EBG00000313339 - n.609T>C


Drug resistance types
103 Sensitive 38 RR-TB 45 HR-TB 31 MDR-TB 18 Pre-XDR-TB 0 XDR-TB 154 Other
lineage Counts
lineage Count
lineage4.1.1.3.1 2
lineage4.3.3 15
lineage4.8 28
lineage4.8.2 1
lineage4.4.1.1 7
lineage4.9 75
32
lineage3 14
lineage1.1.2 6
lineage4 55
lineage4.1.2 4
lineage2.2.1 34
lineage1.2.2.2 2
lineage4.6.2.2 3
lineage4.1.1.3.1;lineage3.1.2 1
lineage3.1.1 2
lineage1.1.3.1 4
lineage4.1.2.1 24
lineage4.1.1 1
lineage4.3.2.1 2
lineage4.2.2.2 2
lineage4.2.1 2
lineage3.1 1
lineage3.1.2.2 1
lineage4.7 3
lineage4.3.2 2
lineage4.3.4.2.1 3
lineage4.3.1.1 1
La1.3 8
lineage2.1 3
lineage5.2 2
lineage2.2.1.1 2
lineage4.4.1.1;lineage1.2.2.1 2
lineage4.3.4.1 4
lineage5.1.1 1
lineage4.1 1
lineage4.1.1.3 4
La1.8.1 6
lineage4.8.1 1
lineage4.9.1 1
lineage4.3.4 1
lineage4.3.4.1;La1.7 1
lineage4;La1.3 1
lineage4.9;La1.3 1
lineage1.1.3.2 2
lineage4.5;lineage2.2.1 1
lineage2.2.2 1
lineage4.6.1.2 1
lineage4.3 1
lineage6.1.3 1
lineage6 3
lineage4.4.1.1.1 2
lineage4.9;lineage2.2 1
lineage2.2 1
lineage2 1
La1.4 1
lineage4.4.2 1
lineage4.3.4.2 1
lineage3.1.3 2
lineage3.1.2.1 1
lineage1 1
lineage6.3.1 1
spoligotype Counts
spoligotype Count
None 389
Geographic prevalence
Country level data for this variant is available for 16 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR5007161 RR-TB lineage4.1.1.3.1 None
ERR4818570 Other lineage4.3.3 None
ERR4818583 Other lineage4.3.3 None
SAMEA3501067 RR-TB lineage4.8 None
SRR5007167 RR-TB lineage4.1.1.3.1 None
SRR5007169 RR-TB lineage4.8.2 None
ERR4819096 Other lineage4.4.1.1 None
SRR5074711 Sensitive lineage4.3.3 None
SRR5007168 RR-TB lineage4.9 None
SRR5341453 Sensitive None
ERR4817584 MDR-TB lineage3 None
ERR2512941 Other lineage1.1.2 None
SRR5341366 Sensitive lineage4 None
ERR2513743 Other lineage4.1.2 None
SRR5153091 HR-TB lineage4.3.3 None
ERR4820256 Other lineage2.2.1 None
SRR5341387 Other lineage4 None
ERR4819217 Other lineage1.2.2.2 None
ERR4819357 Other lineage4.9 None
ERR4820723 RR-TB lineage4.4.1.1 None
ERR4819242 HR-TB lineage4.6.2.2 None
SRR5341425 Other lineage4 None
ERR4820746 RR-TB lineage3 None
ERR4819462 Other lineage4 None
ERR2514430 Other lineage4.1.1.3.1;lineage3.1.2 None
ERR4820410 Pre-XDR-TB lineage3.1.1 None
SRR5341298 Sensitive lineage4 None
ERR4819772 RR-TB lineage1.1.3.1 None
SRR5341455 Sensitive lineage4 None
SRR5341303 RR-TB lineage4 None
SRR5341300 Other lineage4 None
SRR5341299 Sensitive lineage4 None
SAMEA3501070 RR-TB lineage4.8 None
ERR4819864 RR-TB lineage1.1.3.1 None
ERR4820817 Other lineage4.1.2.1 None
SRR5341308 Sensitive lineage4 None
ERR1023509 Other None
ERR4819933 Other lineage4.9 None
ERR4820829 Other lineage4.8 None
SRR5341310 Other lineage1.1.2 None
ERR2515032 Other lineage3 None
ERR2514968 Other lineage4.3.3 None
ERR4820151 RR-TB lineage4.8 None
ERR4820075 Other lineage4.1.2.1 None
SRR5341467 Other lineage4 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
