EBG00000313339 - n.609T>C
Drug resistance types
67 Sensitive
31 RR-TB
74 HR-TB
30 MDR-TB
12 Pre-XDR-TB
0 XDR-TB
90 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8 | 31 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage2.2.1 | 16 |
| lineage1.2.2.1;lineage4.4.1.1 | 2 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage4.9 | 130 |
| lineage3.1.3 | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage2.2.2 | 3 |
| lineage4.1.2 | 2 |
| La3;M.canetti;lineage4.9 | 1 |
| La1.8.1 | 3 |
| La1.7;lineage4.9 | 3 |
| lineage4.1.1.3 | 5 |
| lineage4.1.2.1 | 10 |
| lineage4.1.1.1 | 2 |
| lineage4.2.1 | 3 |
| lineage4.3.4.2.1 | 4 |
| lineage3;lineage4 | 1 |
| lineage4.4.1.1 | 2 |
| lineage4.3.4.1 | 4 |
| lineage4.4.2 | 1 |
| lineage4 | 3 |
| lineage4.3.2.1 | 3 |
| lineage4.3.2 | 2 |
| La1.3 | 6 |
| lineage2;lineage4.9 | 1 |
| lineage6 | 1 |
| lineage4.3.3 | 6 |
| La1;lineage4.9 | 3 |
| La1.7;lineage4.3.4.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La1;lineage4.1.2 | 1 |
| lineage4.6.2.2 | 1 |
| La1.2.BCG | 2 |
| lineage4.9.1 | 1 |
| lineage1.1.2 | 3 |
| lineage3 | 3 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.3.4.2 | 2 |
| lineage2.2.1.1 | 2 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.8.1 | 1 |
| lineage6.1.3 | 2 |
| lineage5.2 | 2 |
| La1.2;La1.8.1 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.4.1.1.1 | 4 |
| lineage4.2.2.2 | 1 |
| lineage2.2.1;lineage4.9 | 3 |
| La1.4 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.6.1.2 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage3.1.2;lineage4.1.1.3.1 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage1.1.3.2 | 1 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 1 |
| La1.7 | 1 |
| lineage4.7 | 1 |
| lineage1.1.3.1 | 1 |
| 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 304 |
Geographic prevalence
Country level data for this variant is available for 16 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR11465711 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | ERR978733 | RR-TB | lineage4.8 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4024991 | HR-TB | lineage4.8;lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR4798099 | HR-TB | lineage4.9 | None | ERR702405 | HR-TB | lineage4.9 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | ERR1035296 | HR-TB | lineage4.9 | br | SRR9970980 | HR-TB | lineage4.1.2 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR11466044 | Other | lineage4.1.1.3 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR1035295 | MDR-TB | lineage4.1.2.1 | br | ERR926154 | Sensitive | lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR1213873 | MDR-TB | lineage4.3.4.2.1 | rw | ERR323115 | Sensitive | lineage4.9 | None | SRR3675230 | Other | lineage3;lineage4 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR1035297 | MDR-TB | lineage4.3.4.1 | br | ERR978735 | Other | lineage4.8 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | SRR16156817 | Other | lineage4.9 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR14801749 | HR-TB | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR11465801 | Other | lineage4.3.4.1 | None | SRR7496471 | Sensitive | lineage4 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | SRR1172807 | Sensitive | lineage4.9 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | ERR1035122 | HR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | ERR1213930 | Other | lineage4.3.2 | pe | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | SRR1180250 | Other | lineage4.9 | None | ERR11465714 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR18002967 | HR-TB | lineage2.2.1 | None | ERR4769552 | Sensitive | La1.3 | None | SRR1172717 | Sensitive | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR9787362 | Sensitive | lineage6 | None | SRR18912069 | Other | lineage4.1.2.1 | None | SRR10808399 | Sensitive | lineage4.9 | None | ERR2228910 | Other | lineage4.8 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR5341453 | Other | lineage4.9 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | SRR10809074 | HR-TB | lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR6359069 | HR-TB | lineage4.9 | None | SRR3675509 | Other | lineage4.9 | None | ERR1035294 | MDR-TB | lineage4.1.2.1 | br | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR11465802 | Other | La1.7;lineage4.3.4.1 | None | ERR2228900 | Other | lineage4.8 | None | SRR19295647 | HR-TB | lineage4.9 | None | ERR2512423 | Other | lineage4.1.1.3 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR4769516 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR978746 | RR-TB | lineage4.8 | None | SRR11342676 | HR-TB | lineage4.6.2.2 | None | ERR978750 | RR-TB | lineage4.8 | None | SRR5341467 | Other | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR1915485 | Other | La1.2.BCG | None | ERR970413 | MDR-TB | lineage2.2.1 | None | ERR4769555 | Sensitive | La1.3 | None | ERR11465189 | RR-TB | lineage4.9.1 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | ERR1023509 | MDR-TB | lineage4.9 | None | ERR473303 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR926155 | Other | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR1035300 | HR-TB | lineage4.1.2.1 | br | SAMEA3501046 | RR-TB | lineage4.8 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR1035318 | Pre-XDR-TB | lineage4.3.4.1 | br | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR7070320 | Other | lineage4.8 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | ERR4819357 | Sensitive | lineage4.9 | None | SRR7069347 | Other | lineage4.1.2.1 | None | SRR1180345 | Other | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR2693252 | HR-TB | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | ERR9786076 | Other | lineage3 | None | ERR2229436 | Other | lineage4.8 | None | SRR18002933 | Other | lineage2.2.1 | None | ERR978747 | Other | lineage4.8 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR10796633 | Other | lineage4.3.4.2 | None | SRR18909918 | Other | lineage2.2.1.1 | None | ERR978726 | RR-TB | lineage4.8 | None | ERR926156 | Other | lineage4.9 | None | ERR3077969 | Other | La1.3 | None | ERR176741 | Other | lineage4.9 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR867574 | Other | lineage4.9 | None | ERR216965 | Sensitive | lineage4.9 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR4818536 | Other | lineage4.9 | None | ERR978762 | Other | lineage4.8 | None | ERR9119483 | Pre-XDR-TB | lineage5.2 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR4769514 | Other | La1.3 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR1181349 | Sensitive | lineage4 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | SRR7236177 | Other | La1.8.1 | None | ERR124636 | HR-TB | lineage4.9 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | ERR926160 | Other | lineage4.9 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR867572 | Other | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR1213875 | Sensitive | lineage4.3.3 | de | SRR22250026 | Sensitive | lineage3 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR4821704 | Other | lineage4.3.3 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR6044875 | Other | lineage4.9 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR1180444 | Sensitive | lineage4.9 | None | ERR867538 | Other | lineage4.2.2.2 | None | SRR1180391 | Sensitive | lineage4.9 | None | ERR4797184 | HR-TB | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR16278274 | Other | La1.4 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | ERR736834 | HR-TB | lineage4.9 | None | ERR6866022 | HR-TB | lineage4.8;lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR2026697 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR978760 | RR-TB | lineage4.8 | None | ERR971389 | Other | lineage4.9 | None | ERR6358979 | HR-TB | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR4797474 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4797264 | HR-TB | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | ERR978755 | RR-TB | lineage4.8 | None | ERR1035316 | MDR-TB | lineage4.3.2 | br | SRR20632814 | Sensitive | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR10808668 | Other | lineage2.2.1 | None | ERR4769408 | Other | La1.3 | None | ERR9787336 | RR-TB | lineage6.1.3 | None | ERR2513082 | Other | lineage4.1.2.1 | gb | SRR1180420 | Sensitive | lineage4.9 | None | ERR1035317 | RR-TB | lineage4.3.4.2 | br | ERR2124083 | HR-TB | lineage4.6.1.2 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR926165 | Other | lineage4.9 | None | ERR6866410 | HR-TB | lineage4.9 | None | SRR7535082 | Other | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR867575 | Other | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR736848 | Other | lineage4.9 | None | ERR926157 | Other | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR2026698 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR067699 | HR-TB | La1;lineage2;lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR3797019 | Other | La1.8.1 | None | ERR323066 | HR-TB | lineage4.9 | None | SRR11342636 | MDR-TB | lineage4.3.3 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR5341308 | HR-TB | lineage4.9 | None | ERR2514430 | Other | lineage3.1.2;lineage4.1.1.3.1 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | SRR6511621 | HR-TB | lineage4.9 | None | ERR4769550 | Sensitive | La1;lineage4.9 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | ERR978693 | Other | lineage4.8 | None | ERR323062 | HR-TB | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR926163 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR323107 | HR-TB | lineage4.9 | None | ERR4796254 | Other | lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR2514801 | Other | lineage1.1.3.2 | gb | SRR1172885 | HR-TB | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | SRR9971112 | HR-TB | lineage2.2.1 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR867567 | RR-TB | lineage3 | None | ERR2229204 | Other | lineage4.8 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR10614047 | Sensitive | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR13180363 | Sensitive | lineage4.1.2.1 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR3675222 | Other | La1.7 | None | SRR3675389 | Other | lineage4.9 | None | ERR4872077 | Pre-XDR-TB | lineage5.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR1035315 | Pre-XDR-TB | lineage4.3.4.1 | br | ERR1034634 | HR-TB | lineage4.9 | None | SRR1735598 | RR-TB | lineage4.9 | None | ERR978754 | RR-TB | lineage4.8 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | SRR5341469 | HR-TB | lineage4.9 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR1035299 | MDR-TB | lineage4.1.2.1 | br | ERR736856 | HR-TB | lineage4.9 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | ERR1063896 | HR-TB | None |
|---|
