Rv0486 - c.456C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
47 Sensitive
2 RR-TB
33 HR-TB
6 MDR-TB
4 Pre-XDR-TB
1 XDR-TB
42 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 70 |
| lineage4.3.4 | 1 |
| 2 | |
| La1.7.X-unk4;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 2 |
| lineage1;lineage4.9 | 1 |
| lineage4.8 | 3 |
| lineage5.1.1 | 1 |
| lineage2.2.1 | 13 |
| lineage3 | 1 |
| lineage4.9;lineage7 | 2 |
| La1.8.1 | 3 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage2.2.1.2 | 3 |
| La1.7;lineage4.9;lineage7 | 3 |
| La1.7;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage1.1.2 | 2 |
| lineage4.6.2.2 | 1 |
| lineage4 | 1 |
| lineage6.1.3 | 1 |
| lineage4.3.4.1 | 3 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1;lineage4 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage3.1;lineage9 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.1.2.1 | 2 |
| La1.7.1;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.3.3 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.1.2 | 1 |
| lineage4.8;lineage4.9 | 2 |
| La1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 135 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR736872 | HR-TB | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR1063896 | Sensitive | None | ERR502511 | Sensitive | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR4821609 | Sensitive | lineage5.1.1 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR6511621 | Sensitive | lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | SRR29096527 | Sensitive | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675246 | Other | lineage4.9 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR26331611 | Sensitive | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR3797060 | Other | La1.8.1 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR5535933 | Other | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | SRR5341366 | Sensitive | lineage4.9 | None | SRR21733183 | RR-TB | lineage1.1.2 | None | SRR26399490 | Sensitive | lineage4.9 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | ERR4769457 | Other | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | ERR3273109 | HR-TB | lineage4 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR212138 | HR-TB | lineage4.9 | None | ERR3797073 | Other | La1.8.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | ERR926154 | Sensitive | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR29096225 | Sensitive | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR6866639 | Other | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR5341467 | Other | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR5341298 | Sensitive | lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR28351342 | HR-TB | lineage2.2.1;lineage4 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR926156 | Sensitive | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR4816199 | Sensitive | lineage1.1.2 | gb | ERR926165 | Sensitive | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR323066 | Sensitive | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR1159378 | Other | lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR1791747 | Other | La1.8.1 | None | ERR11466072 | Sensitive | lineage4.3.4.2.1 | None | ERR4798099 | Other | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR2446566 | Other | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR29096685 | Sensitive | lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR926163 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR5341303 | Sensitive | lineage4.9 | None | ERR4799378 | Sensitive | lineage4.9 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR212001 | HR-TB | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None |
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