ERR2515230 Sensitive lineage4.8 None
SRR5341461 Sensitive lineage4 None
ERR4821796 Other lineage4.1.1 None
SRR5341465 Pre-XDR-TB lineage2.2.1 None
ERR4821372 Other lineage4.1.2.1 None
SRR5341469 Other lineage4 None
SAMEA3501046 RR-TB lineage4.8 None
ERR4821119 Other lineage4.4.1.1 None
SRR6045516 Other lineage3.1.1 None
SRR6045519 HR-TB None
ERR4821286 Other lineage4.8 None
ERR4821331 HR-TB lineage4.8 None
SAMEA3501052 RR-TB lineage4.8 None
ERR4821057 HR-TB lineage4 None
SRR6046089 Other lineage4.1.2.1 None
ERR4821222 Other lineage4.3.2.1 None
ERR4822261 RR-TB lineage2.2.1 None
ERR4821655 Sensitive lineage4 None
ERR4821417 Other lineage1.1.3.1 None
SRR5818586 RR-TB lineage4.2.2.2 None
ERR4821679 Other lineage4.3.3 None
ERR4821704 MDR-TB lineage4.3.3 None
SRR6045664 Other lineage4.2.1 None
SRR6046141 Other lineage4.9 None
SRR6045778 Other lineage3.1 None
SRR6045191 Sensitive lineage4.9 None
SRR6045002 MDR-TB lineage4.9 None
SRR6045010 Other lineage4 None
SRR6045017 Other lineage3.1.2.2 None
SRR6045832 HR-TB lineage4.9 None
SRR6045892 Sensitive None
SRR6044875 HR-TB lineage4.9 None
SRR6046259 Sensitive lineage4.9 None
SRR6046359 Other lineage4.7 None
SRR6046385 Other lineage4.9 None
SRR6046343 Other lineage2.2.1 None
ERR1213930 Other lineage4.3.2 pe
ERR1213873 MDR-TB lineage4.3.4.2.1 rw
ERR1213875 Sensitive lineage4.3.3 de
ERR4829337 Other lineage4.8 None
ERR2851356 Sensitive lineage4.9 None
SRR6046534 Other lineage1.1.2 None
ERR4828879 MDR-TB lineage3 None
SRR6397815 Other lineage4.4.1.1 None
SRR6511621 HR-TB None
SRR6046616 Other lineage4.3.1.1 None
ERR323037 HR-TB lineage4 None
ERR3077969 Other La1.3 None
ERR4832002 Pre-XDR-TB lineage2.1 None
ERR485006 HR-TB lineage4.9 None
ERR4872077 Pre-XDR-TB lineage5.2 None
ERR4831617 MDR-TB lineage2.2.1 None
ERR4831616 MDR-TB lineage2.2.1 None
ERR4831618 MDR-TB lineage2.1 None
ERR4831620 MDR-TB lineage2.2.1 None
SRR9970980 Other lineage4.1.2 None
ERR4831621 MDR-TB lineage2.2.1.1 None
ERR4831657 MDR-TB lineage2.2.1 None
ERR11465711 Other lineage4.4.1.1;lineage1.2.2.1 None
ERR11465801 Other lineage4.3.4.1 None
ERR502517 MDR-TB lineage5.1.1 None
SRR8217918 HR-TB None
SRR7496471 Sensitive None
SRR7496523 Other lineage4.7 None
SRR6789624 MDR-TB lineage4.1 None
ERR502510 Sensitive lineage4 None
SRR9971369 MDR-TB lineage4.1.1.3 None
SRR9970979 Sensitive lineage4.8 None
SRR8600107 Other La1.8.1 None
SRR7535082 Sensitive lineage4 None
SRR9970978 Sensitive lineage4.1.2 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR8600232 Other La1.8.1 None
SRR8600288 Other La1.8.1 None
SRR9971041 MDR-TB lineage4.3.3 None
ERR323085 Sensitive lineage4 None
SRR9971080 RR-TB lineage2.2.1 None
SRR9971113 Other lineage2.2.1 None
SRR9971150 RR-TB lineage4.8.1 None
ERR323048 Pre-XDR-TB lineage4.9 None
SRR9971112 Other lineage2.2.1 None
ERR323107 Other lineage4 None
ERR323066 Sensitive lineage4 None
ERR067699 HR-TB lineage4 None
ERR11465189 RR-TB lineage4.9.1 None
ERR1023525 HR-TB lineage4 None
