EBG00000313325 - n.1004C>G
Drug resistance types
37 Sensitive
8 RR-TB
88 HR-TB
25 MDR-TB
9 Pre-XDR-TB
0 XDR-TB
106 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage5.2 | 2 |
| lineage4.9 | 130 |
| La3;lineage4.9 | 8 |
| lineage2.2.1 | 13 |
| La1.7;lineage4.9 | 7 |
| lineage4.8;lineage4.9 | 2 |
| lineage3 | 6 |
| La1.2.BCG | 3 |
| lineage2.2 | 4 |
| 3 | |
| lineage4 | 4 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.5 | 1 |
| lineage3.1.3 | 1 |
| lineage6.1.3 | 2 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage4.3.4.2 | 2 |
| La1.7;lineage4.9;lineage7 | 3 |
| La1.8.1 | 5 |
| lineage4.1.2.1 | 6 |
| lineage4.9;lineage9 | 2 |
| lineage4.3.2.1 | 2 |
| La1;lineage4.9 | 3 |
| lineage4.4.1.1 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| La2;lineage4.9 | 1 |
| lineage4.2.1 | 1 |
| lineage1.1.3.1 | 2 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La1.7 | 1 |
| lineage4.4.1.2 | 1 |
| La3;lineage4 | 1 |
| lineage4.4.2 | 1 |
| lineage4.1.1.3 | 3 |
| lineage4.8 | 4 |
| lineage2.2.1.2 | 3 |
| La1.2 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.3.4.2.1 | 3 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La1.2;La1.8.1 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage2.2.1.1 | 2 |
| La1.3 | 1 |
| lineage2.2.2 | 1 |
| La1;lineage4.1.2 | 1 |
| lineage4.9;lineage7 | 2 |
| M.canetti;lineage4.9 | 2 |
| lineage2.1;lineage4.9 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage2;lineage4 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage4.3.3 | 3 |
| lineage4.6.2.2 | 1 |
| lineage1.1.2 | 2 |
| La1.7.1 | 1 |
| lineage4.1.2 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage2.2.1.2;lineage7 | 1 |
| lineage6 | 1 |
| lineage4.3.2 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.2;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 273 |
Geographic prevalence
Country level data for this variant is available for 4 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4872077 | Pre-XDR-TB | lineage5.2 | None | SRR5341425 | Other | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR1180172 | RR-TB | lineage2.2.1 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR6866022 | HR-TB | lineage4.8;lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR1915487 | Other | La1.2.BCG | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | ERR971389 | Other | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR1063896 | HR-TB | None | SRR28351347 | Other | lineage3 | None | SRR28351339 | MDR-TB | lineage4 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR752229 | Other | lineage4.5 | None | ERR3797029 | Other | lineage4.9 | None | SRR1173568 | Sensitive | lineage4.9 | None | ERR4797474 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4024991 | HR-TB | lineage4.8;lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR10808668 | Other | lineage2.2.1 | None | ERR9787336 | RR-TB | lineage6.1.3 | None | SRR6046492 | Other | lineage4.9 | None | ERR9786076 | Other | lineage3 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR9786592 | Other | lineage4.3.4.2 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR3283031 | Other | La3;lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR1172310 | MDR-TB | lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR5341300 | HR-TB | lineage4.9 | None | SRR6045548 | Other | lineage4.9 | None | ERR3275709 | HR-TB | lineage3 | nl | ERR4769439 | HR-TB | lineage4.9 | None | ERR9119483 | Pre-XDR-TB | lineage5.2 | None | SRR7240476 | Other | La1.8.1 | None | SRR16156817 | Other | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | ERR323066 | HR-TB | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675245 | Other | lineage4.1.2.1 | None | ERR867526 | MDR-TB | lineage2.2.1 | None | SRR5341308 | HR-TB | lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR6511621 | HR-TB | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR2446566 | Other | lineage4.9 | None | ERR736865 | MDR-TB | lineage4.3.2;lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR5341387 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR4769474 | HR-TB | lineage4.9 | None | SRR5341432 | Other | La1.7;lineage4.9;lineage7 | None | ERR323039 | MDR-TB | La2;lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR3797081 | Sensitive | lineage4.9 | None | ERR9634265 | Sensitive | lineage4.3.4.2 | None | ERR4816478 | HR-TB | lineage4 | None | SRR9971112 | HR-TB | lineage2.2.1 | None | ERR3283042 | HR-TB | lineage4.9 | None | ERR4821616 | Other | lineage1.1.3.1 | None | ERR926164 | Other | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR5341293 | Sensitive | lineage4.9 | None | SRR6045158 | Other | lineage4.9 | None | SRR16156775 | Other | lineage4.9 | None | SRR5341455 | Sensitive | lineage4.9 | None | SRR3675222 | Other | La1.7 | None | SRR10808730 | Other | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | SRR1915485 | Other | La1.2.BCG | None | ERR4769450 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR502510 | HR-TB | lineage4.9 | None | SRR1183144 | RR-TB | lineage2.2.1 | None | ERR3283028 | Other | La3;lineage4 | None | ERR4769442 | Sensitive | lineage4.9 | None | DRR188519 | Other | lineage4.4.2 | None | ERR108125 | RR-TB | lineage4.9 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | SRR8692887 | Other | None | ERR987722 | MDR-TB | None | ERR137286 | Other | lineage4.9 | None | ERR6358979 | HR-TB | lineage4.9 | None | ERR4819175 | Other | lineage4.1.1.3 | gb | ERR9786639 | Sensitive | lineage4.8 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR4797264 | HR-TB | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR779852 | HR-TB | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | SRR8692894 | Other | lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR5341330 | Other | lineage4.9 | None | ERR4769427 | Other | La1.2 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR4798099 | HR-TB | lineage4.9 | None | SRR5341298 | Other | lineage4.9 | None | ERR702405 | HR-TB | lineage4.9 | None | SRR1159378 | Other | lineage4.9 | None | SRR6045217 | Other | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR6045832 | Other | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR926156 | Other | lineage4.9 | None | SRR5341400 | Sensitive | lineage4.9 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | SRR5341313 | Other | La1.7;lineage4.9;lineage7 | None | ERR4799025 | Other | lineage4.8 | None | SRR6046644 | MDR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR9787256 | Other | lineage6.1.3 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR4821655 | HR-TB | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR3797019 | Other | La1.8.1 | None | SRR6046250 | Other | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR3797063 | Other | La3;lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR323062 | HR-TB | lineage4.9 | None | ERR3275190 | Other | lineage3 | nl | ERR926163 | Other | lineage4.9 | None | SRR5818464 | Other | lineage4.9 | None | SRR10808490 | Sensitive | lineage2.2.1.1 | None | ERR4769436 | Other | La1.3 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | ERR323107 | HR-TB | lineage4.9 | None | SRR8692825 | Other | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR3797073 | Other | La1.8.1 | None | SRR5341453 | Other | lineage4.9 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR4797184 | HR-TB | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR3675389 | Other | lineage4.9 | None | SRR1158918 | Other | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR736834 | HR-TB | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR926155 | Other | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR10796632 | Other | lineage4.3.3 | None | ERR3797080 | Sensitive | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | ERR9786597 | Other | lineage4.6.2.2 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | SRR5341373 | Other | lineage4.9 | None | ERR4810624 | MDR-TB | lineage2.2 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | ERR9786276 | Sensitive | lineage4.8 | None | ERR2693252 | HR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4.9 | None | ERR4822138 | Other | lineage4.1.2.1 | None | SRR5535933 | Other | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR926165 | Other | lineage4.9 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR6866410 | HR-TB | lineage4.9 | None | SRR7535082 | Other | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR736848 | Other | lineage4.9 | None | ERR926157 | Other | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR2446509 | Other | lineage3 | nl | ERR067699 | HR-TB | La1;lineage2;lineage4.9 | None | ERR987729 | MDR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | SRR14782054 | Other | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR124636 | HR-TB | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR926160 | Other | lineage4.9 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | ERR3283032 | Other | lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR502524 | MDR-TB | lineage4.9;lineage6.3 | None | ERR1035122 | HR-TB | lineage4.9 | None | SRR3675571 | MDR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | ERR3445502 | HR-TB | lineage4.9;lineage7 | None | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | ERR4796254 | Other | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR9787362 | Sensitive | lineage6 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR10808399 | Sensitive | lineage4.9 | None | ERR4818272 | Other | lineage4.3.2 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR3283014 | Other | La3;lineage4.9 | None | SRR10809074 | HR-TB | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | ERR4828872 | RR-TB | lineage4.2;lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None |
|---|
