EBG00000313339 - n.528G>A
Drug resistance types
63 Sensitive
21 RR-TB
67 HR-TB
27 MDR-TB
21 Pre-XDR-TB
0 XDR-TB
139 Other
lineage Counts
| lineage | Count |
|---|---|
| 50 | |
| lineage4.1.2.1 | 11 |
| lineage4.1.1.3 | 3 |
| lineage3.1.1 | 3 |
| lineage4.9 | 28 |
| lineage5 | 1 |
| lineage4.8 | 16 |
| lineage1.1.3.1 | 2 |
| lineage4 | 72 |
| lineage3.1.3 | 4 |
| lineage2.2.1 | 44 |
| lineage4.2.2.2 | 3 |
| lineage4.4 | 1 |
| lineage4.1.1.3.1 | 2 |
| lineage4.6.2.2 | 2 |
| lineage3 | 11 |
| lineage3.1.2 | 2 |
| lineage4.1.2 | 6 |
| lineage4.7 | 2 |
| lineage5.2 | 2 |
| lineage3.1.2.2 | 1 |
| lineage1.2.2.2 | 3 |
| lineage4.6.5 | 1 |
| lineage4.4.1.1 | 2 |
| lineage4.6.2 | 1 |
| lineage2.2.1.1 | 3 |
| lineage4.6 | 1 |
| lineage2.1 | 3 |
| lineage4.3.3 | 6 |
| lineage4.3.4.1 | 3 |
| lineage5.1.1 | 1 |
| La1.8.1 | 5 |
| lineage4.3.2.1 | 2 |
| lineage4.4.2 | 2 |
| lineage4.4.1.2 | 2 |
| lineage4.9.1 | 1 |
| lineage4.3.4.2 | 2 |
| lineage2.2 | 2 |
| lineage4.9;lineage4.3.4 | 1 |
| lineage4.9;lineage1.1 | 1 |
| lineage4.1.1 | 1 |
| lineage4.3.4 | 2 |
| lineage1.1.2 | 4 |
| lineage4;lineage3.1 | 1 |
| lineage1.1.1 | 1 |
| lineage4.3.1.1 | 1 |
| lineage6.1.3 | 1 |
| lineage6 | 1 |
| lineage4.2.1 | 1 |
| La1.7.1 | 1 |
| lineage2.2.2 | 4 |
| lineage4.2.2 | 2 |
| lineage4;lineage2.2 | 1 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage4.1.3 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage1.2.1.1 | 1 |
| lineage1 | 1 |
| lineage3.1 | 1 |
| lineage4.5 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 338 |
Geographic prevalence
Country level data for this variant is available for 10 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6046087 | Other | None | SRR6046089 | Other | lineage4.1.2.1 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR6045553 | RR-TB | lineage4.9 | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR4821310 | Other | lineage5 | None | ERR4821286 | Other | lineage4.8 | None | ERR4821417 | Other | lineage1.1.3.1 | None | ERR4821655 | Sensitive | lineage4 | None | SRR6046210 | Other | lineage4 | None | SRR6045614 | Other | lineage4.8 | None | SRR6045613 | Other | lineage3.1.3 | None | SRR6045621 | Other | lineage4.1.1.3 | None | SRR6045763 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045843 | Other | lineage4.2.2.2 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6045892 | Sensitive | None | SRR6044787 | Other | lineage4.4 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044873 | Other | lineage4.1.1.3.1 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045102 | Sensitive | lineage4.6.2.2 | gb | SRR6045928 | Other | lineage4.9 | None | SRR6044936 | Other | lineage4 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6045010 | Other | lineage4 | None | SRR6045986 | Other | lineage3 | None | SRR6045158 | Other | lineage4.9 | None | SRR6046177 | Other | lineage3.1.2 | None | SRR6045358 | Sensitive | lineage4.9 | None | SRR6045178 | Other | lineage3 | None | SRR6045232 | Other | lineage4.1.1.3 | gb | SRR6045365 | Other | lineage3 | gb | SRR6045376 | HR-TB | lineage4.1.2.1 | gb | SRR6046259 | Sensitive | lineage4.9 | None | SRR6045384 | Other | lineage4.1.2 | None | SRR6046376 | Other | lineage3 | None | SRR6046359 | Other | lineage4.7 | None | SRR6046343 | Other | lineage2.2.1 | None | ERR4872077 | Pre-XDR-TB | lineage5.2 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR6046456 | Other | lineage4.1.1.3.1 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR6046848 | Other | lineage4.6.5 | None | SRR6511621 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046761 | Other | lineage3 | gb | SRR6367397 | Other | lineage4.1.2.1 | None | SRR6650124 | Sensitive | lineage4.6.2 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR4872193 | MDR-TB | lineage4.6 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831618 | MDR-TB | lineage2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR6964566 | Other | lineage3.1.2 | None | SRR6982141 | RR-TB | lineage4.3.3 | None | ERR502510 | Sensitive | lineage4 | None | ERR2984800 | Pre-XDR-TB | lineage4.3.4.1 | None | SRR7131075 | Other | lineage4.8 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | ERR5311077 | RR-TB | La1.8.1 | None | SRR7131121 | Other | lineage4.3.3 | None | SRR7131123 | Other | lineage4.8 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | SRR7131216 | Other | lineage4.1.