EBG00000313339 - n.609T>C


Drug resistance types
67 Sensitive 31 RR-TB 74 HR-TB 30 MDR-TB 12 Pre-XDR-TB 0 XDR-TB 90 Other
lineage Counts
lineage Count
lineage4.3.4.2 2
lineage4.9 130
lineage2.2.1 16
lineage4.8 31
lineage2.2.1.1 2
lineage4.1.1.3 5
lineage4.1.2.1 10
lineage4.1.1.1 2
lineage4.3.4.2.1 4
lineage4.4.1.1 2
lineage4.3.4.1 4
lineage6.1.3 2
lineage2.2.1;lineage4 1
La1.8.1 3
lineage4.3.3 6
lineage1.2.2.2 1
lineage2;lineage4.9 1
La1.3 6
lineage6 1
lineage3 3
lineage4.4.1.1.1 4
La1;lineage4.1.2 1
M.canetti;lineage4.9 1
lineage4.6.2.2 1
lineage5.2 2
lineage2.2.1;lineage4.9 3
lineage4.8;lineage4.9 2
lineage4.7 1
lineage1.2.2.1;lineage4.4.1.1 2
La1.7;M.canetti;lineage4.9 1
lineage2.2.2 3
lineage2.2;lineage4.9 1
La1;lineage2;lineage4.9 1
lineage1.1.2 3
lineage4 3
La1.2;La1.8.1 1
lineage4.3.2.1 3
La1;lineage4.9 3
lineage4.2.1 3
La1.7;lineage4.9 3
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
lineage4.2.2.2 1
lineage4.9.1 1
lineage4.2;lineage4.6.3;lineage4.9.1 2
La1.2.BCG 2
lineage1.1.3.1 1
1
lineage4.3.2 2
lineage3.1.3 1
lineage4.6.1.2 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
lineage4.1.2 2
La3;M.canetti;lineage4.9 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
lineage3;lineage4 1
lineage4.8.1 1
lineage4.4.2 1
lineage3.1.2;lineage4.1.1.3.1 1
lineage2.2.1;lineage4.5 1
lineage1.1.3.2 1
lineage4.1.1.3.1;lineage4.9 1
La1.7;lineage4.3.4.1 1
La1.7 1
La1.4 1
La1.7;lineage4.9;lineage6 1
spoligotype Counts
spoligotype Count
None 304
Geographic prevalence
Country level data for this variant is available for 16 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR1035317 RR-TB lineage4.3.4.2 br
ERR1035296 HR-TB lineage4.9 br
SRR18002933 Other lineage2.2.1 None
ERR978747 Other lineage4.8 None
ERR10796633 Other lineage4.3.4.2 None
SRR18909918 Other lineage2.2.1.1 None
ERR978726 RR-TB lineage4.8 None
SAMEA3501015 Other lineage4.8 None
ERR11466044 Other lineage4.1.1.3 None
ERR926162 Sensitive lineage4.9 None
ERR6866125 Sensitive lineage4.1.2.1 None
ERR176741 Other lineage4.9 None
SRR11342642 MDR-TB lineage4.1.1.1 None
ERR176518 Sensitive lineage4.3.4.2.1 None
SRR10869071 MDR-TB lineage2.2.1 None
ERR1213873 MDR-TB lineage4.3.4.2.1 rw
ERR867574 Other lineage4.9 None
ERR216965 Sensitive lineage4.9 None
ERR4818851 RR-TB lineage4.4.1.1 None
ERR1035297 MDR-TB lineage4.3.4.1 br
ERR978735 Other lineage4.8 None
ERR9787256 Other lineage6.1.3 None
ERR4818536 Other lineage4.9 None
ERR4769439 HR-TB lineage4.9 None
SRR5341384 HR-TB lineage4.9 None
ERR1063855 Other lineage4.9 None
SRR12708415 HR-TB lineage2.2.1 None
SRR1181351 Sensitive lineage4.9 None
SRR1181237 Sensitive lineage2.2.1;lineage4 None
ERR3797019 Other La1.8.1 None
ERR323066 HR-TB lineage4.9 None
SRR11342636 MDR-TB lineage4.3.3 None
ERR6359066 HR-TB lineage4.9 None
SRR12708399 MDR-TB lineage4.3.4.2.1 None
SRR18002881 Pre-XDR-TB lineage2.2.1 None
ERR926160 Other lineage4.9 None
SRR10315567 HR-TB lineage2.2.1 None
SRR12708411 HR-TB lineage1.2.2.2 None
SRR1172807 Sensitive lineage4.9 None
ERR867523 Pre-XDR-TB lineage2.2.1 None
ERR978693 Other lineage4.8 None
ERR485006 HR-TB lineage4.9 None
ERR1213875 Sensitive lineage4.3.3 de
SRR12708413 HR-TB lineage4.1.1.3 None
