lineage | Count |
---|---|
lineage4.8.1 | 1 |
lineage2.2.1 | 9 |
lineage4 | 37 |
lineage2.2 | 3 |
31 | |
La1.8.1 | 3 |
lineage4.9 | 55 |
lineage3 | 2 |
lineage4;lineage3.1 | 1 |
lineage4.9;La1.3 | 2 |
La1.3 | 1 |
lineage2.2.2 | 1 |
lineage4.1.2.1 | 1 |
lineage6.1.3 | 1 |
lineage4.8 | 3 |
lineage4.9;lineage2.2 | 1 |
lineage4.4.1.1.1 | 1 |
lineage2 | 1 |
lineage4.2.1 | 1 |
lineage4;lineage2 | 1 |
lineage1.1.1 | 1 |
lineage4.7 | 1 |
lineage4.3.4.1 | 1 |
lineage4.1.2 | 1 |
lineage4.3.2.1 | 1 |
spoligotype | Count |
---|---|
None | 161 |
ID | Drug resistance | Lineage | Country iso2 | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR323066 | Sensitive | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR067712 | HR-TB | lineage4 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1034634 | HR-TB | None | ERR1035122 | Sensitive | None | ERR1063896 | Sensitive | None | ERR1063857 | HR-TB | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR3283024 | Other | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | None | ERR137286 | Sensitive | lineage4 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR3797024 | Other | lineage4.9 | None | ERR3797015 | HR-TB | None | ERR3797014 | Other | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3797044 | Other | None | ERR3797017 | Other | None | ERR4596902 | HR-TB | lineage3 | None | ERR3797061 | Other | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR4024991 | Other | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4187652 | Other | lineage4.9 | None | ERR405209 | Sensitive | lineage4 | None | ERR4188247 | HR-TB | None | ERR4596910 | Sensitive | lineage4 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769521 | HR-TB | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769553 | RR-TB | lineage4.9 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4769552 | Other | La1.3 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4796577 | MDR-TB | None | ERR4796254 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4798099 | Other | None | ERR4799378 | Sensitive | lineage4 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR6359069 | Other | lineage4.9 | None | ERR6359070 | Other | lineage4.9 | None | ERR6866639 | Other | None | ERR6866022 | Other | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR736848 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR6866807 | HR-TB | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR751326 | Sensitive | lineage4 | None | SRR1158918 | Sensitive | lineage4 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR11462861 | Other | La1.8.1 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1172717 | Other | lineage4.9 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1173777 | Other | lineage4 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR11823427 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR16156832 | RR-TB | None | SRR20632814 | Sensitive | lineage4 | None | SRR21677886 | Sensitive | lineage4.9 | None | ERR4814639 | HR-TB | lineage4 | None | ERR4815471 | Other | lineage4.9 | None | SRR3675234 | Other | None | ERR4817069 | RR-TB | None | SRR3675246 | Sensitive | lineage4 | None | ERR4815550 | Other | lineage4 | None | ERR4816964 | Other | lineage4.9 | None | ERR216965 | HR-TB | lineage4.9 | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR4819462 | Other | lineage4 | None | ERR4816762 | Other | lineage4;lineage2 | None | SRR5341387 | Other | lineage4 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR4819357 | Other | lineage4.9 | None | SRR5341425 | Other | lineage4 | None | ERR4815815 | Sensitive | lineage4 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR4818561 | HR-TB | lineage4 | None | SRR5341453 | Sensitive | None | SRR5341308 | Sensitive | lineage4 | None | ERR4819546 | HR-TB | lineage3 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341467 | Other | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | ERR4819933 | Other | lineage4.9 | None | SRR5341366 | Sensitive | lineage4 | None | ERR2693230 | Other | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR2693231 | Other | None | SRR5341469 | Other | lineage4 | None | SRR6044890 | Other | lineage4.9 | None | ERR2693254 | Other | None | ERR2693257 | Other | None | ERR2693232 | Other | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6044952 | RR-TB | lineage4.9 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6511621 | HR-TB | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR5311077 | RR-TB | La1.8.1 | None | SRR7496523 | Other | lineage4.7 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR7496471 | Sensitive | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None |
---|