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR8651633 | Pre-XDR-TB | lineage4.4.2 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR323108 | HR-TB | lineage4 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR323107 | Other | lineage4 | None | ERR323045 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323066 | Sensitive | lineage4 | None | ERR037504 | Other | lineage4.9.1 | None | ERR323085 | Sensitive | lineage4 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR067699 | HR-TB | lineage4 | None | ERR1035122 | Sensitive | None | ERR1034634 | HR-TB | None | ERR1063857 | HR-TB | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063896 | Sensitive | None | ERR1063862 | HR-TB | None | ERR1063858 | HR-TB | None | ERR1063859 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR10796568 | Other | lineage4.9 | None | ERR10796566 | Other | lineage4.9;lineage4.3.4 | None | ERR10796553 | Other | lineage4.9;lineage1.1 | None | ERR10796572 | Other | lineage4.3.4.1 | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796577 | RR-TB | lineage4.9 | None | ERR10796589 | Other | lineage4.9 | None | ERR10796581 | HR-TB | lineage4.1.2 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796615 | Other | lineage4 | None | ERR10796592 | Other | lineage4 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796626 | Other | lineage4.1.2 | None | ERR10796618 | Other | lineage4.3.4.1 | None | ERR10796620 | Other | lineage4.1.1 | None | ERR10796631 | Other | lineage4.3.4 | None | ERR10796627 | Other | lineage4 | None | ERR10796629 | Other | lineage4 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR323115 | Sensitive | lineage4 | None | ERR10796634 | Other | lineage4 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR10796635 | Other | lineage4 | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR108471 | HR-TB | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR137286 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283021 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283028 | Other | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3445501 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797015 | HR-TB | None | ERR3797063 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797060 | Other | La1.8.1 | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797064 | Sensitive | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR4024991 | Other | None | ERR387051 | HR-TB | None | ERR3797087 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4188247 | HR-TB | None | ERR473332 | Other | lineage4 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769521 | HR-TB | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797474 | Other | None | ERR4798099 | Other | None | ERR4797505 | Sensitive | lineage3 | in | ERR6866022 | Other | None | ERR4799378 | Sensitive | lineage4 | None | ERR6358979 | Other | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR6197022 | Other | lineage4.9 | None | ERR6197034 | Other | lineage4.9 | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866410 | Sensitive | None | ERR6866639 | Other | None | ERR736872 | Sensitive | lineage4 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736834 | Sensitive | lineage4 | None | ERR736848 | HR-TB | None | ERR6866807 | HR-TB | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR9117732 | Other | lineage1.2.2.2 | None | ERR751326 | Sensitive | lineage4 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR736875 | HR-TB | lineage4 | None | ERR9117823 | Other | lineage1.1.1 | None | ERR9117740 | Other | lineage3.1.1 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR970413 | MDR-TB | lineage2.2.1 | None | ERR9117827 | Other | lineage1.2.2.2 | None | ERR9119483 | Pre-XDR-TB | lineage5.2 | None | ERR970445 | MDR-TB | lineage2.2.1 | None | SRR10808399 | Sensitive | lineage4 | None | ERR9787362 | Sensitive | lineage6 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR1173568 | Other | lineage4.9 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR11342683 | Other | lineage4.1.2 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR1158918 | Sensitive | lineage4 | None | SRR10808805 | Sensitive | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR18002948 | Other | lineage2.2 | None | SRR1173777 | Other | lineage4 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR14801749 | Sensitive | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR1791747 | Other | La1.8.