ERR926159 Sensitive lineage4.9 None
ERR323107 HR-TB lineage4.9 None
SRR1180946 Sensitive lineage2;lineage4.9 None
ERR4796254 Other lineage4.9 None
SRR18002967 HR-TB lineage2.2.1 None
ERR4769552 Sensitive La1.3 None
SRR1172717 Sensitive lineage4.9 None
ERR9787362 Sensitive lineage6 None
SRR18912069 Other lineage4.1.2.1 None
SRR10808399 Sensitive lineage4.9 None
ERR2228910 Other lineage4.8 None
SRR5341453 Other lineage4.9 None
ERR6358951 Sensitive lineage4.9 None
ERR867567 RR-TB lineage3 None
ERR4819462 Sensitive lineage4.9 None
ERR6359069 HR-TB lineage4.9 None
ERR1035294 MDR-TB lineage4.1.2.1 br
ERR2851356 Sensitive lineage4.9 None
ERR4769444 HR-TB lineage4.9 None
ERR2228900 Other lineage4.8 None
SRR11342696 MDR-TB lineage4.4.1.1.1 None
ERR4769516 Sensitive lineage4.9 None
SRR13180363 Sensitive lineage4.1.2.1 None
SRR1180391 Sensitive lineage4.9 None
SRR9970978 Other La1;lineage4.1.2 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
ERR3283040 HR-TB lineage4.9 None
SRR11342676 HR-TB lineage4.6.2.2 None
ERR5311094 HR-TB lineage4.9 None
ERR4872077 Pre-XDR-TB lineage5.2 None
ERR970413 MDR-TB lineage2.2.1 None
ERR978726_ERR978727 RR-TB lineage4.8 None
SRR1181390 Sensitive lineage2.2.1;lineage4.9 None
ERR1035315 Pre-XDR-TB lineage4.3.4.1 br
ERR736834 HR-TB lineage4.9 None
ERR6866022 HR-TB lineage4.8;lineage4.9 None
ERR473303 Sensitive lineage4.9 None
SRR5341299 HR-TB lineage4.9 None
ERR926155 Other lineage4.9 None
SRR1175506 Sensitive lineage4.9 None
SRR1735598 RR-TB lineage4.9 None
SRR1180410 Sensitive lineage4.9 None
SRR7496523 Other lineage4.7 None
SRR5341469 HR-TB lineage4.9 None
SAMEA3501052 RR-TB lineage4.8 None
SAMEA3501046 RR-TB lineage4.8 None
SAMEA3501065 RR-TB lineage4.8 None
ERR6358979 HR-TB lineage4.9 None
ERR4808964 RR-TB lineage2.2.1 None
ERR11465711 Other lineage1.2.2.1;lineage4.4.1.1 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
ERR1035318 Pre-XDR-TB lineage4.3.4.1 br
SRR12708418 HR-TB lineage2.2.1 None
ERR4831616 MDR-TB lineage2.2.1 None
SRR20632814 Sensitive lineage4.9 None
SRR1181215 Sensitive lineage4.4.1.1.1 None
ERR4809333 Pre-XDR-TB lineage2.2.2 None
SRR10808668 Other lineage2.2.1 None
ERR4769408 Other La1.3 None
ERR978694_ERR978693 Other lineage4.8 None
ERR9786076 Other lineage3 None
ERR4188247 HR-TB lineage4.9 None
SRR9971041 MDR-TB lineage4.3.3 None
SRR6046141 Other lineage4.9 None
ERR6866410 HR-TB lineage4.9 None
ERR926156 Other lineage4.9 None
ERR867575 Other lineage4.9 None
ERR245794 HR-TB lineage4.3.4.2.1 None
ERR736848 Other lineage4.9 None
ERR926157 Other lineage4.9 None
SRR1184021 Sensitive lineage4.9 None
ERR4815550 Other lineage2.2;lineage4.9 None
ERR978761_ERR978762_ERR978760 RR-TB lineage4.8 None
ERR067699 HR-TB La1;lineage2;lineage4.9 None
SRR1175487 Sensitive lineage4.9 None
ERR978762 Other lineage4.8 None
ERR9119483 Pre-XDR-TB lineage5.2 None
ERR736837 Pre-XDR-TB lineage4.9 None
ERR3283030 HR-TB lineage4.9 None
ERR1063883 HR-TB lineage4.9 None
ERR4769514 Other La1.3 None
SRR5341310 Other lineage1.1.2 None
SRR1181349 Sensitive lineage4 None
SRR7240033 Other La1.2;La1.8.1 None
SRR14801749 HR-TB lineage4.9 None
SRR1181283 Sensitive lineage4.9 None
ERR926158 Sensitive lineage4.9 None
