EBG00000313339 - n.3017T>C


Drug resistance types
49 Sensitive 7 RR-TB 105 HR-TB 27 MDR-TB 7 Pre-XDR-TB 0 XDR-TB 121 Other
lineage Counts
lineage Count
lineage4.9 157
lineage3 1
La1.2.BCG 2
lineage2.2.1 15
La3;lineage4 1
lineage4.4.2 1
M.canetti;lineage4.9;lineage9 1
3
lineage3.1 1
La1.7;lineage4.9;lineage6 1
lineage4.5 2
La1;lineage4.9 3
lineage4.2.1.1;lineage4.3.3 1
lineage2.1;lineage4.9;lineage7 1
lineage4.8;lineage4.9 2
lineage4.9;lineage7 3
La1.2 2
lineage2.2.1.1 27
La2;lineage2.2 1
La3;M.canetti;lineage4.9 1
La1.8.1 5
lineage2.2 4
La1.7;lineage4.9;lineage7 3
lineage4.8 1
lineage4.9;lineage6.1.3 1
lineage1.1.2 3
La1.2;La1.8.1 1
lineage4.6.3;lineage4.9 1
lineage4.3.2.1 1
lineage4.8.1 1
lineage4 2
lineage4.4.1.1 1
La3;lineage4.9 9
lineage2.2.1.2 3
La1;lineage4.1.2 1
lineage5.2 2
lineage6.1.2 1
La1.7;lineage4.9 8
lineage3;lineage4.9 1
lineage1.1.3.1 1
La1.7.1 1
lineage4.3.4.2.1 2
La2;lineage4.9 1
La1;lineage2;lineage4.9 1
lineage2.1;lineage4.9 2
La1.7;lineage3.1;lineage4 1
M.canetti;lineage1 1
lineage4.1.1.3 1
lineage4.1.2.1 3
lineage2.2.1.2;lineage7 1
lineage6 1
lineage4.3.1;lineage4.9;lineage6 1
La1.7.1;La1.7.X-unk4;lineage7 1
lineage4.1.1.3;lineage4.9 2
lineage4.6.1.1 2
lineage4.1.1.2 1
lineage3.1.3 1
lineage4.3.4 1
La1.7.X-unk4;lineage4.9 1
lineage2.2.1;lineage4 1
lineage4.1.2 1
lineage4.3.3 1
lineage3.1.2.1 1
lineage4.2.1 2
lineage6.1.3 1
lineage1;lineage4.9 1
La3;lineage4.3.4 1
La1.7.1;La1.7.X-unk4 1
La1.7.1;lineage4.9 1
lineage4.9;lineage9 1
lineage4.1;lineage4.9 1
lineage4.4.1.2 1
La1.7;lineage3;lineage4.9;lineage7 1
spoligotype Counts
spoligotype Count
None 316
Geographic prevalence
Country level data for this variant is available for 16 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR3283021 MDR-TB lineage4.9 None
SRR5341412 Pre-XDR-TB lineage3 None
ERR363479 Other lineage4.9 None
SRR1915487 Other La1.2.BCG None
ERR970445 MDR-TB lineage2.2.1 None
SRR11662690 HR-TB lineage4.9 None
ERR502511 HR-TB lineage4.9 None
ERR3283028 Other La3;lineage4 None
DRR188519 Other lineage4.4.2 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
ERR971389 Other lineage4.9 None
ERR181824 MDR-TB lineage4.9 None
ERR1063896 HR-TB None
SRR28351442 HR-TB lineage3.1 None
ERR137286 Other lineage4.9 None
ERR6866547 Other La1.7;lineage4.9;lineage6 None
ERR752229 Other lineage4.5 None
ERR4819051 Sensitive lineage4.9 None
ERR4769497 Other La1;lineage4.9 None
ERR4797264 HR-TB lineage4.9 None
ERR176651 Other lineage4.9 None
ERR373945 Other lineage4.9 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
SRR3675555 MDR-TB lineage2.1;lineage4.9;lineage7 None
SRR5341330 Other lineage4.9 None
ERR4024991 HR-TB lineage4.8;lineage4.9 None
SRR3675539 MDR-TB lineage4.9;lineage7 None
ERR4769427 Other La1.2 None
SRR5341298 Other lineage4.9 None
SRR10808668 Other lineage2.2.1 None
ERR2693252 HR-TB lineage4.9 None
ERR4830378 Other lineage2.2.1.1 vn
ERR970441 RR-TB lineage2.2.1.1 None
ERR3797079 Sensitive lineage4.9 None
ERR1063839 MDR-TB La2;lineage2.2 None
SRR5535933 Other lineage4.9 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
SRR26399326 Other lineage2.2.1.1 None
SRR1791747 Other La1.8.1 None
SRR20969708 HR-TB lineage2.2 None
ERR6866639 HR-TB lineage4.9 None
ERR926165 Other lineage4.9 None
SRR7535082 Other lineage4.9 None
ERR3797015 HR-TB lineage4.9 None
