EBG00000313339 - n.756_766delACCCACACGCG
Drug resistance types
2 Sensitive
4 RR-TB
28 HR-TB
11 MDR-TB
0 Pre-XDR-TB
3 XDR-TB
62 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 3 |
| lineage4.9 | 20 |
| La3;M.canetti;lineage2.1;lineage4.9 | 3 |
| lineage4.9;lineage6.3 | 5 |
| M.canetti;lineage2.2 | 2 |
| lineage4.1;lineage4.8 | 1 |
| La1.7.1 | 1 |
| 7 | |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 6 |
| lineage6.3.1 | 1 |
| lineage2.1;lineage4.9 | 4 |
| M.canetti;lineage2.1;lineage4.9 | 4 |
| lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage4.8 | 5 |
| lineage3 | 1 |
| lineage4.6.2.2 | 3 |
| lineage4.1.3 | 2 |
| lineage2.1;lineage2.2;lineage6.3 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.9 | 4 |
| lineage4.1.1.1 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 3 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| M.canetti;lineage1 | 1 |
| lineage2.2.1 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La3;lineage4.8 | 1 |
| La3;lineage2.2.1 | 1 |
| lineage1.1 | 1 |
| lineage4.1.2.1 | 2 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage2.2.2;lineage4 | 1 |
| lineage2.1 | 1 |
| lineage4.3.3 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| La3;lineage2 | 1 |
| lineage4.6.4 | 2 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage2.2.1;lineage3 | 1 |
| La1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 110 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR28119805 | Other | lineage4.9 | None | SRR28119752 | Other | lineage4.9 | None | ERR124652 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR9786525 | Other | lineage4.1;lineage4.8 | None | SRR7240492 | HR-TB | La1.7.1 | None | ERR9786604 | Other | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR1640750 | Other | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR6358837 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR18289200 | Other | lineage4.9 | None | ERR13285304 | Other | lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR29016780 | Other | lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR8665994 | Other | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR13292526 | Other | lineage4.9 | None | SRR3675486 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675464 | HR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR11081258 | Other | lineage4.8 | None | ERR11049020 | Other | lineage4.8 | None | ERR4800341 | Other | lineage3 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR8976043 | HR-TB | lineage2.1;lineage2.2;lineage6.3 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR3675311 | Other | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR9786843 | Other | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR9787197 | Other | None | SRR6325442 | HR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR3797016 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | SRR3675507 | Other | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR29016901 | Other | La3;lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | ERR12015085 | Other | lineage4.8 | None | SRR6789626 | Other | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR278594 | HR-TB | lineage2.1;lineage4.9 | None | SRR1165699 | Other | lineage4.9 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR12015083 | Other | La3;lineage4.8 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | SRR29050859 | Other | lineage4.9 | None | ERR13285305 | Other | lineage4.9 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR26399265 | Other | lineage2.2.1 | None | ERR3077978 | RR-TB | lineage1.1 | None | ERR1873393 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR25827682 | Other | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | ERR9786671 | Other | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR1167384 | Other | La3;lineage4.9 | None | ERR13292527 | Other | lineage4.9 | None | SRR29051043 | Other | lineage4.3.3 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR12015084 | Other | lineage4.8 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR11252736 | Other | lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | SRR29772570 | Other | lineage4.9 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR4872102 | MDR-TB | lineage4.6.4 | None | SRR3675482 | Other | lineage4.9 | None | ERR9119508 | MDR-TB | lineage4.6.4 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR12015086 | RR-TB | lineage4.8 | None | ERR126608 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR26159043 | Other | lineage4.9 | None | ERR2229143 | RR-TB | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR28119777 | Other | lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR23961549 | Other | La1.2 | None | ERR386953 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None |
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