EBG00000313339 - n.3068C>T
Drug resistance types
52 Sensitive
4 RR-TB
73 HR-TB
13 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
46 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1 | 2 |
| lineage4.9;lineage4.6.3 | 1 |
| 68 | |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage4 | 43 |
| lineage1.2.1.1 | 1 |
| lineage2.1 | 1 |
| lineage2.2.1 | 15 |
| lineage4.1.1.3 | 1 |
| lineage4.9 | 13 |
| lineage3.1.3 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.1.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.9;lineage2.1 | 1 |
| lineage3 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.1.2.1 | 6 |
| lineage1.1 | 1 |
| lineage4.6.4 | 2 |
| lineage3.1 | 2 |
| La2 | 1 |
| lineage4.1.2 | 2 |
| lineage4.8 | 1 |
| lineage4.3.2.1 | 1 |
| La1.8.1 | 4 |
| lineage1.1.2 | 1 |
| lineage3.1.2 | 1 |
| lineage4.3.3 | 2 |
| lineage4.3.2 | 1 |
| lineage1.1.3.1 | 1 |
| lineage6.1.3 | 1 |
| lineage2.2.1.1 | 3 |
| lineage2.2.2 | 2 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.5 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.2.1 | 1 |
| lineage1.2.1.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 191 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675464 | HR-TB | lineage4.1 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR6325445 | HR-TB | None | SRR3675488 | HR-TB | None | ERR1035239 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3675482 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675486 | HR-TB | None | SRR3675222 | Other | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR702405 | Sensitive | lineage2.1 | None | ERR4814829 | Sensitive | lineage2.2.1 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR176740 | HR-TB | None | SRR3675558 | HR-TB | None | SRR3675571 | HR-TB | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR2229143 | Other | lineage4.1.1 | None | ERR4818252 | Other | lineage4.1.1.2 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341453 | Sensitive | None | SRR5341387 | Other | lineage4 | None | SRR5341396 | Other | lineage4 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341425 | Other | lineage4 | None | SRR5341456 | Other | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341467 | Other | lineage4 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR5341469 | Other | lineage4 | None | SRR5341470 | HR-TB | None | ERR4821053 | Other | lineage3 | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR6045519 | HR-TB | None | ERR278594 | HR-TB | None | ERR2693239 | HR-TB | None | ERR4821655 | Sensitive | lineage4 | None | SRR6045158 | Other | lineage4.9 | None | SRR6044925 | Sensitive | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6045892 | Sensitive | None | ERR4798923 | Sensitive | lineage1.2.2.2 | in | SRR6046259 | Sensitive | lineage4.9 | None | SRR6325442 | HR-TB | None | SRR6046299 | HR-TB | None | SRR6046397 | Other | None | SRR6046514 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6325448 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR3077978 | Other | lineage1.1 | None | SRR6511621 | HR-TB | None | ERR4872102 | MDR-TB | lineage4.6.4 | None | ERR4831117 | HR-TB | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR294248 | HR-TB | None | ERR294266 | HR-TB | None | ERR323036 | HR-TB | None | ERR5311090 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR323038 | HR-TB | None | ERR323053 | HR-TB | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9970979 | Sensitive | lineage4.8 | None | ERR323107 | Other | lineage4 | None | ERR323041 | HR-TB | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR323039 | HR-TB | None | ERR323055 | HR-TB | None | ERR323063 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR1063883 | Sensitive | lineage4 | None | ERR323066 | Sensitive | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1035122 | Sensitive | None | ERR137286 | Sensitive | lineage4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR1063896 | Sensitive | None | ERR133825 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR323115 | Sensitive | lineage4 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797082 | Other | lineage4.9 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283017 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797060 | Other | La1.8.1 | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797081 | Sensitive | lineage4 | None | ERR4798099 | Other | None | ERR4188247 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4024991 | Other | None | ERR4796254 | Sensitive | lineage4 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4797474 | Other | None | ERR4799378 | Sensitive | lineage4 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR5908228 | Other | lineage4.3.3 | None | ERR4811493 | HR-TB | None | ERR6358979 | Other | None | ERR6358837 | HR-TB | None | ERR6866410 | Sensitive | None | ERR6866022 | Other | None | ERR6866547 | Sensitive | lineage4 | None | ERR736834 | Sensitive | lineage4 | None | ERR6866639 | Other | None | ERR736848 | HR-TB | None | ERR736872 | Sensitive | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR736865 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR8976043 | HR-TB | None | ERR9119508 | MDR-TB | lineage4.6.4 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR970441 | RR-TB | lineage2.2.1.1 | None | ERR970413 | MDR-TB | lineage2.2.1 | None | ERR970445 | MDR-TB | lineage2.2.1 | None | ERR987722 | HR-TB | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR10808399 | Sensitive | lineage4 | None | SRR10808805 | Sensitive | None | SRR1158918 | Sensitive | lineage4 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1172310 | HR-TB | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173568 | Other | lineage4.9 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1173777 | Other | lineage4 | None | SRR1174897 | HR-TB | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR13861386 | HR-TB | lineage4.9 | None | SRR13861575 | Other | lineage4.9 | None | SRR14801749 | Sensitive | None | SRR1640750 | HR-TB | None | SRR15316160 | Sensitive | lineage2.2.1.2 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR1791747 | Other | La1.8.1 | None | SRR1791696 | Other | La1.8.1 | None |
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