lineage | Count |
---|---|
lineage4.2;La1.7 | 1 |
lineage4.9;La1 | 1 |
lineage4.1.1.3 | 1 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
18 | |
lineage4.3.4.2.1 | 1 |
lineage4.3 | 1 |
lineage3.1.3 | 1 |
lineage4.1.1.2 | 1 |
lineage4.9 | 36 |
lineage4 | 9 |
lineage2.2.1 | 5 |
lineage4.1.2.1.1 | 1 |
lineage5.2 | 2 |
lineage4.6.2.2 | 2 |
lineage2.2 | 5 |
lineage4.8 | 3 |
lineage4.1 | 1 |
lineage4.1.2 | 1 |
lineage4.3.4.1 | 1 |
La1 | 2 |
La1.8.1 | 1 |
lineage1.1.2 | 1 |
lineage4.6.5 | 2 |
lineage1.1.3.1 | 1 |
lineage4.8;lineage4.1 | 2 |
lineage4.1.2.1 | 1 |
lineage3 | 1 |
lineage2.2.2 | 1 |
La3 | 1 |
lineage4.9;lineage2.2 | 1 |
lineage4.4.1.1.1 | 1 |
lineage2 | 1 |
lineage4.4.2 | 1 |
spoligotype | Count |
---|---|
None | 109 |
ID | Drug resistance | Lineage | Country iso2 | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR23961542 | Other | lineage4.9;La1 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR212001 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR176643 | HR-TB | None | ERR176751 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR212033 | HR-TB | None | SRR3675574 | HR-TB | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | ERR4819051 | Other | lineage4 | None | ERR2514692 | Other | None | SRR6045526 | HR-TB | None | ERR2514821 | Other | lineage2.2.1 | None | SRR6045892 | Sensitive | None | SRR6044780 | Other | lineage4.9 | None | ERR4972574 | MDR-TB | lineage4.1.2.1.1 | None | SRR6046225 | HR-TB | None | SRR6045327 | HR-TB | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR12015086 | Other | lineage4.8 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR323048 | Pre-XDR-TB | lineage4.9 | None | ERR323107 | Other | lineage4 | None | ERR12015084 | Other | lineage4.8 | None | ERR3283040 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283010 | Other | La1 | None | ERR3283021 | HR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR4796929 | Sensitive | lineage4 | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR3797015 | HR-TB | None | ERR3797019 | Other | La1.8.1 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR6866410 | Sensitive | None | ERR12015085 | Other | lineage4.8 | None | ERR6866547 | Sensitive | lineage4 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR736839 | Other | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9786843 | Other | None | SRR10808805 | Sensitive | None | ERR990545 | Other | lineage3 | None | ERR9992784 | Pre-XDR-TB | lineage2.2.2 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1167384 | Other | lineage4 | None | SRR1172717 | Other | lineage4.9 | None | SRR1169249 | Other | La3 | None | SRR1169306 | Other | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1183049 | Other | lineage2.2 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR15316595 | RR-TB | lineage4.4.2 | None |
---|