ERR1034634 HR-TB None
ERR1035122 Sensitive None
ERR11466044 Other lineage4.1.1.3 None
ERR1063855 Other lineage4 None
ERR1063883 Sensitive lineage4 None
ERR1063896 Sensitive None
ERR133825 Sensitive lineage4 None
ERR108471 HR-TB lineage4 None
ERR10796563 Other lineage4.3.3 None
ERR10796626 Other lineage4.1.2 None
ERR10796633 RR-TB lineage4.3.4 None
ERR10796636 Other lineage4.1.2.1 None
ERR11465714 Other lineage4.4.1.1;lineage1.2.2.1 None
ERR137286 Sensitive lineage4 None
ERR3273109 MDR-TB lineage4 None
ERR323115 Sensitive lineage4 None
ERR11465802 Other lineage4.3.4.1;La1.7 None
ERR2513082 Other lineage4.1.2.1 gb
ERR3283040 HR-TB None
ERR3283030 HR-TB lineage4.9 None
ERR3283032 HR-TB None
ERR4586795 Other La1.8.1 None
ERR3797015 HR-TB None
ERR3797019 Other La1.8.1 None
ERR3797080 HR-TB lineage4.9 None
ERR4024991 Other None
ERR4188247 HR-TB None
ERR473367 Sensitive lineage4.9 None
ERR4596910 Sensitive lineage4 None
ERR473303 Sensitive lineage4.9 None
ERR473323 HR-TB lineage4.9 None
ERR473334 HR-TB lineage4.9 None
ERR4769516 Other La1.3 None
ERR4769406 Other lineage4.9 None
ERR4769408 Other La1.3 None
ERR4769436 Other La1.3 None
ERR4769444 HR-TB lineage4.9 None
ERR4769506 Sensitive La1.3 None
ERR4769410 Other lineage4;La1.3 None
ERR4769442 HR-TB lineage4 None
ERR4769552 Other La1.3 None
ERR4769514 Other La1.3 None
ERR4769548 Other lineage4.9 None
ERR4769550 Other lineage4.9;La1.3 None
ERR4769555 Other La1.3 None
ERR4796254 Sensitive lineage4 None
ERR4796577 MDR-TB None
ERR4796472 Pre-XDR-TB lineage2.2.1 None
ERR4796929 Sensitive lineage4 None
ERR2514801 Other lineage1.1.3.2 gb
ERR4798099 Other None
ERR4797184 Sensitive lineage4 None
ERR4797193 HR-TB lineage1.1.2 None
ERR4797264 Sensitive None
ERR4797474 Other None
ERR4808964 RR-TB lineage2.2.1 None
ERR4799378 Sensitive lineage4 None
ERR4811035 Pre-XDR-TB lineage4.5;lineage2.2.1 None
ERR5917972 MDR-TB lineage4.4.1.1 za
ERR4809333 Pre-XDR-TB lineage2.2.2 None
ERR6358979 Other None
ERR6358951 HR-TB lineage4 None
ERR6866125 Sensitive lineage4.1.2.1 None
ERR6359066 HR-TB lineage4 None
ERR6359070 Other lineage4.9 None
ERR6359069 Other lineage4.9 None
ERR6359074 HR-TB lineage4.9 None
ERR6866022 Other None
ERR6866547 Sensitive lineage4 None
ERR6866410 Sensitive None
ERR6866639 Other None
ERR736835 HR-TB None
ERR736831 HR-TB lineage4.9 None
ERR736837 Other lineage4.9 None
ERR736834 Sensitive lineage4 None
ERR751326 Sensitive lineage4 None
ERR736848 HR-TB None
ERR736856 HR-TB lineage4 None
ERR736872 Sensitive lineage4 None
ERR2124083 HR-TB lineage4.6.1.2 None
ERR9119483 Pre-XDR-TB lineage5.2 None
ERR9117760 HR-TB lineage4.3 None
ERR8479578 Sensitive lineage1.1.3.1 None
ERR9117676 Other lineage4.2.2.2 None
ERR9786705 Sensitive lineage4.1.2.1 None
ERR9285921 Sensitive lineage3 None
ERR970413 MDR-TB lineage2.2.1 None
ERR9786076 Sensitive lineage3 None
SRR10315551 Sensitive lineage2.2.1 None
ERR9787256 Other lineage6.1.3 None