ERR926156 Other lineage4.9 None
ERR363506 Sensitive lineage4.9 None
ERR926162 Sensitive lineage4.9 None
SRR5067612 Other lineage2.2.1.1 vn
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR5341313 Other La1.7;lineage4.9;lineage7 None
ERR4799025 Other lineage4.8 None
ERR373946 Other lineage4.9 None
ERR4821655 HR-TB lineage4.9 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
SRR5341310 Other lineage1.1.2 None
SRR7240033 Other La1.2;La1.8.1 None
SRR14801749 HR-TB lineage4.9 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
SRR11662694 Other lineage4.9 None
ERR926158 Sensitive lineage4.9 None
ERR4811031 Other lineage4.5 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
ERR349299 Other lineage4.9 None
SRR5065311 Other lineage2.2.1.1 vn
SRR9970981 RR-TB lineage4.3.2.1 None
SRR11342693 MDR-TB lineage4.8.1 None
ERR1035122 HR-TB lineage4.9 None
ERR736875 HR-TB lineage4.9 None
ERR3273109 HR-TB lineage4 None
ERR2446566 Other lineage4.9 None
ERR4769474 HR-TB lineage4.9 None
ERR926159 Sensitive lineage4.9 None
SRR12708398 Sensitive lineage4.4.1.1 None
ERR323107 HR-TB lineage4.9 None
ERR926169 Sensitive lineage4.9 None
SRR26399703 HR-TB lineage2.2.1.1 None
SRR5341432 Other La1.7;lineage4.9;lineage7 None
SRR10808399 Sensitive lineage4.9 None
SRR5067368 HR-TB lineage2.2.1.1 vn
SRR5341453 Other lineage4.9 None
ERR3283014 Other La3;lineage4.9 None
ERR10969110 Other lineage2.2.1.1 None
SRR12416842 HR-TB lineage4.9 None
ERR4831621 MDR-TB lineage2.2.1.1 None
ERR363445 Other lineage4.9 None
SRR6044876 Sensitive lineage4.9 None
ERR3797047 MDR-TB lineage4.9 None
SRR5341293 Sensitive lineage4.9 None
ERR473332 Other lineage4.9 None
SRR1172796 Sensitive lineage2.2.1.2 None
SRR5067441 Other lineage2.2.1.1 vn
SRR9970978 Other La1;lineage4.1.2 None
ERR4831117 HR-TB lineage4.9;lineage7 None
ERR4797184 HR-TB lineage4.9 None
SRR10808730 Other lineage4.9 None
ERR369156 Sensitive lineage4.9 None
ERR4872077 Pre-XDR-TB lineage5.2 None
SRR11972367 Sensitive lineage2.2.1 None
SRR1915485 Other La1.2.BCG None
ERR970413 MDR-TB lineage2.2.1 None
ERR9787030 RR-TB lineage6.1.2 None
ERR502510 HR-TB lineage4.9 None
SRR6045892 Sensitive lineage4.9 None
SRR6046253 Sensitive lineage4.9 None
ERR3283057 Sensitive La3;lineage4.9 None
ERR216938 HR-TB La1.7;lineage4.9 None
SRR5341396 Other lineage3;lineage4.9 None
SRR5341456 Other lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
SRR20970016 Other lineage2.2 None
ERR176560 HR-TB La1.7;lineage4.9 None
ERR363456 Sensitive lineage4.9 None
ERR8479578 HR-TB lineage1.1.3.1 None
SRR12708416 Sensitive None
SRR6045795 Other lineage2.2.1 None
ERR245675 Sensitive lineage1.1.2 None
ERR349300 Other lineage4.9 None
ERR6866807 RR-TB lineage4.9 None
SRR5067699 Other lineage2.2.1.1 vn
SRR1173568 Sensitive lineage4.9 None
ERR4797474 Other lineage4.9 None
SRR5341373 Other lineage4.9 None
ERR4810624 MDR-TB lineage2.2 None
ERR4831616 MDR-TB lineage2.2.1 None
ERR4831883 MDR-TB lineage2.2.1.1 vn
DRR185083 Other lineage2.2.1.1 vn
ERR702405 HR-TB lineage4.9 None
SRR6046492 Other lineage4.9 None
ERR3283055 HR-TB lineage4.9 None
SRR1792478 HR-TB La1.7.1 None
ERR4799989 Pre-XDR-TB lineage2.2.1.2 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
ERR3283031 Other La3;lineage4.9 None
SRR20969731 Other lineage2.2.1 None
