EBG00000313325 - n.1005T>C
Drug resistance types
47 Sensitive
13 RR-TB
63 HR-TB
17 MDR-TB
17 Pre-XDR-TB
0 XDR-TB
96 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1 | 6 |
| 40 | |
| lineage4.9 | 44 |
| lineage4 | 53 |
| lineage2.1 | 4 |
| lineage3 | 13 |
| lineage3.1.3 | 2 |
| lineage4.3.4.2.1 | 2 |
| lineage4.6.2.2 | 2 |
| lineage4.4.1.1 | 2 |
| lineage4.3.2 | 3 |
| lineage4.1.2 | 3 |
| lineage1.1.2 | 2 |
| lineage4.3.3 | 5 |
| lineage4.1.1.3 | 4 |
| lineage1.1.1 | 2 |
| lineage2.2.1 | 23 |
| lineage4.8 | 4 |
| lineage1.1.3.1 | 1 |
| lineage4.2.2.2 | 1 |
| lineage1.1.1.1 | 2 |
| lineage2.2 | 3 |
| lineage2.2.1.1 | 2 |
| La2 | 2 |
| lineage4.2.1.1 | 1 |
| La1.8.1 | 3 |
| lineage4.3.2.1 | 1 |
| lineage4.9;lineage1.1 | 2 |
| lineage4.9;lineage4.1 | 1 |
| lineage4.3.4 | 1 |
| La1.3 | 2 |
| lineage4.9;La1.3 | 2 |
| La1 | 1 |
| lineage3.1.2 | 1 |
| lineage2.2.1.2 | 1 |
| lineage6 | 2 |
| lineage6.1.3 | 1 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.4.2 | 2 |
| lineage4.2.2.1 | 1 |
| lineage4.2.1 | 2 |
| La1.7.1 | 1 |
| lineage4;lineage2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 253 |
Geographic prevalence
Country level data for this variant is available for 13 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4815714 | Sensitive | lineage4.1.2.1 | gb | SRR3675488 | HR-TB | None | ERR4814976 | Other | lineage4.9 | None | SRR3675222 | Other | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675245 | Other | lineage4.1.2.1 | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675312 | HR-TB | lineage4 | None | ERR3275709 | HR-TB | lineage3 | nl | ERR176740 | HR-TB | None | SRR3675509 | Other | lineage4.9 | None | ERR212034 | HR-TB | None | ERR4816322 | Other | lineage4.9 | None | ERR4817069 | RR-TB | None | ERR4815556 | RR-TB | lineage3 | None | ERR2027220 | Other | lineage3.1.3 | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR2446509 | Other | lineage3 | nl | ERR212138 | HR-TB | lineage4 | None | SRR3675571 | HR-TB | None | ERR216965 | HR-TB | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4816702 | RR-TB | lineage4.6.2.2 | None | ERR4816868 | Other | lineage4.4.1.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR4818272 | Other | lineage4.3.2 | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR4816656 | HR-TB | None | ERR4816779 | Other | lineage3 | gb | ERR4816852 | Other | lineage4.9 | None | ERR4818104 | Other | lineage4.1.2 | gb | ERR245675 | Sensitive | lineage1.1.2 | None | ERR2512599 | Other | lineage3 | gb | ERR2503533 | Other | lineage4.1.2.1 | fi | ERR4819051 | Other | lineage4 | None | ERR4818929 | HR-TB | None | ERR4818952 | Other | lineage3 | None | ERR4818583 | Other | lineage4.3.3 | None | ERR4819175 | Other | lineage4.1.1.3 | gb | SRR5341373 | HR-TB | lineage4 | None | SRR5341453 | Sensitive | None | ERR4817554 | Other | lineage1.1.1 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341396 | Other | lineage4 | None | SRR5341387 | Other | lineage4 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR2513910 | Other | lineage3 | gb | SRR5341432 | HR-TB | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR2514215 | Other | lineage2.2.1 | gb | SRR5341425 | Other | lineage4 | None | SRR5341293 | HR-TB | lineage4 | None | ERR4820484 | Other | lineage4.8 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341315 | Sensitive | None | SRR5341313 | HR-TB | None | SRR5341308 | Sensitive | lineage4 | None | ERR4820586 | Other | lineage3 | gb | SRR5341310 | Other | lineage1.1.2 | None | SRR5341467 | Other | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341469 | Other | lineage4 | None | SRR5341470 | HR-TB | None | SRR6045519 | HR-TB | None | ERR4821616 | Other | lineage1.1.3.1 | None | ERR4822138 | Other | lineage4.1.2.1 | None | SRR6046141 | Other | lineage4.9 | None | SRR5818464 | Other | lineage4.9 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045124 | Other | lineage4.9 | None | SRR6046385 | Other | lineage4.9 | None | SRR6045217 | Other | lineage4 | None | SRR6045233 | HR-TB | None | SRR6046250 | Other | lineage4.9 | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6046644 | HR-TB | None | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | SRR6046492 | Other | None | SRR6046612 | Other | lineage1.1.1.1 | None | SRR6511621 | HR-TB | None | ERR4832002 | Pre-XDR-TB | lineage2.1 | None | ERR323037 | HR-TB | lineage4 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | ERR4832041 | HR-TB | lineage2.2 | vn | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831618 | MDR-TB | lineage2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR502524 | HR-TB | La2 | None | SRR6785281 | Other | lineage4.2.1.1 | None | ERR294266 | HR-TB | None | SRR6982192 | Sensitive | lineage4.1.1.3 | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | ERR502510 | Sensitive | lineage4 | None | ERR3275190 | Other | lineage3 | nl | SRR7535082 | Sensitive | lineage4 | None | ERR5087623 | Other | La1.8.