Rv0668 - c.3321G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
72 Sensitive
3 RR-TB
30 HR-TB
8 MDR-TB
3 Pre-XDR-TB
1 XDR-TB
58 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 93 |
| lineage2.2.1 | 10 |
| lineage3 | 2 |
| lineage4.8 | 7 |
| lineage4.3.2.1 | 3 |
| lineage2.2.1.2 | 3 |
| lineage4.3.4.1 | 2 |
| La1.7;M.canetti;lineage4.9 | 2 |
| La3;lineage4.9 | 5 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.7 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage4 | 7 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.9;lineage9 | 1 |
| La1.7.1 | 1 |
| lineage4.9;lineage7 | 1 |
| La1.7;lineage4.9 | 4 |
| lineage2.2 | 1 |
| lineage4.1.2.1 | 2 |
| lineage1.1.1;lineage4 | 1 |
| La1.6;lineage4 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage1.2.1.1 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage1.1.2 | 1 |
| La1;lineage4.9 | 3 |
| lineage1.1.3.1 | 1 |
| lineage4.1.2 | 2 |
| lineage4.3.4.2.1 | 2 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage3.1;lineage9 | 1 |
| lineage4.1;lineage4.9 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| 1 | |
| lineage4.4.2 | 1 |
| M.canetti;lineage1 | 1 |
| M.canetti;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 175 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR971389 | Sensitive | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR6866639 | Other | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR9970979 | Sensitive | lineage4.8 | None | ERR473332 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR6045706 | Sensitive | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | ERR926165 | Sensitive | lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | ERR4796254 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR12015084 | Other | lineage4.8 | None | ERR369162 | Other | lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR5535933 | Other | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR6046046 | Other | lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | ERR4798099 | Other | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | SRR6046492 | Other | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046897 | Sensitive | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR363474 | Sensitive | lineage4.9 | None | SRR7496471 | Sensitive | lineage4 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR4819933 | Sensitive | lineage4.9 | None | ERR9786639 | Sensitive | lineage4.8 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR29231479 | RR-TB | lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR20970016 | Other | lineage2.2.1 | None | ERR926164 | Other | lineage4.9 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR29096246 | Sensitive | La1.7;lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR29017081 | Sensitive | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR6359082 | Other | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR5341456 | Other | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR28351339 | MDR-TB | lineage4 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | SRR6046878 | Other | lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR1158918 | Sensitive | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR12015086 | RR-TB | lineage4.8 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR6358979 | Other | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR6046593 | Other | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | ERR2660539 | Other | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR9786444 | Sensitive | lineage4.8 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | ERR9786076 | Sensitive | lineage3 | None | SRR6045371 | Other | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR323037 | Other | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR3675387 | Other | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR5341453 | Other | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR5987421 | MDR-TB | lineage4.3.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR9119828 | MDR-TB | lineage4.3.2.1 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR1063896 | Sensitive | None | ERR502511 | Sensitive | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR3675292 | Sensitive | lineage4.9 | None | ERR4816964 | Sensitive | lineage4.9 | None | ERR13264981 | Sensitive | La1.7;lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | DRR188519 | Other | lineage4.4.2 | None | SRR5341330 | Other | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | SRR29097058 | Other | lineage4.9 | None | ERR12015085 | Other | lineage4.8 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR6359069 | Sensitive | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR11465509 | Sensitive | lineage4.3.4.2.1 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | SRR3675260 | Sensitive | lineage4.9 | None |
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