Rv0668 - c.3261G>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
20 Sensitive
4 RR-TB
24 HR-TB
18 MDR-TB
0 Pre-XDR-TB
2 XDR-TB
26 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.2.1.1 | 1 |
| lineage1.1.2 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.8 | 5 |
| lineage4.9 | 20 |
| La1;lineage2;lineage4.9 | 1 |
| 4 | |
| lineage4.9;lineage9 | 2 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage3 | 4 |
| La1.7;lineage4.9 | 3 |
| lineage4 | 2 |
| lineage4.1.2.1 | 2 |
| lineage2.2.1 | 3 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.6.2.2 | 4 |
| La1.2 | 1 |
| M.canetti;lineage4.9 | 2 |
| lineage4.2;lineage4.9 | 3 |
| M.canetti;lineage2.2 | 2 |
| lineage4.3.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.1.1.3 | 2 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.4.1.2 | 1 |
| lineage6.1.1 | 2 |
| lineage3.1.2.2 | 1 |
| lineage4.6.1 | 1 |
| lineage4.1 | 1 |
| lineage5.2 | 2 |
| lineage4.9;lineage6.3 | 2 |
| lineage4.3.4.2.1 | 3 |
| La1;lineage4.9 | 1 |
| lineage3.1.2.1 | 1 |
| lineage1.1.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.7 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La2;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 94 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4814734 | Other | lineage1.2.1.1 | None | SRR21733183 | RR-TB | lineage1.1.2 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR12015085 | Other | lineage4.8 | None | SRR29050770 | Sensitive | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR6358991 | HR-TB | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4797588 | MDR-TB | lineage3 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | SRR7496471 | Sensitive | lineage4 | None | ERR9786639 | Sensitive | lineage4.8 | None | ERR9786076 | Sensitive | lineage3 | None | ERR9786525 | Other | lineage4 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR29097066 | Sensitive | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR29096246 | Sensitive | La1.7;lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR176740 | Other | lineage4.9 | None | SRR23961549 | Other | La1.2 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | ERR11082350 | MDR-TB | lineage4.6.2.2 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR6866410 | Sensitive | lineage4.9 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR13278785 | MDR-TB | lineage4.6.2.2 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4798504 | RR-TB | lineage3 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9786526 | Other | lineage4.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR990545 | Other | lineage3 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR11465509 | Sensitive | lineage4.3.4.2.1 | None | SRR23961542 | Other | La1;lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR7535086 | Other | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR29096150 | Other | lineage4.9 | None | ERR176751 | Other | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR29097026 | Other | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | SRR29097037 | Other | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | ERR9786843 | Other | None | ERR987722 | MDR-TB | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR7496523 | Other | lineage4.7 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR12015084 | Other | lineage4.8 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR11252736 | Other | lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR12015086 | RR-TB | lineage4.8 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None |
|---|