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR323039 | HR-TB | None | SRR8651616 | MDR-TB | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR323053 | HR-TB | None | DRR184982 | RR-TB | lineage2.2.1 | None | ERR323066 | Sensitive | lineage4 | None | ERR323108 | HR-TB | lineage4 | None | DRR185000 | Other | lineage1.1.1.1 | None | ERR323107 | Other | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR067699 | HR-TB | lineage4 | None | ERR1063896 | Sensitive | None | ERR1035122 | Sensitive | None | ERR1023525 | HR-TB | lineage4 | None | ERR1063855 | Other | lineage4 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796553 | Other | lineage4.9;lineage1.1 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | ERR10796560 | MDR-TB | lineage4.9;lineage4.1 | None | ERR10796632 | Other | lineage4.3.3 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR3439265 | Other | lineage4.9 | None | ERR10796633 | RR-TB | lineage4.3.4 | None | ERR133825 | Sensitive | lineage4 | None | ERR137286 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3797043 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR4024991 | Other | None | ERR473332 | Other | lineage4 | None | ERR4188247 | HR-TB | None | ERR4195871 | Sensitive | lineage4.3.2 | None | ERR4769436 | Other | La1.3 | None | ERR4769419 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769446 | Sensitive | lineage4.9;La1.3 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769517 | Other | La1.3 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4798099 | Other | None | ERR4797184 | Sensitive | lineage4 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797264 | Sensitive | None | ERR4797474 | Other | None | ERR4798504 | Other | lineage3 | None | ERR4798262 | HR-TB | La1 | None | ERR4799025 | Pre-XDR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR736834 | Sensitive | lineage4 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR6358951 | HR-TB | lineage4 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6866022 | Other | None | ERR6359066 | HR-TB | lineage4 | None | ERR6866639 | Other | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736837 | Other | lineage4.9 | None | ERR736865 | HR-TB | None | ERR736848 | HR-TB | None | ERR736872 | Sensitive | lineage4 | None | ERR9786276 | Sensitive | lineage4.8 | None | ERR751326 | Sensitive | lineage4 | None | ERR9121512 | Sensitive | lineage4.3.2 | None | ERR9117826 | Other | lineage3.1.3 | None | ERR9786076 | Sensitive | lineage3 | None | ERR9786597 | Sensitive | lineage4.6.2.2 | None | ERR9787336 | Other | lineage6 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR9787362 | Sensitive | lineage6 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | ERR987722 | HR-TB | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR11349143 | Sensitive | lineage4.1.2 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1158918 | Sensitive | lineage4 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1172310 | HR-TB | None | SRR1173568 | Other | lineage4.9 | None | SRR1173777 | Other | lineage4 | None | SRR1174897 | HR-TB | None | SRR1180172 | Other | lineage2.2.1 | None | SRR11871419 | Pre-XDR-TB | lineage2.2.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR12199400 | HR-TB | lineage4.9;lineage1.1 | None | SRR11972327 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR13888750 | Other | La2 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR14782405 | HR-TB | None | SRR16149133 | MDR-TB | lineage4.2.2.1 | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR1791747 | Other | La1.8.1 | None | SRR16156775 | Other | lineage4.9 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR18913750 | Other | lineage2.2.1 | None | SRR8692790 | RR-TB | lineage4 | None | SRR19325518 | MDR-TB | lineage2.2.1 | None | SRR8692816 | Other | lineage4.9 | None | SRR8692868 | Sensitive | lineage4.9 | None | SRR8692812 | Other | lineage4.9 | None | SRR8692885 | Other | lineage4.9 | None | SRR8692879 | HR-TB | lineage4.9 | None | SRR8692905 | HR-TB | None | SRR8692897 | Other | lineage4.9 | None | SRR8692893 | Other | lineage4.9 | None | SRR8692782 | Other | lineage4.9 | None | SRR8692855 | Other | lineage4.9 | None | SRR8692825 | Other | lineage4.9 | None | SRR8692800 | Other | lineage4 | None | SRR8692882 | HR-TB | lineage4.9 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692871 | Other | lineage4.9 | None | SRR8692894 | Other | lineage4.9 | None | SRR8692888 | Other | lineage4.9 | None | SRR8692887 | Other | None | SRR8692899 | Other | lineage4.9 | None |
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