SRR10315484 MDR-TB lineage2.2.1 None
ERR9787336 Other lineage6 None
ERR9787362 Sensitive lineage6 None
SRR10315751 MDR-TB lineage4.8 None
SRR10315567 Other lineage2.2.1 None
SRR10808668 Sensitive lineage2.2.1 None
SRR10808399 Sensitive lineage4 None
SRR1172807 Sensitive lineage4.9 None
SRR10808805 Sensitive None
SRR1158918 Sensitive lineage4 None
SRR10809074 Sensitive lineage4 None
SRR10869071 MDR-TB lineage2.2.1 None
SRR11349145 Pre-XDR-TB lineage4.4.1.1.1 None
SRR1172717 Other lineage4.9 None
SRR1172885 HR-TB lineage4.9 None
SRR1173421 RR-TB lineage4.9 None
SRR1173139 Sensitive lineage4.9 None
SRR1173777 Other lineage4 None
SRR1173568 Other lineage4.9 None
SRR1173833 Other lineage4.9 None
SRR1180148 Sensitive lineage4.9 None
SRR1175052 HR-TB lineage4.9 None
SRR1175506 Sensitive lineage4.9 None
SRR1175487 Sensitive lineage4.9 None
SRR1175512 Sensitive lineage4.9 None
SRR1175513 Other lineage4.9 None
SRR1180312 Sensitive lineage4.9 None
SRR1180250 Other lineage4.9 None
SRR1180300 Sensitive lineage4.9 None
SRR1180413 Sensitive lineage4.9 None
SRR1180319 Sensitive lineage4.9 None
SRR1180375 Sensitive lineage4.9 None
SRR1180399 Sensitive lineage4.9 None
SRR1180345 Other lineage4.9 None
SRR1180355 Sensitive lineage4.9 None
SRR1180391 Sensitive lineage4.9 None
SRR1180406 Sensitive lineage4.9 None
SRR1180410 Sensitive lineage4.9;lineage2.2 None
SRR1180420 Sensitive lineage4.9 None
SRR1180444 Sensitive lineage4.9 None
SRR1180977 Sensitive lineage4.9 None
SRR1181214 Other lineage4.9 None
SRR1180996 HR-TB lineage4 None
SRR1181283 Sensitive lineage4.9 None
SRR1181237 Sensitive lineage2.2 None
SRR1181351 Sensitive lineage4.9 None
SRR1181349 Sensitive lineage4.4.1.1.1 None
SRR1181325 Sensitive lineage4.9 None
SRR1181390 Sensitive lineage2 None
SRR1181368 Other lineage4.9 None
SRR1183054 Sensitive lineage4.9 None
SRR1181402 Sensitive lineage4.9 None
SRR1183965 Sensitive lineage4.9 None
SRR1184021 Sensitive lineage4.9 None
SRR13180205 Sensitive lineage4.1.2.1 None
SRR11972369 Pre-XDR-TB lineage2.2.1 None
SRR16278274 Other La1.4 None
SRR14801749 Sensitive None
SRR14802079 MDR-TB lineage4.2.1 None
SRR13180363 Sensitive lineage4.1.2.1 None
SRR1791747 Other La1.8.1 None
SRR18002903 Pre-XDR-TB lineage2.2.1 None
SRR18002881 Pre-XDR-TB lineage2.2.1 None
SRR18002933 Other lineage2.2.1 None
SRR18002941 RR-TB lineage2.2.1 None
SRR18002963 Other lineage2.2.1 None
SRR18002947 MDR-TB lineage2.2.1 None
SRR18003027 Other lineage2.2.1 None
SRR18002967 Pre-XDR-TB lineage2.2.1 None
SRR18003023 Other lineage2.2.1 None
SRR19295647 Sensitive lineage4.9 None
SRR18572455 Sensitive lineage4.9 None
SRR18909918 Other lineage2.2.1.1 None
SRR18912069 Other lineage4.1.2.1 None
SRR20969542 Other lineage4.4.2 None
SRR19303796 Other lineage4.3.3 None
SRR19303985 Other lineage4.8 None
SRR19304094 Other lineage6 None
SRR20632814 Sensitive lineage4 None
SRR19304115 Other lineage4.1.2.1 None
ERR4815193 MDR-TB lineage4.8 None
