EBG00000313325 - n.90T>C
Drug resistance types
4 Sensitive
1 RR-TB
2 HR-TB
6 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
222 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.8.1 | 212 |
| lineage2.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage2.2.1.1 | 2 |
| lineage4.9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| lineage2.2.1 | 3 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| M.canetti;lineage4.2 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 2 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.3.4.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 235 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR7069067 | Other | La1.8.1 | None | ERR4187701 | Other | La1.8.1 | None | ERR2512956 | Other | La1.8.1 | gb | ERR3439304 | Other | La1.8.1 | None | ERR4187724 | Sensitive | La1.8.1 | None | ERR4188244 | Other | La1.8.1 | None | ERR3468483 | Other | La1.8.1 | None | SRR7069913 | Other | La1.8.1 | None | ERR3439291 | Other | La1.8.1 | None | ERR3468475 | Other | La1.8.1 | None | ERR4188043 | Other | La1.8.1 | None | ERR3797019 | Other | La1.8.1 | None | ERR4818094 | Other | La1.8.1 | gb | ERR2693244 | Other | La1.8.1 | None | ERR4188304 | Other | La1.8.1 | None | ERR4188259 | Other | La1.8.1 | None | ERR2693241 | Other | La1.8.1 | None | SRR3135071 | Other | La1.8.1 | None | ERR5162097 | Other | La1.8.1 | None | ERR4188074 | Other | La1.8.1 | None | ERR3797030 | Other | La1.8.1 | None | ERR4188183 | Other | La1.8.1 | None | ERR3283050 | Other | La1.8.1 | None | ERR4187989 | Other | La1.8.1 | None | ERR4188251 | Other | La1.8.1 | None | ERR4188273 | Other | La1.8.1 | None | ERR4188191 | Other | La1.8.1 | None | ERR4188242 | Other | La1.8.1 | None | ERR4814772 | Other | La1.8.1 | None | ERR4187998 | Other | La1.8.1 | None | ERR702406 | Other | lineage2.1 | None | ERR4188165 | Other | La1.8.1 | None | ERR2693235 | Other | La1.8.1 | None | ERR3468474 | Other | La1.8.1 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | SRR1180147 | Other | lineage2.2.1.1 | None | ERR5162104 | Other | La1.8.1 | None | ERR3797022 | Other | La1.8.1 | None | ERR4188069 | Other | La1.8.1 | None | ERR4188339 | Other | La1.8.1 | None | ERR4821826 | Other | La1.8.1 | None | SRR3675502 | Sensitive | lineage4.9 | None | ERR5162059 | Other | La1.8.1 | None | ERR4187808 | Other | La1.8.1 | None | ERR4187814 | Other | La1.8.1 | None | ERR3439558 | Other | La1.8.1 | None | ERR3439296 | Other | La1.8.1 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR4188270 | Other | La1.8.1 | None | ERR032132 | Other | La1.8.1 | None | ERR4188182 | Other | La1.8.1 | None | ERR4627310 | Other | La1.8.1 | None | ERR3797031 | Other | La1.8.1 | None | ERR4188370 | Other | La1.8.1 | None | ERR4188405 | Other | La1.8.1 | None | ERR2747643 | Other | La1.8.1 | None | ERR3797020 | Other | La1.8.1 | None | ERR4188052 | Other | La1.8.1 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR3797027 | Other | La1.8.1 | None | ERR3797037 | Other | La1.8.1 | None | ERR2747635 | Sensitive | La1.8.1 | None | ERR4188262 | Other | La1.8.1 | None | ERR4187727 | Other | La1.8.1 | None | ERR016863 | Other | La1.8.1 | None | ERR4188264 | Other | La1.8.1 | None | ERR3797009 | Other | La1.8.1 | None | ERR3797026 | Other | La1.8.1 | None | SRR1181251 | Other | lineage2.2.1 | None | ERR016865 | Other | La1.8.1 | None | ERR4188401 | Other | La1.8.1 | None | ERR4187748 | Other | La1.8.1 | None | ERR4187658 | Other | La1.8.1 | None | ERR4817597 | Other | La1.8.1 | None | ERR2693256 | Other | La1.8.1 | None | ERR4188277 | Other | La1.8.1 | None | ERR4188055 | Other | La1.8.1 | None | ERR4187897 | Other | La1.8.1 | None | ERR4187692 | Other | La1.8.1 | None | ERR4188001 | Other | La1.8.1 | None | ERR2514955 | Other | La1.8.1 | gb | ERR2693240 | Other | La1.8.1 | None | ERR2512931 | Other | La1.8.1 | gb | ERR4188042 | Other | La1.8.1 | None | ERR4188238 | Other | La1.8.1 | None | SRR1181328 | Other | lineage2.2.1 | None | ERR2514285 | Other | La1.8.1 | gb | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR2693255 | Other | La1.8.1 | None | ERR2693253 | Other | La1.8.1 | None | ERR4188034 | Other | La1.8.1 | None | ERR4187691 | Other | La1.8.1 | None | ERR3468433 | Other | La1.8.1 | None | ERR3439583 | Other | La1.8.1 | None | ERR3468721 | Other | La1.8.1 | None | ERR4187654 | Other | La1.8.1 | None | ERR2512954 | Other | La1.8.1 | gb | ERR2514191 | Other | La1.8.1 | gb | ERR3797040 | Other | La1.8.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | ERR3439288 | Other | La1.8.1 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR4816007 | Other | La1.8.1 | gb | SRR7617441 | Other | La1.8.1 | None | ERR4188157 | Other | La1.8.1 | None | ERR4187733 | Other | La1.8.1 | None | ERR4187736 | Other | La1.8.1 | None | ERR3797033 | Other | La1.8.1 | None | ERR4188267 | Other | La1.8.1 | None | ERR2512732 | Other | La1.8.1 | gb | ERR4188283 | Other | La1.8.1 | None | ERR3283029 | Other | La1.8.1 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | ERR4187823 | Other | La1.8.1 | None | ERR5162118 | Other | La1.8.1 | None | ERR3283007 | Other | La1.8.1 | None | ERR4188291 | Other | La1.8.1 | None | ERR4188256 | Other | La1.8.1 | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR3439290 | Other | La1.8.1 | None | ERR3468442 | Other | La1.8.1 | None | ERR3797008 | Other | La1.8.1 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR4187666 | Other | La1.8.1 | None | ERR4187821 | Other | La1.8.1 | None | ERR4188059 | Other | La1.8.1 | None | ERR3797025 | Other | La1.8.1 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR4187651 | Other | La1.8.1 | None | ERR4188300 | Other | La1.8.1 | None | ERR3439591 | Other | La1.8.1 | None | ERR3797034 | Other | La1.8.1 | None | ERR5162130 | Other | La1.8.1 | None | ERR3797006 | Other | La1.8.1 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR4187726 | Other | La1.8.1 | None | ERR4187799 | Other | La1.8.1 | None | ERR4187805 | Other | La1.8.1 | None | ERR4187629 | Other | La1.8.1 | None | ERR4188046 | Other | La1.8.1 | None | ERR4188186 | Other | La1.8.1 | None | SRR7069982 | Other | La1.8.1 | None | ERR5162056 | Other | La1.8.1 | None | ERR4187802 | Other | La1.8.1 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR4188175 | Other | La1.8.1 | None | ERR4188349 | Other | La1.8.1 | None | ERR4187928 | Other | La1.8.1 | None | SRR7070224 | Other | La1.8.1 | None | ERR2747639 | Other | La1.8.1 | None | ERR3439293 | Other | La1.8.1 | None | ERR4188301 | Other | La1.8.1 | None | ERR3439299 | Other | La1.8.1 | None | ERR4187987 | Other | La1.8.1 | None | ERR4188195 | Other | La1.8.1 | None | ERR4188306 | Other | La1.8.1 | None | ERR4188434 | Other | La1.8.1 | None | ERR3439292 | Other | La1.8.1 | None | ERR4188338 | Other | La1.8.1 | None | ERR4187843 | Other | La1.8.1 | None | ERR4188357 | Other | La1.8.1 | None | ERR3797077 | Other | La1.8.1 | None | ERR2693247 | Other | La1.8.1 | None | ERR032134 | Other | La1.8.1 | None | ERR4187662 | Other | La1.8.1 | None | ERR4188000 | Other | La1.8.1 | None | ERR3439306 | Other | La1.8.1 | None | ERR3468469 | Other | La1.8.1 | None | ERR4188289 | Other | La1.8.1 | None | ERR2693248 | Other | La1.8.1 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR3439560 | Other | La1.8.1 | None | ERR4188039 | Other | La1.8.1 | None | ERR3797021 | Other | La1.8.1 | None | ERR5087922 | Other | La1.8.1 | None | ERR5162089 | Other | La1.8.1 | None | ERR5162134 | Other | La1.8.1 | None | ERR3797032 | Other | La1.8.1 | None | ERR3439287 | Other | La1.8.1 | None | ERR3468495 | Other | La1.8.1 | None | ERR4187723 | Other | La1.8.1 | None | ERR2747640 | Other | La1.8.1 | None | ERR4187826 | Other | La1.8.1 | None | ERR3797073 | Other | La1.8.1 | None | ERR3797053 | Other | La1.8.1 | None | ERR8975532 | HR-TB | lineage4.3.2.1 | None | ERR3439444 | Other | La1.8.1 | None | ERR3797007 | Other | La1.8.1 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR3797045 | Other | La1.8.1 | None | ERR4188328 | Other | La1.8.1 | None | ERR4188168 | Other | La1.8.1 | None | ERR4188206 | Other | La1.8.1 | None | ERR2512962 | Other | La1.8.1 | gb | SRR6832249 | Sensitive | lineage2.2.1 | None | ERR2693266 | Other | La1.8.1 | None | ERR5162084 | Other | La1.8.1 | None | ERR4188254 | Other | La1.8.1 | None | ERR2512676 | Other | La1.8.1 | None | ERR2747598 | Other | La1.8.1 | None | ERR3439473 | Other | La1.8.1 | None | ERR2693236 | Other | La1.8.1 | None | ERR4187854 | Other | La1.8.1 | None | ERR4821856 | Other | La1.8.1 | gb | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR3797054 | Other | La1.8.1 | None | ERR4187747 | Other | La1.8.1 | None | ERR4188216 | Other | La1.8.1 | None | ERR4188365 | Other | La1.8.1 | None | ERR4188412 | Other | La1.8.1 | None | ERR2693233 | Other | La1.8.1 | None | ERR2693246 | Other | La1.8.1 | None | ERR3439310 | Other | La1.8.1 | None | ERR2514583 | Other | La1.8.1 | gb | ERR4188049 | Other | La1.8.1 | None | ERR3439295 | Other | La1.8.1 | None | ERR4188436 | Other | La1.8.1 | None | ERR3468485 | Other | La1.8.1 | None | ERR3439289 | Other | La1.8.1 | None | ERR5162107 | Other | La1.8.1 | None | ERR4188368 | Other | La1.8.1 | None | ERR4187700 | Other | La1.8.1 | None | ERR4187633 | Other | La1.8.1 | None | ERR3439565 | Other | La1.8.1 | None | ERR4187688 | Other | La1.8.1 | None | ERR4188023 | Other | La1.8.1 | None | ERR4188098 | Other | La1.8.1 | None | ERR4187647 | Other | La1.8.1 | None | ERR2693249 | Other | La1.8.1 | None | ERR3797041 | Other | La1.8.1 | None | ERR3797039 | Other | La1.8.1 | None | ERR4188164 | Other | La1.8.1 | None | ERR4627312 | Other | La1.8.1 | None |
|---|