SRR1175052 HR-TB lineage4.9 None
SRR12708370 Pre-XDR-TB lineage2.2.2 None
ERR11465801 Other lineage4.3.4.1 None
SRR7496471 Sensitive lineage4 None
SRR5341461 HR-TB lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
ERR4769550 Sensitive La1;lineage4.9 None
ERR867572 Other lineage4.9 None
SRR10808805 Other La1;lineage4.9 None
ERR1035122 HR-TB lineage4.9 None
SRR1181325 Sensitive lineage4.9 None
ERR751326 Other lineage4.9 None
ERR867541 MDR-TB lineage4.2.1 None
SRR3675488 Other La1.7;lineage4.9 None
SRR1180319 Sensitive lineage4.9 None
ERR4769436 Other La1.3 None
SRR1180250 Other lineage4.9 None
ERR11465714 Other lineage1.2.2.1;lineage4.4.1.1 None
SRR11342664 MDR-TB lineage2.2.2 None
ERR4821704 Other lineage4.3.3 None
ERR4596910 Sensitive lineage4.9 None
SRR12708396 MDR-TB lineage4.3.2.1 None
ERR736831 Other lineage4.9 None
SRR12416842 HR-TB lineage4.9 None
SRR6044875 Other lineage4.9 None
ERR926164 Other lineage4.9 None
ERR2512423 Other lineage4.1.1.3 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
SRR1180444 Sensitive lineage4.9 None
ERR867538 Other lineage4.2.2.2 None
ERR10796636 Other lineage4.1.2.1 None
SRR10614047 Sensitive lineage4.9 None
ERR4797184 HR-TB lineage4.9 None
ERR978734_ERR978733_ERR978735 RR-TB lineage4.8 None
ERR978746 RR-TB lineage4.8 None
ERR978750 RR-TB lineage4.8 None
ERR11465189 RR-TB lineage4.9.1 None
ERR4815310 Other lineage2.2.1;lineage4.9 None
ERR1023509 MDR-TB lineage4.9 None
SAMEA3501070 RR-TB lineage4.8 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR4796929 Sensitive lineage4.9 None
ERR4818110 Sensitive lineage4.9 None
SRR1915487 Other La1.2.BCG None
ERR978754 RR-TB lineage4.8 None
ERR473334 HR-TB lineage4.9 None
ERR978760 RR-TB lineage4.8 None
ERR4769442 Sensitive lineage4.9 None
ERR1035300 HR-TB lineage4.1.2.1 br
ERR971389 Other lineage4.9 None
ERR8479578 HR-TB lineage1.1.3.1 None
ERR1063896 HR-TB None
ERR245675 Sensitive lineage1.1.2 None
ERR4797474 Other lineage4.9 None
ERR978733 RR-TB lineage4.8 None
ERR4797264 HR-TB lineage4.9 None
ERR736872 HR-TB lineage4.9 None
SRR1181368 Other lineage4.9 None
SRR1180300 Sensitive lineage4.9 None
ERR978746_ERR978747_ERR978748 RR-TB lineage4.8 None
ERR1035316 MDR-TB lineage4.3.2 br
ERR4819357 Sensitive lineage4.9 None
SRR7069347 Other lineage4.1.2.1 None
ERR2513121 Sensitive lineage3.1.3 None
ERR4024991 HR-TB lineage4.8;lineage4.9 None
SRR6045010 Sensitive lineage4.9 None
SRR11349145 Pre-XDR-TB lineage4.4.1.1.1 None
ERR702405 HR-TB lineage4.9 None
SRR1180420 Sensitive lineage4.9 None
ERR2229436 Other lineage4.8 None
ERR2124083 HR-TB lineage4.6.1.2 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
SRR9970980 HR-TB lineage4.1.2 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
SRR1791747 Other La1.8.1 None
ERR926165 Other lineage4.9 None
SRR1181402 Sensitive lineage4.9 None
SRR3675492 Other La1.7;lineage4.9 None
SRR7535082 Other lineage4.9 None
ERR3797015 HR-TB lineage4.9 None
ERR3077969 Other La1.3 None
ERR1035295 MDR-TB lineage4.1.2.1 br
ERR926154 Sensitive lineage4.9 None
ERR867524 Pre-XDR-TB lineage4.2.1 None
SRR5341300 HR-TB lineage4.9 None
ERR2026698 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR323115 Sensitive lineage4.9 None