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR18002945 | RR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002999 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR19303899 | Other | lineage3 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR19303819 | Other | lineage4.6.2.2 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR19303818 | Other | lineage4.3.4.2 | None | SRR19303817 | Other | lineage2.2.1 | None | SRR19303907 | Other | lineage4.8 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR19304115 | Other | lineage4.1.2.1 | None | SRR19303917 | Other | lineage2.2.1 | None | SRR19304104 | Other | lineage4.8 | None | SRR22048352 | Sensitive | lineage4.2.2.2 | None | SRR8692893 | Other | lineage4.9 | None | SRR22048536 | Other | lineage4.3.3 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | SRR8692790 | RR-TB | lineage4 | None | SRR8692897 | Other | lineage4.9 | None | SRR8692825 | Other | lineage4.9 | None | SRR8692800 | Other | lineage4 | None | SRR8692905 | HR-TB | None | ERR176778 | HR-TB | None | SRR8692863 | Other | lineage4;lineage2.2 | None | ERR4815171 | HR-TB | lineage1.1.2 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | ERR4815204 | Other | lineage2.2.1.1 | gb | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR4814637 | Other | lineage4.1.3 | gb | ERR176779 | HR-TB | None | ERR4815709 | Sensitive | lineage4.1.2.1 | None | ERR4814748 | Other | lineage4.8 | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675246 | Sensitive | lineage4 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR181824 | HR-TB | lineage4 | None | ERR176651 | HR-TB | None | SRR3675265 | Other | lineage4 | None | SRR3675456 | HR-TB | None | ERR181887 | HR-TB | None | ERR2027256 | Other | lineage4.1.2 | None | ERR2027220 | Other | lineage3.1.3 | None | ERR4815849 | Other | lineage3.1.1 | None | SRR3675509 | Other | lineage4.9 | None | SRR3675513 | Other | lineage4.8 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR2027277 | Other | lineage4.8 | None | ERR4818126 | RR-TB | lineage1 | None | ERR2027290 | RR-TB | lineage3.1 | None | SRR5341422 | HR-TB | lineage2.1 | None | SRR3675555 | HR-TB | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR4817826 | RR-TB | lineage4.5 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4 | None | ERR212138 | HR-TB | lineage4 | None | ERR4817189 | Other | lineage4.7 | None | ERR4818296 | Other | lineage4.2.2 | None | ERR245675 | Sensitive | lineage1.1.2 | None | SRR5341298 | Sensitive | lineage4 | None | ERR4819051 | Other | lineage4 | None | SRR5341453 | Sensitive | None | SRR5007204 | Other | lineage4.1.2.1 | None | SRR5341366 | Sensitive | lineage4 | None | ERR4819166 | Other | lineage3 | gb | SRR5341387 | Other | lineage4 | None | SRR5341425 | Other | lineage4 | None | ERR4819456 | Other | lineage4.8 | None | ERR4820478 | Other | lineage3.1.3 | None | ERR4819766 | Other | lineage4.4.1.1 | None | ERR4819770 | Other | lineage4.8 | gb | SRR5341455 | Sensitive | lineage4 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4818570 | Other | lineage4.3.3 | None | SRR5341373 | HR-TB | lineage4 | None | ERR4819198 | Other | lineage2.2.1 | None | ERR4820713 | HR-TB | lineage4.8 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341313 | HR-TB | None | SRR5341469 | Other | lineage4 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341319 | Other | lineage3 | None | ERR2515032 | Other | lineage3 | None | SRR5341315 | Sensitive | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341467 | Other | lineage4 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None |
|---|
