Rv3457c - c.777G>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
65 Sensitive
4 RR-TB
26 HR-TB
13 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
35 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8 | 3 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La1.8.1 | 4 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.9 | 84 |
| lineage6.1.3 | 1 |
| lineage2.2.1 | 8 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| lineage1.1.3.1 | 1 |
| lineage1.1.2 | 2 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.2 | 1 |
| lineage4.8;lineage4.9 | 2 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage4.6.4;lineage4.9 | 2 |
| lineage1.1.1 | 1 |
| 1 | |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage3 | 4 |
| lineage4 | 2 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage4.3.3 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.4.1.1.1 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.1.2 | 1 |
| lineage2.2.1.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| lineage2.1 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| La2;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 145 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR10315751 | MDR-TB | lineage4.8 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR11462861 | Other | La1.8.1 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR3675390 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR3675586 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR1063896 | Sensitive | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR1159378 | Other | lineage4.9 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR323107 | Sensitive | lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR2513259 | Other | lineage3 | None | ERR4816470 | HR-TB | lineage3 | None | ERR124636 | Sensitive | lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR4799378 | Sensitive | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR6358951 | Sensitive | lineage4.9 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR323062 | Sensitive | lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR502511 | Sensitive | lineage4.9 | None | SRR5341455 | Sensitive | lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | ERR9786076 | Sensitive | lineage3 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR6832787 | Sensitive | lineage2.2.1 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR4831618 | MDR-TB | lineage2.1 | None | ERR3439432 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR28351347 | Other | lineage3 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR3797019 | Other | La1.8.1 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4797193 | HR-TB | lineage1.1.2 | None |
|---|