SRR3675230 Other lineage3;lineage4 None
SRR9971150 RR-TB lineage4.8.1 None
SRR12708407 HR-TB lineage4.3.2.1 None
ERR978750_ERR978752_ERR978751 RR-TB lineage4.8 None
SRR10315751 MDR-TB lineage4.8 None
SRR11342651 MDR-TB lineage4.1.1.1 None
ERR978755_ERR978756_ERR978754_ERR978757 RR-TB lineage4.8 None
SRR16156817 Other lineage4.9 None
SRR20969542 Other lineage4.4.2 None
SRR1180312 Sensitive lineage4.9 None
SRR12708414 HR-TB lineage2.2.1 None
SRR7236177 Other La1.8.1 None
ERR124636 HR-TB lineage4.9 None
SRR5341308 HR-TB lineage4.9 None
ERR2514430 Other lineage3.1.2;lineage4.1.1.3.1 None
ERR1063846 HR-TB lineage4.9 None
ERR4811035 Pre-XDR-TB lineage2.2.1;lineage4.5 None
SRR6511621 HR-TB lineage4.9 None
SRR6789624 HR-TB lineage4.1.1.3 None
ERR5917972 MDR-TB lineage4.4.1.1 za
ERR323062 HR-TB lineage4.9 None
ERR3273109 HR-TB lineage4 None
ERR926163 Other lineage4.9 None
SRR1180355 Sensitive lineage4.9 None
ERR1213930 Other lineage4.3.2 pe
ERR1023525 HR-TB La1.7;lineage4.9 None
SRR22250026 Sensitive lineage3 None
SAMEA3501063 RR-TB lineage4.8 None
SRR1183054 Sensitive lineage4.9 None
SRR1180977 Sensitive lineage4.9 None
SRR1175513 Sensitive lineage4.9 None
ERR323037 Other lineage4.9 None
ERR108471 HR-TB lineage4.9 None
ERR4797193 HR-TB lineage1.1.2 None
ERR2514801 Other lineage1.1.3.2 gb
SRR1172885 HR-TB lineage4.9 None
SRR14802079 MDR-TB lineage4.2.1 None
SRR5007161 RR-TB lineage4.1.1.3.1;lineage4.9 None
SRR9971112 HR-TB lineage2.2.1 None
SRR12708409 HR-TB lineage4.3.3 None
ERR867540 MDR-TB lineage2.2.1 None
SRR10809074 HR-TB lineage4.9 None
ERR2229204 Other lineage4.8 None
ERR4831621 MDR-TB lineage2.2.1.1 None
SRR3675509 Other lineage4.9 None
ERR3290633 Other lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR133825 HR-TB La1;lineage4.9 None
ERR11465802 Other La1.7;lineage4.3.4.1 None
SAMEA3501067 RR-TB lineage4.8 None
SRR19295647 HR-TB lineage4.9 None
SRR21677886 Sensitive lineage4.9 None
SRR1175512 Sensitive lineage4.9 None
SRR11342658 RR-TB lineage4.1.2 None
SRR1180399 Sensitive lineage4.9 None
SRR1184114 Sensitive lineage2.2.1;lineage4.9 None
SRR3675222 Other La1.7 None
SRR3675389 Other lineage4.9 None
SRR12708392 Other lineage2.2.1 None
SRR5341467 Other lineage4.9 None
SRR1915485 Other La1.2.BCG None
ERR4769555 Sensitive La1.3 None
SRR1180413 Sensitive lineage4.9 None
SRR16278274 Other La1.4 None
ERR473323 HR-TB lineage4.9 None
SRR12708419 Other lineage4.3.3 None
ERR1034634 HR-TB lineage4.9 None
ERR2026697 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR11342644 MDR-TB lineage4.4.1.1.1 None
ERR926161 Sensitive lineage4.9 None
ERR1035299 MDR-TB lineage4.1.2.1 br
ERR736856 HR-TB lineage4.9 None
ERR6866547 Other La1.7;lineage4.9;lineage6 None
SRR1180406 Sensitive lineage4.9 None
ERR3797029 Other lineage4.9 None
ERR6359074 HR-TB lineage4.9 None
ERR4819051 Sensitive lineage4.9 None
ERR978755 RR-TB lineage4.8 None
SRR7070320 Other lineage4.8 None
ERR2513382 RR-TB lineage4.1.1.3 None
SRR1180345 Other lineage4.9 None
ERR6359070 Sensitive lineage4.9 None
ERR4798099 HR-TB lineage4.9 None
ERR9787336 RR-TB lineage6.1.3 None
ERR2693252 HR-TB lineage4.9 None
SRR1180375 Sensitive lineage4.9 None
ERR2513082 Other lineage4.1.2.1 gb