SRR12142339 HR-TB lineage2.2.1 None
ERR4831617 MDR-TB lineage2.2.1 None
ERR926154 Sensitive lineage4.9 None
ERR245794 HR-TB lineage4.3.4.2.1 None
ERR736848 Other lineage4.9 None
ERR176518 Sensitive lineage4.3.4.2.1 None
SRR5341300 HR-TB lineage4.9 None
ERR323115 Sensitive lineage4.9 None
ERR9119669 MDR-TB lineage4.9 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR067699 HR-TB La1;lineage2;lineage4.9 None
SRR14782054 Other lineage4.9 None
SRR5067543 MDR-TB lineage2.2.1.1 vn
SRR3675495 RR-TB lineage2.1;lineage4.9 None
ERR3283030 HR-TB lineage4.9 None
ERR1063883 HR-TB lineage4.9 None
SRR6045347 Other lineage4.9 None
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
ERR3797019 Other La1.8.1 None
SRR7236177 Other La1.8.1 None
ERR176778 HR-TB lineage4.9 None
ERR926160 Other lineage4.9 None
SRR10315567 HR-TB lineage2.2.1 None
SRR3675582 Other lineage4.9 None
ERR4811030 Other lineage4.9 None
SRR15014655 Other M.canetti;lineage1 None
ERR3283011 Other La3;lineage4.9 None
ERR9119232 Other lineage2.2.1.1 None
ERR1063849 HR-TB lineage4.9 None
SRR5341461 HR-TB lineage4.9 None
ERR1063846 HR-TB lineage4.9 None
SRR1180996 Other lineage4.9 None
SRR6789624 HR-TB lineage4.1.1.3 None
ERR349264 Other lineage4.9 None
ERR2041726 MDR-TB lineage4.1.2.1 None
ERR323062 HR-TB lineage4.9 None
ERR1063862 HR-TB lineage4.9 None
ERR3283047 Sensitive La3;lineage4.9 None
SRR3675585 HR-TB lineage4.9 None
ERR926163 Other lineage4.9 None
SRR5341387 Other lineage4.9 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR2041725 MDR-TB lineage4.1.2.1 None
SRR18549032 HR-TB lineage2.2.1.2;lineage7 None
ERR405209 Sensitive La1.7;lineage4.9 None
SRR14801759 MDR-TB La1.7;lineage4.9 None
SRR9613550 HR-TB lineage4.1.2.1 None
ERR9787362 Sensitive lineage6 None
ERR3797081 Sensitive lineage4.9 None
ERR3797073 Other La1.8.1 None
SRR3675541 Sensitive lineage4.9 None
SRR9971112 HR-TB lineage2.2.1 None
ERR323108 HR-TB La1.7;lineage4.9 None
ERR3797064 Other La3;lineage4.9 None
ERR926164 Other lineage4.9 None
ERR363502 Other lineage4.9 None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
SRR19295647 HR-TB lineage4.9 None
SRR14782405 HR-TB lineage4.9 None
SRR3675246 Other lineage4.9 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
ERR3797046 HR-TB lineage4.9 None
ERR3283040 HR-TB lineage4.9 None
ERR4769452 Other lineage4.9 None
ERR4769450 Other lineage4.9 None
ERR736834 HR-TB lineage4.9 None
ERR6359082 Other lineage4.9 None
SRR5341299 HR-TB lineage4.9 None
SRR2010299 MDR-TB lineage2.2.1 None
SRR1175507 Sensitive lineage4.1.1.3;lineage4.9 None
ERR4818110 Sensitive lineage4.9 None
ERR926155 Other lineage4.9 None
SRR5341469 HR-TB lineage4.9 None
ERR161037 HR-TB lineage4.9 None
ERR926161 Sensitive lineage4.9 None
ERR736856 HR-TB lineage4.9 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
SRR6045053 Other lineage4 None
SRR8692887 Other None
ERR1199132 Sensitive lineage4.6.1.1 None
ERR6358979 HR-TB lineage4.9 None
ERR369162 Other lineage4.9 None
ERR3797029 Other lineage4.9 None
SRR1175500 Sensitive lineage4.1.1.3;lineage4.9 None
SRR9971114 Other lineage2.2.1 None
ERR736872 HR-TB lineage4.9 None
ERR212034 HR-TB La1.7;lineage4.9 None
ERR779852 HR-TB lineage4.9 None
SRR1175127 Other lineage2.2.1.2 None
ERR4769421 Other La1.2 None
ERR4818252 HR-TB lineage4.1.1.2 None
