Rv0701 - c.-125G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
95 Sensitive
2 RR-TB
24 HR-TB
3 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
37 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 61 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.3.3 | 48 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| La1.6;La3;lineage4.9 | 2 |
| lineage4.4.1.2 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.6.2.2 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| La3;lineage4.9 | 7 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage2.2.1 | 6 |
| lineage4.3.2.1 | 1 |
| lineage4.8 | 2 |
| lineage4.1.2 | 2 |
| La1.7;lineage4.9 | 2 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La3;lineage4 | 1 |
| 2 | |
| lineage2.2.1.2 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4 | 1 |
| La1;lineage4.9 | 2 |
| lineage1.1.2 | 1 |
| lineage4.8;lineage4.9 | 2 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage6.1.3 | 1 |
| lineage1.1.3.1 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 164 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR137286 | Other | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR323066 | Sensitive | lineage4.9 | None | SRR14520148 | Sensitive | lineage4.3.3 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | SRR1159378 | Other | lineage4.9 | None | SRR14519647 | Sensitive | lineage4.3.3 | None | SRR14520046 | Sensitive | lineage4.3.3 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR14519979 | Sensitive | lineage4.3.3 | None | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | SRR14519980 | Sensitive | lineage4.3.3 | None | SRR14519931 | Sensitive | lineage4.3.3 | None | SRR14519745 | Sensitive | lineage4.3.3 | None | SRR14519793 | Sensitive | lineage4.3.3 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | SRR14519770 | Sensitive | lineage4.3.3 | None | SRR5341384 | HR-TB | lineage4.9 | None | SRR14519778 | Sensitive | lineage4.3.3 | None | SRR14519982 | Sensitive | lineage4.3.3 | None | SRR14519975 | Sensitive | lineage4.3.3 | None | SRR14520088 | Sensitive | lineage4.3.3 | None | SRR16156817 | Other | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR5341366 | Sensitive | lineage4.9 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR14519800 | Sensitive | lineage4.3.3 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR14519646 | Sensitive | lineage4.3.3 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR14520093 | Sensitive | lineage4.3.3 | None | SRR14519777 | Sensitive | lineage4.3.3 | None | SRR1173777 | Sensitive | lineage4.9 | None | SRR29017081 | Sensitive | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR14519784 | Sensitive | lineage4.3.3 | None | SRR14519946 | Sensitive | lineage4.3.3 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | SRR14519879 | Sensitive | lineage4.3.3 | None | SRR14519792 | Sensitive | lineage4.3.3 | None | SRR14519686 | Sensitive | lineage4.3.3 | None | SRR7535082 | Sensitive | lineage4.9 | None | SRR14520087 | Sensitive | lineage4.3.3 | None | SRR14519927 | Sensitive | lineage4.3.3 | None | SRR14520069 | Sensitive | lineage4.3.3 | None | SRR14519740 | Sensitive | lineage4.3.3 | None | SRR14519798 | Sensitive | lineage4.3.3 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR1063896 | Sensitive | None | SRR14519764 | Sensitive | lineage4.3.3 | None | ERR502511 | Sensitive | lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR6358991 | HR-TB | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR14519966 | Sensitive | lineage4.3.3 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR14520005 | Sensitive | lineage4.3.3 | None | ERR3273109 | HR-TB | lineage4 | None | SRR14519964 | Sensitive | lineage4.3.3 | None | SRR14519730 | Sensitive | lineage4.3.3 | None | ERR4799378 | Sensitive | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR14519801 | Sensitive | lineage4.3.3 | None | SRR14519978 | Sensitive | lineage4.3.3 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR3675246 | Other | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR14520047 | Sensitive | lineage4.3.3 | None | SRR14519775 | Sensitive | lineage4.3.3 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | SRR5341298 | Sensitive | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR14519802 | Sensitive | lineage4.3.3 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR1180996 | Sensitive | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR14519950 | Sensitive | lineage4.3.3 | None | SRR1158918 | Sensitive | lineage4.9 | None | SRR14519872 | Sensitive | lineage4.3.3 | None | SRR14519662 | Sensitive | lineage4.3.3 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR13285068 | Sensitive | lineage4.9 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR108125 | RR-TB | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | SRR14520056 | Sensitive | lineage4.3.3 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR14519912 | Sensitive | lineage4.3.3 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | SRR5341303 | Sensitive | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR14519913 | Sensitive | lineage4.3.3 | None | SRR5341467 | Other | lineage4.9 | None | SRR14519954 | Sensitive | lineage4.3.3 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR14519768 | Sensitive | lineage4.3.3 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR14519962 | Sensitive | lineage4.3.3 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR1193733 | Sensitive | lineage4.3.3 | au | ERR2693252 | Sensitive | lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None |
|---|