SRR21677886 Sensitive lineage4.9 None
SRR22250026 Sensitive lineage3 None
SAMEA3501065 RR-TB lineage4.8 None
ERR1035296 HR-TB lineage4.9 br
ERR1035299 MDR-TB lineage4.1.2.1 br
ERR1035297 MDR-TB lineage4.3.4.1 br
ERR1035317 RR-TB lineage4.3.4.2 br
ERR1035315 Pre-XDR-TB lineage4.3.4.1 br
ERR176781 Sensitive lineage1.1.3.2 None
ERR1035294 MDR-TB lineage4.1.2.1 br
ERR1035300 HR-TB lineage4.1.2.1 br
ERR4814623 Other lineage4.8 None
ERR1035318 Pre-XDR-TB lineage4.3.4.1 br
SRR3675488 HR-TB None
ERR4815697 Sensitive lineage4.1.2.1 None
ERR4814312 Other lineage4 None
ERR4815310 Other None
ERR1035316 MDR-TB lineage4.3.2 br
ERR1035295 MDR-TB lineage4.1.2.1 br
ERR702405 Sensitive lineage2.1 None
ERR4815471 Other lineage4.9 None
SRR3675222 Other None
ERR4819579 HR-TB lineage4.3.3 None
ERR4815452 Other lineage4.3.3 None
SRR3675230 RR-TB lineage3 None
ERR176518 Sensitive lineage4.3.4.2.1 None
ERR4814763 Other lineage2.2.1 None
SRR3675246 Sensitive lineage4 None
ERR4814874 MDR-TB lineage1.1.2 None
ERR4815517 Other lineage1.2.2.2 None
ERR4814952 Sensitive lineage3 None
ERR4814930 Other lineage4.4.1.1 None
ERR4815792 Other lineage4.1.2.1 None
ERR4815550 Other lineage4 None
ERR2229810 Other lineage4.8 None
ERR4815572 Other lineage4.1.2.1 None
SAMEA3501015 Other lineage4.8 None
ERR2229540 Other lineage4.8 None
SRR3675509 Other lineage4.9 None
ERR4816964 Other lineage4.9 None
ERR4816087 Other lineage4.1.2.1 None
ERR4816464 Other lineage3 None
ERR4816270 Other lineage4.1.2.1 None
SRR3675565 Other lineage3 None
ERR2229147 Other lineage4.8 None
ERR4817046 Other lineage3 None
ERR4816243 Sensitive lineage3 None
ERR4817060 RR-TB None
ERR4816470 Other lineage3 None
ERR4817134 HR-TB lineage2.2.1 None
ERR4817131 Pre-XDR-TB None
ERR2229204 Other lineage4.8 None
ERR4817175 Other lineage4.8 None
SRR5341384 Sensitive lineage4.9 None
ERR216965 HR-TB lineage4.9 None
ERR4816610 RR-TB lineage4.3.3 None
ERR4816692 Other lineage4.1.2.1 None
ERR4817189 Other lineage4.7 None
ERR4816702 RR-TB lineage4.6.2.2 None
ERR4817276 Other lineage2.2.1 None
ERR2229436 Other lineage4.8 None
ERR4816856 Other lineage4.1.2.1 None
ERR2228900 RR-TB lineage4.8 None
ERR2228838 RR-TB lineage4.8 None
ERR2228899 RR-TB lineage4.8 None
ERR4816866 Other lineage2.2.1 None
ERR2228890 Other lineage4 None
ERR2228910 Other lineage4.8 None
ERR2513589 Other lineage3.1.3 None
ERR4818710 Sensitive lineage4.9 None
ERR2513382 RR-TB lineage4.1.1.3 None
ERR2512423 Other lineage4.1.1.3 None
ERR4818050 Other lineage4.6.2.2 None
ERR2513121 Sensitive lineage3.1.3 None
ERR4819011 Other lineage3.1.2.1 None
SAMEA3501063 RR-TB lineage4.8 None
ERR4818110 Sensitive lineage4.9 None
ERR245675 Sensitive lineage1.1.2 None
ERR4818851 RR-TB lineage4.4.1.1 None
ERR4818126 RR-TB lineage1 None
ERR4818128 RR-TB lineage4.1.2.1 None
ERR245794 HR-TB lineage4.3.4.2.1 None
ERR4818536 Other lineage4.9 None
ERR4819051 Other lineage4 None
ERR4818440 Other lineage6.3.1 None
ERR4818548 Other lineage4.3.3 None