>G
Drug resistance types
72 Sensitive
7 RR-TB
21 HR-TB
16 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
57 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 87 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| La1.7;lineage4.2 | 1 |
| La1.7;M.canetti;lineage4.9 | 3 |
| M.canetti;lineage4.2 | 1 |
| lineage2.2.1.1 | 2 |
| lineage2.2.1 | 7 |
| 1 | |
| lineage4.9;lineage7 | 3 |
| La3;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.6.4;lineage4.9 | 2 |
| lineage1;lineage4.9 | 1 |
| La1.7;lineage4.9 | 6 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| La1.7 | 2 |
| lineage4.3.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage4.3.4.1 | 1 |
| lineage3.1.2.2 | 1 |
| lineage1.1.2 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage6.1.1 | 2 |
| lineage4.9.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.6.4;lineage4.9 | 1 |
| lineage3 | 5 |
| lineage4.1.1.1 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| lineage2.2.1;lineage4 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage2.2.2 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage9 | 2 |
| M.canetti;lineage1 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.5 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage2;lineage4.9 | 1 |
| lineage4 | 2 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 174 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675229 | Sensitive | lineage4.9 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR3675390 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | SRR28351488 | MDR-TB | lineage2.2.1 | None | ERR987722 | MDR-TB | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR28119827 | Other | La3;lineage4.9 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | SRR6046141 | Other | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR3439432 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | SRR3675586 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR29097026 | Other | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR387051 | Other | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR369163 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | ERR363498 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR1172717 | Sensitive | lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR176741 | Other | lineage4.9 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR4830353 | Other | La1.7 | None | SRR3675446 | RR-TB | lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR29356658 | Sensitive | lineage4.3.3 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR11465802 | Other | La1.7;lineage4.3.4.1 | None | ERR363449 | Sensitive | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR400326 | Other | lineage4.9 | None | SRR1181328 | Other | lineage2.2.1 | None | SRR29096150 | Other | lineage4.9 | None | SRR8380944 | Sensitive | lineage1.1.2 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR363499 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675441 | Other | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR6832249 | Sensitive | lineage2.2.1 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR373947 | Other | lineage4.9 | None | ERR11465189 | RR-TB | lineage4.9.1 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR4188322 | Other | lineage4.6.4;lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR17832802 | HR-TB | lineage3 | None | ERR2693252 | Sensitive | lineage4.9 | None | ERR4820112 | Sensitive | lineage4.1.1.1 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR3675222 | Other | La1.7 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | ERR987729 | HR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | SRR1180375 | Sensitive | lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | DRR185102 | Sensitive | lineage2.2.1.1 | vn | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR18910194 | HR-TB | lineage2.2.2 | None | ERR400345 | Other | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4816470 | HR-TB | lineage3 | None | ERR4798504 | RR-TB | lineage3 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | ERR363502 | Other | lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR363447 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR6044838 | Other | lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | ERR400529 | Other | lineage3 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR363474 | Sensitive | lineage4.9 | None | SRR7496471 | Sensitive | lineage4 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | SRR3675387 | Other | lineage4.9 | None |
|---|
