Rv0006 - c.409T>C


Drug resistance types
42 Sensitive 14 RR-TB 102 HR-TB 44 MDR-TB 2 Pre-XDR-TB 0 XDR-TB 71 Other
lineage Counts
lineage Count
lineage4.1.2.1.1 1
M.canetti;lineage2.1;lineage4.9 24
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 4
lineage4.9 93
La1;lineage4.9 2
La1.7.1;La1.7.X-unk4;lineage7 1
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
lineage1.1.2 1
La1;lineage4.1.2 1
lineage3.1 1
La3;lineage4.9 9
La3;M.canetti;lineage2.1;lineage4.9 12
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 2
lineage4.1.2.1 7
lineage4.8;lineage4.9 2
M.canetti;lineage2.1;lineage3 1
La1.7;lineage4.9 6
lineage3 2
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
M.canetti;lineage2.1;lineage4.9;lineage6.3 6
lineage4.3.4.2.1 1
lineage2.2.1 6
lineage2.1;lineage4.9;lineage6.3 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
3
La3;M.canetti;lineage2.1;lineage3.1 1
lineage2.1;lineage4.3.2 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La1.7.1 2
lineage4.3.1;lineage4.9;lineage6 1
lineage4.6.3;lineage4.9 1
lineage1.1.2;lineage4 1
La3;lineage4.3.4 1
lineage4.3.2.1 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 2
lineage4.2.1 1
lineage4.9;lineage7 1
lineage2.1;lineage2.2;lineage6.3 1
lineage6.1.2 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
lineage1.1 1
La1.2.BCG 1
La3;M.canetti;lineage3.1 1
M.canetti;lineage2.1 1
M.canetti;lineage4.9 3
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
lineage4.4.1.1 1
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
La3;M.canetti;lineage4.8;lineage4.9 1
lineage4.9;lineage6.1.3 1
La1.8.1 4
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
lineage2.1;lineage4.9 6
La2;lineage2.2 1
lineage4.1.2 1
La1.6;La3;lineage4.6.4;lineage4.9 1
La2;lineage4.9 1
M.canetti;lineage2.2 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La1.7.1;La1.7.X-unk4 1
M.canetti;lineage1 1
lineage2.1;lineage4.1.1.1;lineage6.3 2
lineage4.9;lineage9 1
M.canetti;lineage2.1;lineage4.1.2.1 1
La1.7.1;lineage4.9 1
lineage1.1.3.1 1
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
lineage1.1.3.2 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
La1.7;M.canetti;lineage4.9 1
lineage2.2.1.2;lineage7 1
La3;M.canetti;lineage4.9 1
lineage4.5 2
lineage2.2 1
M.canetti;lineage4.9;lineage9 1
La3;lineage4 1
M.canetti;lineage2.1;lineage4 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La1.2 1
lineage4.1.1.3 1
lineage1;lineage4.9 1
lineage4.1.1.2 1
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La1;lineage2;lineage4.9 1
M.canetti;lineage4.3.1;lineage4.9 1
lineage4.3.4.2 1
lineage4 1
lineage4.9;lineage6.3 1
lineage2.1;lineage4.9;lineage6.3;lineage8 1
M.canetti;lineage2.1;lineage6.3 1
spoligotype Counts
spoligotype Count
None 275
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR760733 MDR-TB lineage4.1.2.1.1 None
ERR4188350 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR6866639 Other lineage4.9 None
ERR133825 HR-TB La1;lineage4.9 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6046594 Sensitive lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
ERR3797047 MDR-TB lineage4.9 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
SRR3675450 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR4797193 HR-TB lineage1.1.2 None
ERR473332 Other lineage4.9 None
SRR9970978 Sensitive La1;lineage4.1.2 None
SRR28351442 HR-TB lineage3.1 None
SRR6044835 Other lineage4.9 None
ERR779852 Sensitive lineage4.9 None
ERR5311094 HR-TB lineage4.9 None
ERR3283057 Sensitive La3;lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4796929 Sensitive lineage4.9 None
ERR4818110 Sensitive lineage4.9 None
ERR323038 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3797014 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR7131023 Other lineage4.1.2.1 None
ERR4024991 Other lineage4.8;lineage4.9 None
ERR4814536 MDR-TB M.canetti;lineage2.1;lineage3 None
ERR176560 HR-TB La1.7;lineage4.9 None
SRR28044873 Pre-XDR-TB lineage3 None
ERR473314 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR126600 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR176778 HR-TB lineage4.9 None
ERR3797087 Sensitive lineage4.9 None
SRR19295647 Sensitive lineage4.9 None
SRR28119827 Other La3;lineage4.9 None
ERR323047 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR6866022 Other lineage4.8;lineage4.9 None
ERR323060 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR5311098 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR3806850 HR-TB lineage4.1.2.1 None
ERR323044 HR-TB lineage4.3.4.2.1 None
ERR9786911 HR-TB lineage4.1.2.1 None
