EBG00000313339 - n.3017T>C
Drug resistance types
49 Sensitive
7 RR-TB
105 HR-TB
27 MDR-TB
7 Pre-XDR-TB
0 XDR-TB
121 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 157 |
| La3;lineage4 | 1 |
| La1.7;lineage4.9 | 8 |
| lineage3.1 | 1 |
| 3 | |
| lineage4.6.1.1 | 2 |
| La1;lineage4.9 | 3 |
| lineage2.2.1.2 | 3 |
| La1.2 | 2 |
| lineage2.2.1 | 15 |
| lineage4.1.1.2 | 1 |
| lineage2.2.1.1 | 27 |
| lineage3.1.3 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.3.3 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| La1.8.1 | 5 |
| lineage2.2 | 4 |
| lineage4.3.4.2.1 | 2 |
| lineage5.2 | 2 |
| lineage2.1;lineage4.9 | 2 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.5 | 2 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.1.2.1 | 3 |
| La3;lineage4.9 | 9 |
| lineage2.2.1.2;lineage7 | 1 |
| lineage4.9;lineage7 | 3 |
| lineage4.4.1.1 | 1 |
| lineage1.1.2 | 3 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage4.2.1 | 2 |
| lineage4.1;lineage4.9 | 1 |
| lineage6.1.2 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage4.4.2 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4 | 2 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.3.4 | 1 |
| lineage4.8;lineage4.9 | 2 |
| La1.7.1 | 1 |
| lineage4.1.2 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.8 | 1 |
| lineage6.1.3 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La3;lineage4.3.4 | 1 |
| lineage4.8.1 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La1;lineage4.1.2 | 1 |
| La1.2.BCG | 2 |
| lineage4.4.1.2 | 1 |
| lineage3 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| La2;lineage2.2 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| La1.2;La1.8.1 | 1 |
| lineage1;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| M.canetti;lineage1 | 1 |
| lineage6 | 1 |
| lineage4.9;lineage9 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage3;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 316 |
Geographic prevalence
Country level data for this variant is available for 16 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR736856 | HR-TB | lineage4.9 | None | ERR502511 | HR-TB | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR971389 | Other | lineage4.9 | None | ERR181824 | MDR-TB | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | SRR28351442 | HR-TB | lineage3.1 | None | SRR12708416 | Sensitive | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR369162 | Other | lineage4.9 | None | SRR1173568 | Sensitive | lineage4.9 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR4797264 | HR-TB | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR779852 | HR-TB | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | ERR4769421 | Other | La1.2 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4818252 | HR-TB | lineage4.1.1.2 | None | SRR26937134 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4831883 | MDR-TB | lineage2.2.1.1 | vn | DRR185083 | Other | lineage2.2.1.1 | vn | ERR369157 | Sensitive | lineage4.9 | None | SRR6046492 | Other | lineage4.9 | None | ERR970441 | RR-TB | lineage2.2.1.1 | None | ERR3797079 | Sensitive | lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR6046878 | Other | lineage4.9 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR26399326 | Other | lineage2.2.1.1 | None | SRR1791747 | Other | La1.8.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR387051 | RR-TB | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR736848 | Other | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR9119483 | Pre-XDR-TB | lineage5.2 | None | SRR3675495 | RR-TB | lineage2.1;lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR3797019 | Other | La1.8.1 | None | SRR7236177 | Other | La1.8.1 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR926160 | Other | lineage4.9 | None | ERR4811031 | Other | lineage4.5 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | SRR5065311 | Other | lineage2.2.1.1 | vn | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR6511621 | HR-TB | lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | ERR349264 | Other | lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR323062 | HR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | SRR3675585 | HR-TB | lineage4.9 | None | SRR5067338 | Other | lineage2.2.1.1 | vn | ERR4799513 | HR-TB | lineage2.2 | None | ERR751326 | Other | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | ERR3445502 | HR-TB | lineage4.9;lineage7 | None | SRR5431730 | Other | La1.8.1 | None | ERR4769474 | HR-TB | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR323107 | HR-TB | lineage4.9 | None | ERR4796254 | Other | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR26399703 | HR-TB | lineage2.2.1.1 | None | SRR5341432 | Other | La1.7;lineage4.9;lineage7 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR3797081 | Sensitive | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | ERR363453 | Other | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | SRR5067441 | Other | lineage2.2.1.1 | vn | ERR4797184 | HR-TB | lineage4.9 | None | SRR1158918 | Other | lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR4798431 | Other | lineage4.1;lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | ERR4872077 | Pre-XDR-TB | lineage5.2 | None | ERR970413 | MDR-TB | lineage2.2.1 | None | ERR9787030 | RR-TB | lineage6.1.2 | None | SRR6046253 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | DRR188519 | Other | lineage4.4.2 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | SRR6045053 | Other | lineage4 | None | SRR8692887 | Other | None | ERR1063896 | HR-TB | None | ERR137286 | Other | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR752229 | Other | lineage4.5 | None | ERR6358979 | HR-TB | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR4797474 | Other | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR3675555 | MDR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR5341330 | Other | lineage4.9 | None | ERR4024991 | HR-TB | lineage4.8;lineage4.9 | None | ERR4769427 | Other | La1.2 | None | ERR2693252 | HR-TB | lineage4.9 | None | SRR1159378 | Other | lineage4.9 | None | SRR6045217 | Other | lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR5067302 | HR-TB | lineage2.2.1.1 | vn | ERR4831910 | MDR-TB | lineage2.2.1.1 | None | ERR6866410 | HR-TB | lineage4.9 | None | SRR7535082 | Other | lineage4.9 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR4830220 | HR-TB | lineage2.2.1.1 | vn | SRR5065249 | HR-TB | lineage2.2.1.1 | vn | SRR5341400 | Sensitive | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR3283031 | Other | La3;lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR5341300 | HR-TB | lineage4.9 | None | SRR5341313 | Other | La1.7;lineage4.9;lineage7 | None | ERR4799025 | Other | lineage4.8 | None | ERR9787256 | Other | lineage6.1.3 | None | SRR14782054 | Other | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR4821655 | HR-TB | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR5341310 | Other | lineage1.1.2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662694 | Other | lineage4.9 | None | ERR4831862 | MDR-TB | lineage2.2.1.1 | vn | ERR161039 | HR-TB | La3;lineage4.3.4 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | ERR1035122 | HR-TB | lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR9119264 | HR-TB | lineage2.2.1.1 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | SRR3675235 | HR-TB | lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | SRR14801759 | MDR-TB | La1.7;lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR9613550 | HR-TB | lineage4.1.2.1 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR5067368 | HR-TB | lineage2.2.1.1 | vn | SRR3675541 | Sensitive | lineage4.9 | None | SRR9971112 | HR-TB | lineage2.2.1 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR3283014 | Other | La3;lineage4.9 | None | ERR10969110 | Other | lineage2.2.1.1 | None | SRR10809074 | HR-TB | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | SRR6044875 | Other | lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR5341293 | Sensitive | lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR5341455 | Sensitive | lineage4.9 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR363447 | Other | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | SRR1915485 | Other | La1.2.BCG | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR736834 | HR-TB | lineage4.9 | None | ERR6866022 | HR-TB | lineage4.8;lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR926155 | Other | lineage4.9 | None | ERR3283021 | MDR-TB | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR363479 | Other | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | ERR161037 | HR-TB | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | SRR6045795 | Other | lineage2.2.1 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR349300 | Other | lineage4.9 | None | ERR6866807 | RR-TB | lineage4.9 | None | SRR5067699 | Other | lineage2.2.1.1 | vn | ERR4810624 | MDR-TB | lineage2.2 | None | ERR373945 | Other | lineage4.9 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR3675539 | MDR-TB | lineage4.9;lineage7 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | ERR4798099 | HR-TB | lineage4.9 | None | SRR5341298 | Other | lineage4.9 | None | SRR10808668 | Other | lineage2.2.1 | None | ERR702405 | HR-TB | lineage4.9 | None | ERR4830378 | Other | lineage2.2.1.1 | vn | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR6866639 | HR-TB | lineage4.9 | None | ERR926165 | Other | lineage4.9 | None | ERR4832018 | HR-TB | lineage2.2.1.1 | vn | ERR3797048 | Other | La3;lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR926156 | Other | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR5067612 | Other | lineage2.2.1.1 | vn | ERR926157 | Other | lineage4.9 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | SRR5067366 | Other | lineage2.2.1.1 | vn | ERR369163 | Other | lineage4.9 | None | SRR6045548 | Other | lineage4.9 | None | ERR9119669 | MDR-TB | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR067699 | HR-TB | La1;lineage2;lineage4.9 | None | SRR5067543 | MDR-TB | lineage2.2.1.1 | vn | ERR373946 | Other | lineage4.9 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR323066 | HR-TB | lineage4.9 | None | ERR124636 | HR-TB | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR5341308 | HR-TB | lineage4.9 | None | ERR3797063 | Other | La3;lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | SRR3675582 | Other | lineage4.9 | None | ERR4811030 | Other | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR9119232 | Other | lineage2.2.1.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR1180996 | Other | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR2446566 | Other | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | SRR10808490 | Sensitive | lineage2.2.1.1 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR926169 | Sensitive | lineage4.9 | None | ERR9787362 | Sensitive | lineage6 | None | ERR3797073 | Other | La1.8.1 | None | SRR10808399 | Sensitive | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | SRR19295647 | HR-TB | lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR6046259 | Sensitive | lineage4.9 | None | ERR11043089 | HR-TB | lineage2.2.1.1 | None | SRR5341467 | Other | lineage4.9 | None | SRR1173777 | Sensitive | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | ERR4769450 | Other | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | ERR502510 | HR-TB | lineage4.9 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR970445 | MDR-TB | lineage2.2.1 | None | SRR11662690 | HR-TB | lineage4.9 | None |
|---|
