Rv0006 - c.409T>C


Drug resistance types
50 Sensitive 11 RR-TB 102 HR-TB 42 MDR-TB 2 Pre-XDR-TB 0 XDR-TB 73 Other
lineage Counts
lineage Count
M.canetti;lineage2.1;lineage4.9;lineage6.3 6
lineage4.9 99
lineage4.3.4.2 1
M.canetti;lineage2.1;lineage4.9 24
lineage4.9;lineage6.3 1
La1.7;lineage4.9 6
M.canetti;lineage2.1;lineage4.1.2.1 1
La1.7.1 2
M.canetti;lineage2.1;lineage6.3 1
lineage2.2.1.2 1
lineage1.1.2;lineage4 1
La1;lineage4.9 2
lineage2.1;lineage4.9 6
La3;lineage4.9 9
lineage4.1.2 2
lineage4.8 1
lineage4.3.2.1 1
La3;M.canetti;lineage2.1;lineage4.9 12
lineage4.9;lineage7 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
M.canetti;lineage2.1 1
M.canetti;lineage4.9 3
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 2
lineage4.1.2.1 7
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 4
lineage3 2
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
La1.7;M.canetti;lineage4.9 1
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
La3;M.canetti;lineage4.8;lineage4.9 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 2
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
La3;M.canetti;lineage2.1;lineage3.1 1
La1.8.1 4
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La1.6;La3;lineage4.6.4;lineage4.9 1
M.canetti;lineage2.2 1
lineage1;lineage4.9 1
La1.2 1
3
lineage4.3.4 1
lineage4.1.1.3 1
La1;lineage2;lineage4.9 1
lineage6 1
lineage4.9;lineage9 1
lineage4 1
lineage2.2.1 6
lineage4.2.1 1
lineage2.1;lineage4.9;lineage6.3;lineage8 1
lineage4.1.1;lineage4.9 1
lineage1.1.3.1 1
lineage4.1.1.1 1
La1.7.1;La1.7.X-unk4;lineage7 1
lineage3.1 1
La3;M.canetti;lineage3.1 1
lineage4.8;lineage4.9 2
M.canetti;lineage2.1;lineage3 1
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
lineage4.4.1.1 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
lineage4.5 2
La3;lineage4 1
M.canetti;lineage2.1;lineage4 1
La2;lineage2.2 1
lineage4.3.1;lineage4.9;lineage6 1
lineage4.6.3;lineage4.9 1
lineage1.1 1
lineage4.1.1.2 1
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La1.7.1;La1.7.X-unk4 1
lineage4.1.2.1.1 1
lineage1.1.2 1
M.canetti;lineage1 1
La1.7.1;lineage4.9 1
lineage2.2 1
lineage1.1.3.2 1
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
lineage4.9;lineage6.1.3 1
lineage2.1;lineage4.9;lineage6.3 1
La3;M.canetti;lineage4.9 1
M.canetti;lineage4.9;lineage9 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La2;lineage4.9 1
lineage4.3.4.2.1 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage4.3.2 1
M.canetti;lineage4.3.1;lineage4.9 1
spoligotype Counts
spoligotype Count
None 280
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6511621 Sensitive lineage4.9 None
SRR6044942 HR-TB lineage4.9 None
ERR1063862 HR-TB lineage4.9 None
ERR9634265 Sensitive lineage4.3.4.2 None
SRR3675561 Other M.canetti;lineage2.1;lineage4.9 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
SRR13861305 Other lineage4.9 None
SRR3675515 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3283032 Other lineage4.9 None
SRR13861332 Other lineage4.9 None
SRR1792478 HR-TB La1.7.1 None
ERR108471 HR-TB lineage4.9 None
ERR4816466 HR-TB lineage4.9 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
SRR18549032 HR-TB lineage2.2.1.2 None
ERR4817692 HR-TB lineage1.1.2;lineage4 None
ERR133825 HR-TB La1;lineage4.9 None
SRR6046594 Sensitive lineage4.9 None
ERR176766 HR-TB lineage2.1;lineage4.9 None
ERR3797047 MDR-TB lineage4.9 None
SRR28119827 Other La3;lineage4.9 None
SRR9970978 Sensitive lineage4.1.2 None
SRR9970979 Sensitive lineage4.8 None
ERR473332 Other lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR176751 Other lineage4.9 None
ERR4831117 HR-TB lineage4.9;lineage7 None
SRR9970980 Other lineage4.1.2 None
ERR1034634 HR-TB lineage4.9 None
SRR26331611 Sensitive lineage4.9 None
ERR5311096 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
ERR323085 Sensitive lineage4.9 None
ERR779852 Sensitive lineage4.9 None
ERR5311094 HR-TB lineage4.9 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
SRR3675585 Sensitive lineage4.9 None
ERR1873393 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4796929 Sensitive lineage4.9 None
ERR323041 HR-TB M.canetti;lineage2.1 None
ERR323038 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6045233 Other M.canetti;lineage4.9 None
ERR3797014 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR7131023 Other lineage4.1.2.1 None
ERR386953 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR5341456 Other lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
ERR4797264 Sensitive lineage4.9 None