ERR176651 Other lineage4.9 None
ERR176658 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR137286 Other lineage4.9 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR10808668 Sensitive lineage2.2.1 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3468607 Other lineage4.9 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323063 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR2026698 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR1063896 Sensitive None
ERR5311083 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
ERR772255 MDR-TB lineage2.1;lineage4.3.2 None
ERR9119669 HR-TB lineage4.9 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR6358979 Other lineage4.9 None
SRR1792478 HR-TB La1.7.1 None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
ERR702405 Sensitive lineage4.9 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR14801759 HR-TB La1.7;lineage4.9 None
ERR323115 Sensitive lineage4.9 None
SRR3675486 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR181887 Other lineage4.9 None
SRR10809074 Sensitive lineage4.9 None
ERR2446566 Other lineage4.9 None
ERR3283014 Sensitive La3;lineage4.9 None
ERR4769521 RR-TB lineage4.9 None
ERR1063883 HR-TB lineage4.9 None
ERR4821655 HR-TB lineage4.9 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4817692 HR-TB lineage1.1.2;lineage4 None
SRR6045219 HR-TB lineage4.9 None
ERR3797063 Sensitive La3;lineage4.9 None
ERR124636 Sensitive lineage4.9 None
ERR161039 HR-TB La3;lineage4.3.4 None
ERR216938 HR-TB La1.7;lineage4.9 None
ERR3283011 Other La3;lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR5709967 MDR-TB lineage2.2.1 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR2229143 RR-TB lineage4.9 None
ERR3283032 Other lineage4.9 None
ERR5311089 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR13285191 Sensitive lineage4.9 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR14802079 MDR-TB lineage4.2.1 None
ERR4816466 HR-TB lineage4.9 None
SRR3675246 Other lineage4.9 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR176751 Other lineage4.9 None
ERR4831117 HR-TB lineage4.9;lineage7 None
ERR3797046 HR-TB lineage4.9 None
ERR1034634 HR-TB lineage4.9 None
SRR6045706 Sensitive lineage4.9 None
SRR13861332 Other lineage4.9 None
ERR212125 HR-TB lineage4.9 None
ERR8976043 HR-TB lineage2.1;lineage2.2;lineage6.3 None
ERR9787030 RR-TB lineage6.1.2 None
SRR6045892 Sensitive lineage4.9 None
SRR26331611 Sensitive lineage4.9 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
ERR3077978 RR-TB lineage1.1 None
ERR1873393 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4798262 HR-TB La1.2.BCG None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
ERR323041 HR-TB M.canetti;lineage2.1 None
SRR6045233 Other M.canetti;lineage4.9 None
SRR5341456 Other lineage4.9 None
SRR3675554 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6044815 Other lineage4.9 None
ERR3283055 HR-TB lineage4.9 None
ERR4797474 Sensitive lineage4.9 None
SRR7240492 HR-TB La1.7.1 None
SRR1173453 Other lineage4.4.1.1 None
SRR13861266 Sensitive lineage4.9 None
SRR13861322 Other lineage4.9 None
SRR3675558 HR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
SRR1640750 Other None
SRR3675568 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR3675444 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR13285192 Sensitive lineage4.9 None
ERR3275196 Other lineage2.2.1 nl
SRR6045503 Sensitive lineage4.9 None
SRR3675232 Other lineage4.1.2.1 None
ERR1063858 HR-TB lineage4.9 None
ERR038268 HR-TB La3;M.canetti;lineage4.8;lineage4.9 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
ERR3797023 HR-TB La1.8.1 None
SRR3675322 HR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR26399239 Sensitive lineage4.9 None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
SRR3675507 Other lineage4.9 None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR12142339 HR-TB lineage2.2.1 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
ERR1063839 MDR-TB La2;lineage2.2 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR9786384 Sensitive lineage4.1.2.1 None
ERR3797083 RR-TB lineage4.9 None
SRR9970980 HR-TB lineage4.1.2 None
SRR1791747 Other La1.8.1 None
ERR323036 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR323108 HR-TB La1.7;lineage4.9 None
ERR2026697 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR1163221 MDR-TB lineage4.1.2.1 None
ERR2693228 RR-TB lineage4.9 None
ERR2693231 Other La1.6;La3;lineage4.6.4;lineage4.9 None
SRR1167055 Other lineage4.1.2.1 None
