Rv0668 - c.846A>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
59 Sensitive
3 RR-TB
37 HR-TB
18 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
48 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.6.2.2 | 3 |
| lineage4.9 | 92 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage4.3.4.2.1 | 1 |
| 3 | |
| lineage2.2.1 | 9 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage3 | 5 |
| lineage6.1.1 | 2 |
| lineage4.8 | 2 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.3 | 1 |
| lineage6.1.3 | 1 |
| La1.8.1 | 2 |
| La1.2.BCG | 1 |
| lineage4.3.2.1 | 3 |
| lineage4.9;lineage6.3 | 1 |
| lineage1;lineage4.9 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.5 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.9;lineage9 | 2 |
| lineage3.1.2.2 | 1 |
| lineage2.2.2 | 1 |
| lineage1.1.2 | 1 |
| La1.2.BCG;lineage4.9 | 1 |
| lineage4 | 3 |
| lineage3.1.2.1 | 1 |
| lineage4.1.2 | 2 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage5.1.4 | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.3.3 | 2 |
| lineage4.6.3;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.1.1.3 | 1 |
| La2;lineage4.9 | 1 |
| lineage1.2.2.2 | 1 |
| La1;lineage4.9 | 2 |
| lineage4.1.2.1 | 1 |
| La1.7;lineage4.9 | 1 |
| lineage4.2.1 | 1 |
| lineage1.1.3.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 166 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR11082350 | MDR-TB | lineage4.6.2.2 | None | ERR3797029 | Other | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR4798823 | HR-TB | None | SRR3675522 | Other | lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | ERR176741 | Other | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | ERR4816470 | HR-TB | lineage3 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR323037 | Other | lineage4.9 | None | ERR3797073 | Other | La1.8.1 | None | SRR5341453 | Other | lineage4.9 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR4769493 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR29096150 | Other | lineage4.9 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR29097026 | Other | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR926165 | Sensitive | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR1063896 | Sensitive | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR6358979 | Other | lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR108125 | RR-TB | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR1063855 | Other | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR124636 | Sensitive | lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR4798504 | RR-TB | lineage3 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR1915481 | Other | La1.2.BCG;lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR1181349 | Sensitive | lineage4 | None | SRR17832802 | HR-TB | lineage3 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR987722 | MDR-TB | None | SRR28351339 | MDR-TB | lineage4 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR502511 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR323107 | Sensitive | lineage4.9 | None | ERR13278785 | MDR-TB | lineage4.6.2.2 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR4829606 | Sensitive | lineage4.1.2.1 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | ERR926164 | Other | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR29097037 | Other | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None |
|---|
