lineage | Count |
---|---|
La1;lineage4.1.2 | 1 |
lineage4.9 | 92 |
lineage4.9;lineage7 | 2 |
lineage3.1 | 1 |
lineage2.2.1 | 10 |
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
lineage2.2.1.1 | 1 |
M.canetti;lineage4.2 | 1 |
lineage2.2 | 4 |
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
La1;lineage4.9 | 3 |
lineage4.8;lineage4.9 | 2 |
lineage4.1.1.3;lineage4.9 | 2 |
M.canetti;lineage4.6.4;lineage4.9 | 1 |
lineage2.1;lineage4.9;lineage6.3 | 1 |
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
M.canetti;lineage4.9;lineage9 | 1 |
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
La2;lineage2.2 | 1 |
La1.6;La3;M.canetti;lineage4.2.2 | 1 |
La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
lineage2.2.1;lineage4 | 2 |
La1.7.1 | 1 |
M.canetti;lineage4.2;lineage4.9 | 1 |
lineage1.1.2 | 2 |
lineage4.8 | 6 |
La2;lineage4.9 | 1 |
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
La1;lineage2;lineage4.9 | 1 |
M.canetti;lineage1 | 1 |
lineage4.1.2.1 | 3 |
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
lineage4 | 3 |
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
lineage4.3.4.2.1 | 3 |
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
lineage4.6.4;lineage4.9 | 1 |
La1.7;M.canetti;lineage4.9 | 1 |
lineage4.6.2.2 | 1 |
lineage2.1 | 1 |
lineage1.1.1 | 1 |
lineage4.2.1.1;lineage4.3.3 | 1 |
lineage4.3.3 | 1 |
lineage4.1.2 | 1 |
La1.8.1 | 1 |
lineage4.3.1;lineage4.9;lineage6 | 1 |
lineage4.6.3;lineage4.9 | 1 |
lineage2.1;lineage4.9 | 1 |
La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
lineage6.1.3 | 1 |
La1.7;lineage4.9 | 1 |
La1.2;La1.8.1 | 1 |
lineage4.1.1.2 | 1 |
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
lineage4.3.2.1 | 1 |
lineage4.9;lineage9 | 1 |
lineage4.4.1.2 | 1 |
lineage6.1.2 | 1 |
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
lineage4.9;lineage6.1.3 | 1 |
lineage3.1;lineage9 | 1 |
lineage2.2.1.2;lineage7 | 1 |
La1.7;lineage4.9;lineage6 | 1 |
lineage4.5 | 1 |
1 | |
La1.7.X-unk4;lineage4.9 | 1 |
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
lineage3 | 1 |
La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
La1.7.1;La1.7.X-unk4;lineage7 | 1 |
La3;lineage4.9 | 1 |
spoligotype | Count |
---|---|
None | 198 |
ID | Drug resistance | Lineage | Country iso2 |
---|---|---|---|
SRR9970978 | Sensitive | La1;lineage4.1.2 | None |
ERR2660539 | Other | lineage4.9 | None |
SRR29055944 | Sensitive | lineage4.9 | None |
ERR4831117 | HR-TB | lineage4.9;lineage7 | None |
ERR3797046 | HR-TB | lineage4.9 | None |
SRR28351442 | HR-TB | lineage3.1 | None |
SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None |
ERR373947 | Other | lineage4.9 | None |
ERR736834 | Sensitive | lineage4.9 | None |
SRR3675585 | Sensitive | lineage4.9 | None |
SRR5341298 | Sensitive | lineage4.9 | None |
SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None |
SRR1180147 | Other | lineage2.2.1.1 | None |
ERR403298 | MDR-TB | M.canetti;lineage4.2 | None |
ERR4797264 | Sensitive | lineage4.9 | None |
ERR4796929 | Sensitive | lineage4.9 | None |
ERR4815815 | Sensitive | lineage4.9 | None |
SRR5341469 | HR-TB | lineage4.9 | None |
SRR20970016 | Other | lineage2.2 | None |
SRR3675390 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None |
SRR10808730 | Other | lineage4.9 | None |
ERR4769497 | Other | La1;lineage4.9 | None |
SRR19295647 | Sensitive | lineage4.9 | None |
ERR3445502 | Sensitive | lineage4.9;lineage7 | None |
ERR4797474 | Sensitive | lineage4.9 | None |
ERR6866022 | Other | lineage4.8;lineage4.9 | None |
SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None |
SRR6046878 | Other | lineage4.9 | None |
SRR3675586 | Other | M.canetti;lineage4.6.4;lineage4.9 | None |
SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None |
SRR7535082 | Sensitive | lineage4.9 | None |
ERR323062 | Sensitive | lineage4.9 | None |
ERR323066 | Sensitive | lineage4.9 | None |
ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None |
ERR736872 | HR-TB | lineage4.9 | None |
ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None |
ERR4810624 | MDR-TB | lineage2.2 | None |
ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None |
SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None |
ERR1063839 | MDR-TB | La2;lineage2.2 | None |
SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None |
SRR1159378 | Other | lineage4.9 | None |
ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None |
ERR502943 | Sensitive | lineage2.2.1;lineage4 | None |
SRR1792478 | HR-TB | La1.7.1 | None |
SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None |
SRR5341310 | Other | lineage1.1.2 | None |
SRR5341300 | HR-TB | lineage4.9 | None |
ERR363479 | Sensitive | lineage4.9 | None |
ERR108125 | RR-TB | lineage4.9 | None |
ERR323115 | Sensitive | lineage4.9 | None |
SRR5341425 | Other | lineage4.9 | None |
ERR4798099 | Other | lineage4.9 | None |
ERR4799025 | Other | lineage4.8 | None |
ERR1063857 | MDR-TB | La2;lineage4.9 | None |
SRR10809074 | Sensitive | lineage4.9 | None |
SRR16156817 | Other | lineage4.9 | None |
SRR6045347 | Other | lineage4.9 | None |
ERR12015085 | Other | lineage4.8 | None |
SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None |
ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None |
SRR10315567 | HR-TB | lineage2.2.1 | None |
SRR15014655 | Other | M.canetti;lineage1 | None |
SRR5341461 | HR-TB | lineage4.9 | None |
ERR2041726 | MDR-TB | lineage4.1.2.1 | None |
SRR6511621 | Sensitive | lineage4.9 | None |
ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None |
ERR3273109 | HR-TB | lineage4 | None |
ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None |
ERR108471 | HR-TB | lineage4.9 | None |
ERR245794 | HR-TB | lineage4.3.4.2.1 | None |
SRR5341453 | Other | lineage4.9 | None |
ERR6866639 | Other | lineage4.9 | None |
ERR1023509 | Other | lineage4.9 | None |
ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None |
SRR14782405 | HR-TB | lineage4.9 | None |
ERR4769452 | Other | lineage4.9 | None |
ERR2041725 | MDR-TB | lineage4.1.2.1 | None |
ERR6359082 | Other | lineage4.9 | None |
SRR5341299 | HR-TB | lineage4.9 | None |
SRR2010299 | MDR-TB | lineage2.2.1 | None |
ERR4024991 | Other | lineage4.8;lineage4.9 | None |
SRR11662690 | HR-TB | lineage4.9 | None |
SRR5341387 | Other | lineage4.9 | None |
SRR28351339 | MDR-TB | lineage4 | None |
ERR369159 | Sensitive | lineage4.9 | None |
ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None |
ERR4188322 | Other | lineage4.6.4;lineage4.9 | None |
ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None |
SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None |
ERR4819809 | HR-TB | lineage4.6.2.2 | None |
ERR4831618 | MDR-TB | lineage2.1 | None |
ERR6866807 | Other | lineage4.9 | None |
DRR261137 | Other | lineage1.1.1 | None |
ERR4811030 | Sensitive | lineage4.9 | None |
ERR363453 | Sensitive | lineage4.9 | None |
SRR9971114 | Other | lineage2.2.1 | None |
ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None |
SRR6044875 | Sensitive | lineage4.9 | None |
SRR9971041 | MDR-TB | lineage4.3.3 | None |
SRR9970980 | HR-TB | lineage4.1.2 | None |
SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None |
SRR6045053 | Other | lineage4 | None |
SRR1791747 | Other | La1.8.1 | None |
SRR20969708 | HR-TB | lineage2.2 | None |
ERR12015086 | RR-TB | lineage4.8 | None |
SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None |
SRR6046577 | Other | lineage4.6.3;lineage4.9 | None |
SRR6046046 | Other | lineage4.9 | None |
ERR4817667 | HR-TB | lineage4.8 | None |
ERR11466072 | Sensitive | lineage4.3.4.2.1 | None |
ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None |
ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None |
ERR9787256 | Other | lineage6.1.3 | None |
