Rv0006 - c.1212C>G
Drug resistance types
33 Sensitive
14 RR-TB
58 HR-TB
38 MDR-TB
6 Pre-XDR-TB
2 XDR-TB
38 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage4.3.4.2.1 | 1 |
| lineage4.9 | 53 |
| lineage2.2.1 | 45 |
| lineage4.1.1.3 | 2 |
| lineage4.1.2 | 1 |
| lineage4.3.3 | 1 |
| lineage4.3.2.1 | 2 |
| lineage6.1.3 | 1 |
| La1.8.1 | 2 |
| M.canetti;lineage4.9 | 3 |
| La1.7;lineage4.9 | 4 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage2.2 | 2 |
| La1.7.1;lineage4.9 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage4.6.4;lineage4.9 | 1 |
| lineage4.8 | 8 |
| La1;lineage4.1.2 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| M.canetti;lineage4.9;lineage9 | 1 |
| 2 | |
| lineage1.1.2 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La2;lineage2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.9;lineage7 | 2 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 3 |
| lineage1;lineage4.9 | 1 |
| La1;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage1.2.1.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| M.canetti;lineage4.2 | 1 |
| lineage1.1.3.1 | 1 |
| La3;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La2;lineage4.9 | 1 |
| M.canetti;lineage4.6.4;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 2 |
| M.canetti;lineage1 | 1 |
| lineage4 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.9;lineage9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| M.canetti;lineage2.2 | 2 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| La1.2.BCG | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage3.1.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 189 |
Geographic prevalence
Country level data for this variant is available for 4 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | SRR6045010 | Sensitive | lineage4.9 | None | DRR188480 | Sensitive | lineage2.2.1 | None | ERR4798099 | HR-TB | lineage4.9 | None | ERR2693252 | HR-TB | lineage4.9 | None | ERR702405 | HR-TB | lineage4.9 | None | DRR130063 | Pre-XDR-TB | lineage2.2.1 | None | ERR550637 | MDR-TB | lineage4.1.1.3 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR14164592 | Sensitive | lineage2.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR6832787 | Other | lineage2.2.1 | None | DRR041785 | Sensitive | lineage2.2.1 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR9787256 | Other | lineage6.1.3 | None | DRR189089 | Sensitive | lineage2.2.1 | None | SRR5341384 | HR-TB | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | DRR189031 | HR-TB | lineage2.2.1 | None | SRR7236177 | Other | La1.8.1 | None | ERR124636 | HR-TB | lineage4.9 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR6511621 | HR-TB | lineage4.9 | None | ERR1035122 | HR-TB | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | DRR474131 | Sensitive | lineage2.2.1 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR5341432 | Other | La1.7;lineage4.9;lineage7 | None | ERR4188322 | Other | lineage4.6.4;lineage4.9 | None | SRR10809074 | HR-TB | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR4832042 | HR-TB | lineage4.8 | vn | ERR3797047 | MDR-TB | lineage4.9 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | DRR041786 | Sensitive | lineage2.2.1 | None | DRR130182 | MDR-TB | lineage2.2.1 | None | DRR130213 | Pre-XDR-TB | lineage2.2.1 | None | SRR5065492 | HR-TB | lineage4.8 | vn | SRR18910156 | RR-TB | lineage2.2.1 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | ERR736834 | HR-TB | lineage4.9 | None | ERR6866022 | HR-TB | lineage4.8;lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR2026697 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR16103896 | RR-TB | lineage2.2.1 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | DRR188489 | Sensitive | lineage2.2.1 | None | SRR28339294 | MDR-TB | lineage2.2.1 | None | ERR212001 | HR-TB | None | ERR6866807 | RR-TB | lineage4.9 | None | SRR21733183 | RR-TB | lineage1.1.2 | None | ERR4797474 | Other | lineage4.9 | None | ERR4810624 | MDR-TB | lineage2.2 | None | DRR474005 | HR-TB | lineage2.2.1 | None | SRR3675555 | MDR-TB | lineage2.1;lineage4.9;lineage7 | None | DRR041784 | Sensitive | lineage2.2.1 | None | DRR034367 | Sensitive | lineage2.2.1 | None | DRR041783 | Sensitive | lineage2.2.1 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR6866639 | HR-TB | lineage4.9 | None | DRR041787 | Sensitive | lineage2.2.1 | None | SRR3675390 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | DRR188956 | Sensitive | lineage2.2.1 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | SRR6045548 | Other | lineage4.9 | None | ERR4822363 | Pre-XDR-TB | lineage2.2.1 | None | ERR2026698 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR5341313 | Other | La1.7;lineage4.9;lineage7 | None | ERR4831946 | HR-TB | lineage4.8 | vn | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR27450253 | Sensitive | lineage4.8 | None | ERR4769521 | RR-TB | lineage4.9 | None | DRR188680 | Sensitive | lineage2.2.1 | None | DRR041788 | Sensitive | lineage2.2.1 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | DRR130189 | Pre-XDR-TB | lineage2.2.1 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | DRR189067 | MDR-TB | lineage2.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR27450220 | Sensitive | lineage4.8 | None | ERR1035162 | MDR-TB | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR3675235 | HR-TB | lineage4.9 | None | SRR16057932 | Sensitive | lineage2.2.1 | None | SRR12006550 | Other | lineage1.2.1.2 | None | ERR5311079 | MDR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | DRR130157 | Sensitive | lineage2.2.1 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR9125836 | Sensitive | lineage2.2.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | DRR034450 | Sensitive | lineage2.2.1 | None | DRR188974 | Sensitive | lineage2.2.1 | None | DRR034470 | Sensitive | lineage2.2.1 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | ERR3283021 | MDR-TB | lineage4.9 | None | ERR2199988 | MDR-TB | lineage4.1.1.3 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | SRR28339304 | Pre-XDR-TB | lineage2.2.1 | None | ERR1063896 | HR-TB | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | SRR3675449 | RR-TB | M.canetti;lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | SRR26937005 | MDR-TB | lineage4.8 | None | ERR4830185 | Other | lineage4.8 | vn | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR1791747 | Other | La1.8.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | DRR473935 | Sensitive | lineage2.2.1 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR5341300 | HR-TB | lineage4.9 | None | SRR3675446 | RR-TB | lineage4.9 | None | ERR9119669 | MDR-TB | lineage4.9 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | DRR474061 | Other | lineage2.2.1 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR3675586 | RR-TB | M.canetti;lineage4.6.4;lineage4.9 | None | SRR3675495 | RR-TB | lineage2.1;lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR5217423 | HR-TB | lineage2.2.1 | None | DRR188543 | Sensitive | lineage2.2.1 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR323062 | HR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR3675585 | HR-TB | lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR14801759 | MDR-TB | La1.7;lineage4.9 | None | ERR4796254 | Other | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | SRR5341418 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | SRR21576684 | MDR-TB | lineage2.2.1 | None | ERR5311097 | Other | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR4797184 | HR-TB | lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR502889 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | DRR473772 | Sensitive | lineage2.2.1 | None | ERR212125 | HR-TB | lineage4.9 | None | DRR473950 | HR-TB | lineage2.2.1 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | DRR041789 | Sensitive | lineage2.2.1 | None | ERR161037 | HR-TB | lineage4.9 | None | ERR502511 | HR-TB | lineage4.9 | None | ERR133986 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR28339293 | MDR-TB | lineage2.2.1 | None | SRR28339303 | Pre-XDR-TB | lineage2.2.1 | None | ERR137286 | Other | lineage4.9 | None | DRR474098 | Sensitive | lineage2.2.1 | None | SRR5341373 | Other | lineage4.9 | None | SRR3675441 | RR-TB | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR4797264 | HR-TB | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | DRR474157 | Sensitive | lineage2.2.1 | None | ERR9119239 | Other | lineage4.8 | None | ERR4024991 | HR-TB | lineage4.8;lineage4.9 | None |
|---|