SRR26937134 Pre-XDR-TB lineage2.2.1.1 None
ERR2513121 Sensitive lineage3.1.3 None
ERR736817 HR-TB lineage4.3.4 None
SRR6045010 Sensitive lineage4.9 None
ERR369157 Sensitive lineage4.9 None
SRR6046046 Other lineage4.9 None
ERR4798099 HR-TB lineage4.9 None
SRR1159378 Other lineage4.9 None
SRR6045217 Other lineage4.9 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
ERR502943 Sensitive lineage2.2.1;lineage4 None
SRR6046878 Other lineage4.9 None
ERR4188247 HR-TB lineage4.9 None
SRR9970980 HR-TB lineage4.1.2 None
SRR9971041 MDR-TB lineage4.3.3 None
ERR4832018 HR-TB lineage2.2.1.1 vn
ERR3797048 Other La3;lineage4.9 None
SRR5067302 HR-TB lineage2.2.1.1 vn
ERR4831910 MDR-TB lineage2.2.1.1 None
ERR6866410 HR-TB lineage4.9 None
ERR4800102 Sensitive lineage3.1.2.1 None
ERR4830220 HR-TB lineage2.2.1.1 vn
SRR5065249 HR-TB lineage2.2.1.1 vn
SRR5341400 Sensitive lineage4.9 None
ERR387051 RR-TB lineage4.9 None
ERR926157 Other lineage4.9 None
ERR2512770 Sensitive lineage4.2.1 None
SRR5067366 Other lineage2.2.1.1 vn
ERR369163 Other lineage4.9 None
SRR6045548 Other lineage4.9 None
ERR9787256 Other lineage6.1.3 None
ERR181887 Other lineage4.9 None
ERR9119483 Pre-XDR-TB lineage5.2 None
SRR5341384 HR-TB lineage4.9 None
ERR4769521 RR-TB lineage4.9 None
SRR16156817 Other lineage4.9 None
SRR1183965 Sensitive lineage4.9 None
SRR6046593 Other lineage4.9 None
ERR323066 HR-TB lineage4.9 None
ERR124636 HR-TB lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
SRR5341308 HR-TB lineage4.9 None
ERR4831862 MDR-TB lineage2.2.1.1 vn
ERR3797063 Other La3;lineage4.9 None
ERR161039 HR-TB La3;lineage4.3.4 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
ERR987765 Sensitive lineage4.6.1.1 None
SRR6511621 HR-TB lineage4.9 None
SRR10808805 Other La1;lineage4.9 None
SRR5341323 Sensitive lineage4.9 None
ERR9119264 HR-TB lineage2.2.1.1 None
SRR5067338 Other lineage2.2.1.1 vn
ERR4799513 HR-TB lineage2.2 None
ERR751326 Other lineage4.9 None
SRR3675235 HR-TB lineage4.9 None
ERR3445502 HR-TB lineage4.9;lineage7 None
ERR176779 HR-TB lineage4.9 None
ERR181744 HR-TB La3;lineage4.9 None
SRR10808490 Sensitive lineage2.2.1.1 None
SRR5431730 Other La1.8.1 None
ERR4796254 Other lineage4.9 None
ERR108471 HR-TB lineage4.9 None
ERR4797193 HR-TB lineage1.1.2 None
ERR1063858 HR-TB lineage4.9 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
SRR14802079 MDR-TB lineage4.2.1 None
SRR10809074 HR-TB lineage4.9 None
ERR4812155 Other lineage4.9 None
SRR6044875 Other lineage4.9 None
ERR133825 HR-TB La1;lineage4.9 None
ERR363453 Other lineage4.9 None
SRR5341455 Sensitive lineage4.9 None
ERR363447 Other lineage4.9 None
SRR1158918 Other lineage4.9 None
SRR6046720 HR-TB lineage4.9;lineage9 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
SRR6046259 Sensitive lineage4.9 None
ERR11043089 HR-TB lineage2.2.1.1 None
ERR373947 Other lineage4.9 None
SRR5341467 Other lineage4.9 None
ERR4798431 Other lineage4.1;lineage4.9 None
SRR1173777 Sensitive lineage4.9 None
SRR6044835 Other lineage4.9 None
ERR5311094 HR-TB lineage4.9 None
SRR5341425 Other lineage4.9 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR212125 HR-TB lineage4.9 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
ERR6866022 HR-TB lineage4.8;lineage4.9 None
ERR1034634 HR-TB lineage4.9 None
ERR4796929 Sensitive lineage4.9 None