ERR736856 | Sensitive | lineage4.9 | None |
ERR13264981 | Sensitive | La1.7;lineage4.9 | None |
SRR14782054 | Other | lineage4.9 | None |
SRR5341384 | HR-TB | lineage4.9 | None |
SRR5341366 | Sensitive | lineage4.9 | None |
SRR7240033 | Other | La1.2;La1.8.1 | None |
SRR14801749 | HR-TB | lineage4.9 | None |
SRR29097058 | Other | lineage4.9 | None |
ERR4818252 | Sensitive | lineage4.1.1.2 | None |
ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None |
SRR9970981 | RR-TB | lineage4.3.2.1 | None |
SRR6046720 | HR-TB | lineage4.9;lineage9 | None |
SRR10808805 | Other | La1;lineage4.9 | None |
ERR751326 | Other | lineage4.9 | None |
ERR3283021 | HR-TB | lineage4.9 | None |
ERR363509 | Sensitive | lineage4.9 | None |
ERR4816466 | HR-TB | lineage4.9 | None |
ERR323056 | HR-TB | lineage4.4.1.2 | None |
ERR4797193 | HR-TB | lineage1.1.2 | None |
ERR473332 | Other | lineage4.9 | None |
SRR9970979 | Sensitive | lineage4.8 | None |
SRR5341308 | Sensitive | lineage4.9 | None |
SRR5341467 | Other | lineage4.9 | None |
ERR4799513 | HR-TB | lineage2.2 | None |
ERR323085 | Sensitive | lineage4.9 | None |
ERR9787030 | RR-TB | lineage6.1.2 | None |
SRR29017081 | Sensitive | lineage4.9 | None |
SRR5341456 | Other | lineage4.9 | None |
ERR4811493 | HR-TB | lineage4.9 | None |
SRR1183965 | Sensitive | lineage4.9 | None |
SRR28351342 | HR-TB | lineage2.2.1;lineage4 | None |
ERR3283055 | HR-TB | lineage4.9 | None |
ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None |
SRR6045217 | Sensitive | lineage4.9 | None |
ERR4796254 | Sensitive | lineage4.9 | None |
ERR3445504 | Other | lineage4.9;lineage6.1.3 | None |
SRR1158918 | Sensitive | lineage4.9 | None |
SRR25827418 | XDR-TB | lineage3.1;lineage9 | None |
ERR12015084 | Other | lineage4.8 | None |
ERR137286 | Other | lineage4.9 | None |
SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None |
ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None |
ERR752229 | Other | lineage4.5 | None |
ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None |
SRR12142339 | HR-TB | lineage2.2.1 | None |
ERR1063896 | Sensitive | None | |
SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None |
ERR4831620 | MDR-TB | lineage2.2.1 | None |
SRR5535933 | Other | lineage4.9 | None |
ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None |
ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None |
SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None |
SRR20969731 | Other | lineage2.2.1 | None |
ERR363506 | Sensitive | lineage4.9 | None |
SRR6045548 | Sensitive | lineage4.9 | None |
ERR323107 | Sensitive | lineage4.9 | None |
SRR6046492 | Other | lineage4.9 | None |
ERR4831616 | MDR-TB | lineage2.2.1 | None |
SRR3675235 | Sensitive | lineage4.9 | None |
SRR29097004 | Other | lineage3 | None |
ERR373945 | Sensitive | lineage4.9 | None |
ERR4769521 | RR-TB | lineage4.9 | None |
ERR1063883 | HR-TB | lineage4.9 | None |
SRR5341330 | Other | lineage4.9 | None |
SRR6046593 | Other | lineage4.9 | None |
ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4769450 | Other | lineage4.9 | None |
ERR4797184 | Sensitive | lineage4.9 | None |
ERR124636 | Sensitive | lineage4.9 | None |
SRR29231479 | RR-TB | lineage4.9 | None |
ERR4814639 | HR-TB | lineage4.9 | None |
ERR11465235 | Sensitive | lineage4.3.4.2.1 | None |
SRR5341303 | Sensitive | lineage4.9 | None |
ERR4799378 | Sensitive | lineage4.9 | None |
ERR11465232 | Sensitive | lineage4.1.2.1 | None |
ERR1035122 | Sensitive | lineage4.9 | None |
SRR12416842 | HR-TB | lineage4.9 | None |
ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None |
ERR133825 | HR-TB | La1;lineage4.9 | None |
ERR3797047 | MDR-TB | lineage4.9 | None |
SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None |
SRR3675246 | Other | lineage4.9 | None |
ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None |
SRR28119827 | Other | La3;lineage4.9 | None |