Rv3596c - c.2103G>C
Drug resistance types
53 Sensitive
8 RR-TB
42 HR-TB
23 MDR-TB
3 Pre-XDR-TB
1 XDR-TB
68 Other
lineage Counts
| lineage | Count |
|---|---|
| La1;lineage4.1.2 | 1 |
| lineage4.9 | 92 |
| lineage4.9;lineage7 | 2 |
| lineage3.1 | 1 |
| lineage2.2.1 | 10 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage2.2.1.1 | 1 |
| M.canetti;lineage4.2 | 1 |
| lineage2.2 | 4 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| La1;lineage4.9 | 3 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.1.1.3;lineage4.9 | 2 |
| M.canetti;lineage4.6.4;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| La2;lineage2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 2 |
| La1.7.1 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage1.1.2 | 2 |
| lineage4.8 | 6 |
| La2;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.1.2.1 | 3 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage4 | 3 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage4.3.4.2.1 | 3 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.6.4;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage4.6.2.2 | 1 |
| lineage2.1 | 1 |
| lineage1.1.1 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage4.3.3 | 1 |
| lineage4.1.2 | 1 |
| La1.8.1 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| lineage6.1.3 | 1 |
| La1.7;lineage4.9 | 1 |
| La1.2;La1.8.1 | 1 |
| lineage4.1.1.2 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage4.4.1.2 | 1 |
| lineage6.1.2 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage3.1;lineage9 | 1 |
| lineage2.2.1.2;lineage7 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.5 | 1 |
| 1 | |
| La1.7.X-unk4;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage3 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La3;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 198 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Variant Proportion
Hover over a Country 0–0.1
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 |
|---|---|---|---|
| SRR9970978 | Sensitive | La1;lineage4.1.2 | None |
| ERR2660539 | Other | lineage4.9 | None |
| SRR29055944 | Sensitive | lineage4.9 | None |
| ERR4831117 | HR-TB | lineage4.9;lineage7 | None |
| ERR3797046 | HR-TB | lineage4.9 | None |
| SRR28351442 | HR-TB | lineage3.1 | None |
| SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR373947 | Other | lineage4.9 | None |
| ERR736834 | Sensitive | lineage4.9 | None |
| SRR3675585 | Sensitive | lineage4.9 | None |
| SRR5341298 | Sensitive | lineage4.9 | None |
| SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None |
| SRR1180147 | Other | lineage2.2.1.1 | None |
| ERR403298 | MDR-TB | M.canetti;lineage4.2 | None |
| ERR4797264 | Sensitive | lineage4.9 | None |
| ERR4796929 | Sensitive | lineage4.9 | None |
| ERR4815815 | Sensitive | lineage4.9 | None |
| SRR5341469 | HR-TB | lineage4.9 | None |
| SRR20970016 | Other | lineage2.2 | None |
| SRR3675390 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None |
| SRR10808730 | Other | lineage4.9 | None |
| ERR4769497 | Other | La1;lineage4.9 | None |
| SRR19295647 | Sensitive | lineage4.9 | None |
| ERR3445502 | Sensitive | lineage4.9;lineage7 | None |
| ERR4797474 | Sensitive | lineage4.9 | None |
| ERR6866022 | Other | lineage4.8;lineage4.9 | None |
| SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None |
| SRR6046878 | Other | lineage4.9 | None |
| SRR3675586 | Other | M.canetti;lineage4.6.4;lineage4.9 | None |
| SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None |
| SRR7535082 | Sensitive | lineage4.9 | None |
| ERR323062 | Sensitive | lineage4.9 | None |
| ERR323066 | Sensitive | lineage4.9 | None |
| ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None |
| ERR736872 | HR-TB | lineage4.9 | None |
| ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None |
| ERR4810624 | MDR-TB | lineage2.2 | None |
| ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None |
| SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None |
| ERR1063839 | MDR-TB | La2;lineage2.2 | None |
| SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None |
| SRR1159378 | Other | lineage4.9 | None |
| ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None |
| ERR502943 | Sensitive | lineage2.2.1;lineage4 | None |
| SRR1792478 | HR-TB | La1.7.1 | None |
| SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None |
| SRR5341310 | Other | lineage1.1.2 | None |
| SRR5341300 | HR-TB | lineage4.9 | None |
| ERR363479 | Sensitive | lineage4.9 | None |
| ERR108125 | RR-TB | lineage4.9 | None |
| ERR323115 | Sensitive | lineage4.9 | None |
| SRR5341425 | Other | lineage4.9 | None |
| ERR4798099 | Other | lineage4.9 | None |
| ERR4799025 | Other | lineage4.8 | None |
| ERR1063857 | MDR-TB | La2;lineage4.9 | None |
| SRR10809074 | Sensitive | lineage4.9 | None |
| SRR16156817 | Other | lineage4.9 | None |
| SRR6045347 | Other | lineage4.9 | None |
| ERR12015085 | Other | lineage4.8 | None |
| SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None |
| ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None |
| SRR10315567 | HR-TB | lineage2.2.1 | None |
| SRR15014655 | Other | M.canetti;lineage1 | None |
| SRR5341461 | HR-TB | lineage4.9 | None |
| ERR2041726 | MDR-TB | lineage4.1.2.1 | None |
| SRR6511621 | Sensitive | lineage4.9 | None |
| ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None |
| ERR3273109 | HR-TB | lineage4 | None |
| ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None |
| ERR108471 | HR-TB | lineage4.9 | None |
| ERR245794 | HR-TB | lineage4.3.4.2.1 | None |
| SRR5341453 | Other | lineage4.9 | None |
| ERR6866639 | Other | lineage4.9 | None |
| ERR1023509 | Other | lineage4.9 | None |
| ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None |
| SRR14782405 | HR-TB | lineage4.9 | None |
| ERR4769452 | Other | lineage4.9 | None |
| ERR2041725 | MDR-TB | lineage4.1.2.1 | None |
| ERR6359082 | Other | lineage4.9 | None |
| SRR5341299 | HR-TB | lineage4.9 | None |
| SRR2010299 | MDR-TB | lineage2.2.1 | None |
| ERR4024991 | Other | lineage4.8;lineage4.9 | None |
| SRR11662690 | HR-TB | lineage4.9 | None |
| SRR5341387 | Other | lineage4.9 | None |
| SRR28351339 | MDR-TB | lineage4 | None |
| ERR369159 | Sensitive | lineage4.9 | None |
| ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None |
| ERR4188322 | Other | lineage4.6.4;lineage4.9 | None |
| ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None |
| SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None |
| ERR4819809 | HR-TB | lineage4.6.2.2 | None |
| ERR4831618 | MDR-TB | lineage2.1 | None |
| ERR6866807 | Other | lineage4.9 | None |
| DRR261137 | Other | lineage1.1.1 | None |
| ERR4811030 | Sensitive | lineage4.9 | None |
| ERR363453 | Sensitive | lineage4.9 | None |
| SRR9971114 | Other | lineage2.2.1 | None |
| ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None |
| SRR6044875 | Sensitive | lineage4.9 | None |
| SRR9971041 | MDR-TB | lineage4.3.3 | None |
| SRR9970980 | HR-TB | lineage4.1.2 | None |
| SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None |
| SRR6045053 | Other | lineage4 | None |
| SRR1791747 | Other | La1.8.1 | None |
| SRR20969708 | HR-TB | lineage2.2 | None |
| ERR12015086 | RR-TB | lineage4.8 | None |
| SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None |
| SRR6046577 | Other | lineage4.6.3;lineage4.9 | None |
| SRR6046046 | Other | lineage4.9 | None |
| ERR4817667 | HR-TB | lineage4.8 | None |
| ERR11466072 | Sensitive | lineage4.3.4.2.1 | None |
| ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None |
| ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None |
| ERR9787256 | Other | lineage6.1.3 | None |
| ERR736856 | Sensitive | lineage4.9 | None |
| ERR13264981 | Sensitive | La1.7;lineage4.9 | None |
| SRR14782054 | Other | lineage4.9 | None |