ERR4798099 Other lineage4.9 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
ERR3283030 HR-TB lineage4.9 None
ERR3797015 HR-TB lineage4.9 None
SRR6046133 HR-TB lineage4.9 None
SRR5341330 Other lineage4.9 None
SRR3675235 Sensitive lineage4.9 None
ERR400345 Other lineage4.9 None
SRR29096879 Sensitive lineage4.9 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR11662694 Other lineage4.9 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
ERR161037 Other lineage4.9 None
ERR3283016 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3283047 Sensitive La3;lineage4.9 None
SRR15014655 Other M.canetti;lineage1 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
SRR6046720 HR-TB lineage4.9;lineage9 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6511621 Sensitive lineage4.9 None
SRR6458421 MDR-TB lineage2.2.1 None
ERR1063862 HR-TB lineage4.9 None
SRR6045371 Other lineage4.9 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
ERR3283021 HR-TB lineage4.9 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
ERR108471 HR-TB lineage4.9 None
ERR3797064 Other La3;lineage4.9 None
ERR8479578 Sensitive lineage1.1.3.1 None
ERR176766 HR-TB lineage2.1;lineage4.9 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
SRR28868888 Other lineage1.1.3.2 None
ERR5311096 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
SRR13861305 Other lineage4.9 None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675585 Sensitive lineage4.9 None
ERR386953 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
ERR4797264 Sensitive lineage4.9 None
ERR13265833 Other lineage4.9 None
SRR6325448 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR6325442 HR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR181824 HR-TB lineage4.9 None
ERR212034 HR-TB La1.7;lineage4.9 None
SRR3675487 Other M.canetti;lineage4.9 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
SRR6045555 Other lineage4.9 None
SRR3675243 Other lineage4.9 None
SRR3675545 Other La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR6866807 Other lineage4.9 None
ERR3797016 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR7236177 Other La1.8.1 None
SRR6045952 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR181744 HR-TB La3;lineage4.9 None
SRR18549032 HR-TB lineage2.2.1.2;lineage7 None
ERR3283040 HR-TB lineage4.9 None
ERR2693229 RR-TB La3;M.canetti;lineage4.9 None
ERR4811030 Sensitive lineage4.9 None
SRR6046611 Sensitive lineage4.9 None
ERR736872 HR-TB lineage4.9 None
ERR4811031 Sensitive lineage4.5 None
ERR4810624 MDR-TB lineage2.2 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
ERR2693242 RR-TB lineage2.1;lineage4.9 None
ERR3283028 Other La3;lineage4 None
ERR2693239 RR-TB M.canetti;lineage2.1;lineage4 None
SRR3675506 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR8665994 Other lineage4.9 None
SRR5535933 Other lineage4.9 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
ERR5162090 RR-TB lineage4.9 None
ERR4821053 RR-TB lineage3 None
ERR5311100 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797048 Other La3;lineage4.9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR6866410 Sensitive lineage4.9 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR4769427 Other La1.2 None
SRR6325445 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR323107 Sensitive lineage4.9 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
ERR4831616 MDR-TB lineage2.2.1 None
ERR4816551 HR-TB lineage4.1.1.3 None
ERR323045 HR-TB lineage1;lineage4.9 None
SRR16156817 Other lineage4.9 None
ERR3468544 Other lineage2.1;lineage4.9 None
SRR8692887 Other None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4818252 Sensitive lineage4.1.1.2 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR067699 Sensitive La1;lineage2;lineage4.9 None
ERR9119138 RR-TB M.canetti;lineage4.3.1;lineage4.9 None
ERR400326 Other lineage4.9 None
SRR10808805 Other La1;lineage4.9 None
SRR1791696 Other La1.8.1 None
SRR6044942 HR-TB lineage4.9 None
ERR9634265 Sensitive lineage4.3.4.2 None
ERR3273109 HR-TB lineage4 None
SRR3675561 Other M.canetti;lineage2.1;lineage4.9 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
ERR751326 Other lineage4.9 None
ERR278594 HR-TB lineage2.1;lineage4.9 None
ERR176779 HR-TB lineage4.9 None
SRR3675515 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675464 HR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR6045290 RR-TB M.canetti;lineage2.1;lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR26159035 Sensitive lineage4.9 None
SRR13423544 Other lineage4.5 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None