Rv0668 - c.894G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
108 Sensitive
6 RR-TB
48 HR-TB
14 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
53 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8;lineage4.9 | 2 |
| lineage4.9 | 129 |
| lineage4.2;lineage4.9 | 3 |
| 4 | |
| lineage4 | 4 |
| lineage4.9;lineage6.3 | 1 |
| lineage1.1.1 | 1 |
| lineage4.8 | 2 |
| La1.7;lineage4.9 | 4 |
| La2;lineage4.9 | 1 |
| lineage2.2.1 | 14 |
| lineage4.3.2.1 | 2 |
| lineage4.4.1.2 | 1 |
| La3;lineage4.9 | 8 |
| lineage4.1.1.2 | 1 |
| lineage3 | 6 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage4.1.2.1 | 3 |
| La1;lineage4.9 | 2 |
| lineage4.2.1 | 1 |
| lineage4.6.2.2 | 1 |
| lineage6.1.3 | 1 |
| La1.7.1 | 1 |
| lineage2.2.1.1 | 4 |
| lineage4.1.2 | 1 |
| lineage4.3.4.1 | 2 |
| La1.7;lineage4.9;lineage7 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| La1.8.1 | 3 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.9;lineage9 | 2 |
| lineage3.1.3 | 2 |
| lineage4.3.4.2.1 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage3.1.2.2 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage3.1.2.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage1.1.2 | 2 |
| lineage2.2.1;lineage4.9 | 2 |
| La1.2.BCG | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.7 | 1 |
| lineage4.4.1.1.1 | 1 |
| La3;lineage4 | 1 |
| lineage2;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage6.1.1 | 2 |
| lineage1.2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 233 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR29097037 | Other | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR987722 | MDR-TB | None | SRR5341387 | Other | lineage4.9 | None | SRR28351339 | MDR-TB | lineage4 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR4815471 | Sensitive | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR4796577 | HR-TB | None | ERR4819314 | Other | lineage1.1.1 | None | ERR137286 | Other | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR1181403 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | ERR4798823 | HR-TB | None | SRR1180391 | Sensitive | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | SRR1159378 | Other | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR1063855 | Other | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR2513259 | Other | lineage3 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4798504 | RR-TB | lineage3 | None | SRR7496471 | Sensitive | lineage4 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR4829606 | Sensitive | lineage4.1.2.1 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR1180977 | Sensitive | lineage4.9 | None | ERR9786528 | Sensitive | lineage4.6.2.2 | None | SRR5341303 | Sensitive | lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR323037 | Other | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR4799378 | Sensitive | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR926164 | Other | lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR29096150 | Other | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR5341308 | Sensitive | lineage4.9 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR29097026 | Other | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR6046385 | Sensitive | lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | SRR7535082 | Sensitive | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR502511 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | SRR3675235 | Sensitive | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR4819933 | Sensitive | lineage4.9 | None | SRR10808399 | Sensitive | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR1181349 | Sensitive | lineage4 | None | ERR3797073 | Other | La1.8.1 | None | SRR5341453 | Other | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR4769493 | Other | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR3675246 | Other | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | SRR5341467 | Other | lineage4.9 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR7496523 | Other | lineage4.7 | None | SRR1180312 | Sensitive | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR11252736 | Other | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR3283028 | Other | La3;lineage4 | None | ERR1063896 | Sensitive | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR736848 | Other | lineage4.9 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR4596902 | MDR-TB | lineage3 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR3273109 | HR-TB | lineage4 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None |
|---|