| SRR5341384 | HR-TB | lineage4.9 | None |
| SRR5341366 | Sensitive | lineage4.9 | None |
| SRR7240033 | Other | La1.2;La1.8.1 | None |
| SRR14801749 | HR-TB | lineage4.9 | None |
| SRR29097058 | Other | lineage4.9 | None |
| ERR4818252 | Sensitive | lineage4.1.1.2 | None |
| ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None |
| SRR9970981 | RR-TB | lineage4.3.2.1 | None |
| SRR6046720 | HR-TB | lineage4.9;lineage9 | None |
| SRR10808805 | Other | La1;lineage4.9 | None |
| ERR751326 | Other | lineage4.9 | None |
| ERR3283021 | HR-TB | lineage4.9 | None |
| ERR363509 | Sensitive | lineage4.9 | None |
| ERR4816466 | HR-TB | lineage4.9 | None |
| ERR323056 | HR-TB | lineage4.4.1.2 | None |
| ERR4797193 | HR-TB | lineage1.1.2 | None |
| ERR473332 | Other | lineage4.9 | None |
| SRR9970979 | Sensitive | lineage4.8 | None |
| SRR5341308 | Sensitive | lineage4.9 | None |
| SRR5341467 | Other | lineage4.9 | None |
| ERR4799513 | HR-TB | lineage2.2 | None |
| ERR323085 | Sensitive | lineage4.9 | None |
| ERR9787030 | RR-TB | lineage6.1.2 | None |
| SRR29017081 | Sensitive | lineage4.9 | None |
| SRR5341456 | Other | lineage4.9 | None |
| ERR4811493 | HR-TB | lineage4.9 | None |
| SRR1183965 | Sensitive | lineage4.9 | None |
| SRR28351342 | HR-TB | lineage2.2.1;lineage4 | None |
| ERR3283055 | HR-TB | lineage4.9 | None |
| ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None |
| SRR6045217 | Sensitive | lineage4.9 | None |
| ERR4796254 | Sensitive | lineage4.9 | None |
| ERR3445504 | Other | lineage4.9;lineage6.1.3 | None |
| SRR1158918 | Sensitive | lineage4.9 | None |
| SRR25827418 | XDR-TB | lineage3.1;lineage9 | None |
| ERR12015084 | Other | lineage4.8 | None |
| ERR137286 | Other | lineage4.9 | None |
| SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None |
| ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None |
| ERR752229 | Other | lineage4.5 | None |
| ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None |
| SRR12142339 | HR-TB | lineage2.2.1 | None |
| ERR1063896 | Sensitive | None | |
| SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None |
| ERR4831620 | MDR-TB | lineage2.2.1 | None |
| SRR5535933 | Other | lineage4.9 | None |
| ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None |
| ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None |
| SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR20969731 | Other | lineage2.2.1 | None |
| ERR363506 | Sensitive | lineage4.9 | None |
| SRR6045548 | Sensitive | lineage4.9 | None |
| ERR323107 | Sensitive | lineage4.9 | None |
| SRR6046492 | Other | lineage4.9 | None |
| ERR4831616 | MDR-TB | lineage2.2.1 | None |
| SRR3675235 | Sensitive | lineage4.9 | None |
| SRR29097004 | Other | lineage3 | None |
| ERR373945 | Sensitive | lineage4.9 | None |
| ERR4769521 | RR-TB | lineage4.9 | None |
| ERR1063883 | HR-TB | lineage4.9 | None |
| SRR5341330 | Other | lineage4.9 | None |
| SRR6046593 | Other | lineage4.9 | None |
| ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR4769450 | Other | lineage4.9 | None |
| ERR4797184 | Sensitive | lineage4.9 | None |
| ERR124636 | Sensitive | lineage4.9 | None |
| SRR29231479 | RR-TB | lineage4.9 | None |
| ERR4814639 | HR-TB | lineage4.9 | None |
| ERR11465235 | Sensitive | lineage4.3.4.2.1 | None |
| SRR5341303 | Sensitive | lineage4.9 | None |
| ERR4799378 | Sensitive | lineage4.9 | None |
| ERR11465232 | Sensitive | lineage4.1.2.1 | None |
| ERR1035122 | Sensitive | lineage4.9 | None |
| SRR12416842 | HR-TB | lineage4.9 | None |
| ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None |
| ERR133825 | HR-TB | La1;lineage4.9 | None |
| ERR3797047 | MDR-TB | lineage4.9 | None |
| SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None |
| SRR3675246 | Other | lineage4.9 | None |
| ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None |
| SRR28119827 | Other | La3;lineage4.9 | None |