ERR176560 HR-TB La1.7;lineage4.9 None
SRR6325448 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR3675554 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR28044873 Pre-XDR-TB lineage3 None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR126600 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6044815 Other lineage4.9 None
ERR176778 HR-TB lineage4.9 None
ERR212034 HR-TB La1.7;lineage4.9 None
ERR3283055 HR-TB lineage4.9 None
SRR19295647 Sensitive lineage4.9 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
SRR6045555 Other lineage4.9 None
SRR13861322 Other lineage4.9 None
SRR3675558 HR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
SRR3675545 Other La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR323060 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR3797016 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675232 Other lineage4.1.2.1 None
ERR1063858 HR-TB lineage4.9 None
ERR038268 HR-TB La3;M.canetti;lineage4.8;lineage4.9 None
SRR6045952 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675322 HR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
ERR137286 Other lineage4.9 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323063 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR3675507 Other lineage4.9 None
ERR2026698 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
ERR8665994 Other lineage4.9 None
ERR9119669 HR-TB lineage4.9 None
ERR3797083 RR-TB lineage4.9 None
ERR6358979 Other lineage4.9 None
SRR1791747 Other La1.8.1 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797048 Other La3;lineage4.9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR6866410 Sensitive lineage4.9 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR2026697 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR1163221 MDR-TB lineage4.1.2.1 None
ERR2693228 RR-TB lineage4.9 None
ERR2693231 Other La1.6;La3;lineage4.6.4;lineage4.9 None
SRR1167055 Other lineage4.1.2.1 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
ERR3283030 HR-TB lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
ERR1063883 HR-TB lineage4.9 None
ERR4821655 HR-TB lineage4.9 None
ERR4769427 Other La1.2 None
SRR8692887 Other None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR161039 Sensitive lineage4.3.4 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4816551 HR-TB lineage4.1.1.3 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR29096394 Sensitive lineage4.9 None
ERR067699 Sensitive La1;lineage2;lineage4.9 None
ERR3283047 Sensitive La3;lineage4.9 None
ERR3283011 Other La3;lineage4.9 None
ERR9787030 Sensitive lineage6 None
SRR6046720 HR-TB lineage4.9;lineage9 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
ERR3273109 HR-TB lineage4 None
ERR751326 Other lineage4.9 None
ERR278594 HR-TB lineage2.1;lineage4.9 None
SRR12142339 HR-TB lineage2.2.1 None
ERR2229143 RR-TB lineage4.9 None
ERR176779 HR-TB lineage4.9 None
SRR14802079 MDR-TB lineage4.2.1 None
SRR3675464 HR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR29096659 Sensitive lineage4.9 None
ERR9786384 Sensitive lineage4.1.2.1 None
ERR13285191 Sensitive lineage4.9 None
SRR26159035 Sensitive lineage4.9 None
ERR4799378 Sensitive lineage4.9 None
SRR1791696 Other La1.8.1 None
SRR13861266 Sensitive lineage4.9 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6325442 HR-TB lineage4.1.1;lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
ERR8479578 Sensitive lineage1.1.3.1 None
SRR6325447 HR-TB lineage4.1.1.1 None
SRR7240492 HR-TB La1.7.1 None
SRR3675246 Other lineage4.9 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
SRR6458421 MDR-TB lineage2.2.1 None
ERR3797046 HR-TB lineage4.9 None
SRR28351442 HR-TB lineage3.1 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6044835 Other lineage4.9 None
ERR212125 HR-TB lineage4.9 None
SRR6045892 Sensitive lineage4.9 None
ERR4818110 Sensitive lineage4.9 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
ERR4024991 Other lineage4.8;lineage4.9 None
ERR4814536 MDR-TB M.canetti;lineage2.1;lineage3 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
ERR473314 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1173453 Other lineage4.4.1.1 None
ERR3806850 HR-TB lineage4.1.2.1 None
SRR7236177 Other La1.8.1 None
ERR181744 HR-TB La3;lineage4.9 None
SRR26399239 Sensitive lineage4.9 None
ERR3468607 Other lineage4.9 None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
ERR4811030 Sensitive lineage4.9 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4811031 Sensitive lineage4.5 None
ERR3283028 Other La3;lineage4 None
ERR2693239 RR-TB M.canetti;lineage2.1;lineage4 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
SRR3675506 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR1063839 MDR-TB La2;lineage2.2 None
ERR5162090 RR-TB lineage4.9 None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR14801759 HR-TB La1.7;lineage4.9 None
ERR4831616 MDR-TB lineage2.2.1 None
ERR181887 Other lineage4.9 None
SRR10809074 Sensitive lineage4.9 None
SRR29096897 Sensitive lineage4.9 None
ERR2446566 Other lineage4.9 None
ERR3283014 Sensitive La3;lineage4.9 None
ERR3077978 Other lineage1.1 None
SRR6046133 HR-TB lineage4.9 None
SRR5341330 Other lineage4.9 None
SRR16156817 Other lineage4.9 None
SRR6045219 HR-TB lineage4.9 None
ERR4821053 Other lineage3 None
ERR4818252 Sensitive lineage4.1.1.2 None
ERR4810624 HR-TB lineage2.2.1 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR124636 Sensitive lineage4.9 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
ERR161037 Other lineage4.9 None
ERR760733 MDR-TB lineage4.1.2.1.1 None
ERR3283016 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4797193 HR-TB lineage1.1.2 None
SRR15014655 Other M.canetti;lineage1 None
ERR400326 Other lineage4.9 None
SRR10808805 Other La1;lineage4.9 None
SRR6045371 Other lineage4.9 None
ERR3283021 HR-TB lineage4.9 None
SRR13423544 Other lineage4.5 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
ERR8976043 HR-TB lineage2.2 None
ERR5311089 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6045290 RR-TB M.canetti;lineage2.1;lineage4.9 None
ERR212138 HR-TB lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4188350 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797064 Other La3;lineage4.9 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR28868888 Other lineage1.1.3.2 None
ERR6866639 Other lineage4.9 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
SRR5709967 MDR-TB lineage2.2.1 None
SRR3675450 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR6045706 Sensitive lineage4.9 None
ERR3283057 Sensitive La3;lineage4.9 None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR181824 HR-TB lineage4.9 None
ERR3797087 Sensitive lineage4.9 None
SRR3675487 Other M.canetti;lineage4.9 None
ERR323047 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4797474 Sensitive lineage4.9 None
ERR6866022 Other lineage4.8;lineage4.9 None
SRR3675243 Other lineage4.9 None
SRR1640750 Other None
SRR3675568 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR3675444 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR13285192 Sensitive lineage4.9 None
SRR6045503 Sensitive lineage4.9 None
ERR5311098 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR6866807 Other lineage4.9 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
ERR9786911 HR-TB lineage4.1.2.1 None
ERR176651 Other lineage4.9 None
ERR176658 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3283040 HR-TB lineage4.9 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
ERR2693229 RR-TB La3;M.canetti;lineage4.9 None
SRR6046611 Sensitive lineage4.9 None
ERR736872 HR-TB lineage4.9 None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
ERR2693242 RR-TB lineage2.1;lineage4.9 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR1063896 Sensitive None
ERR5311083 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR5535933 Other lineage4.9 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR5311100 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323036 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR323108 HR-TB La1.7;lineage4.9 None
ERR702405 Sensitive lineage4.9 None
SRR6325445 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR323107 Sensitive lineage4.9 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR323115 Sensitive lineage4.9 None
ERR4798099 Other lineage4.9 None
ERR1063857 MDR-TB La2;lineage4.9 None
SRR3675486 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR3797015 HR-TB lineage4.9 None
ERR4769521 RR-TB lineage4.9 None
SRR3675235 Sensitive lineage4.9 None
ERR400345 Other lineage4.9 None
ERR3468544 Other lineage2.1;lineage4.9 None
ERR323044 HR-TB lineage4.3.4.2.1 None
SRR29096879 Sensitive lineage4.9 None
ERR3797023 HR-TB La1.8.1 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR11662694 Other lineage4.9 None
ERR3797063 Sensitive La3;lineage4.9 None
ERR13265833 Other lineage4.9 None
ERR216938 HR-TB La1.7;lineage4.9 None
ERR772255 MDR-TB lineage4.3.2 None
ERR9119138 RR-TB M.canetti;lineage4.3.1;lineage4.9 None
SRR10808668 Sensitive lineage2.2.1 None