EBG00000313325 - n.1004C>G


Drug resistance types
73 Sensitive 6 RR-TB 95 HR-TB 17 MDR-TB 14 Pre-XDR-TB 0 XDR-TB 94 Other
lineage Counts
lineage Count
70
lineage2.1 4
lineage4 69
lineage4.3.4.2.1 3
lineage4.1.2.1 4
lineage4.9 51
lineage3.1.3 2
lineage3 6
lineage4.4.1.1 2
lineage4.1.1.2 1
lineage4.3.2 1
lineage4.1 2
lineage1.1.2 3
lineage2.2.1 21
lineage1.1.3.1 2
lineage1.1.1.1 1
lineage4.8 4
lineage5.2 2
lineage2.2.1.1 2
La2 1
lineage4.1.2 3
lineage4.3.2.1 1
lineage4.3.3 5
lineage4.4.1.2 1
lineage4.4.2 1
lineage4.1.1.3 2
lineage4.1.1 1
lineage4.3.4 1
La1.8.1 5
lineage4;lineage3.1 1
La1.2 2
La1.3 1
lineage4.9;La1.3 1
lineage3.1.2 1
La1 1
lineage2.2 4
lineage2.2.1.2 3
lineage4.5 1
lineage4.3.4.2 1
lineage4.6.2.2 1
lineage6.1.3 1
lineage6 2
lineage3.1.2.2;lineage3.1.2.1 1
lineage4.4.1.1.1 1
lineage4.2.1 1
La1.7.1 2
lineage7;lineage2.2.1.2 1
lineage4;lineage2.2 1
lineage4.9;lineage4.8.1;lineage4.1.1 1
spoligotype Counts
spoligotype Count
None 299
Geographic prevalence
Country level data for this variant is available for 4 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR3675222 Other None
ERR702405 Sensitive lineage2.1 None
SRR3675312 HR-TB lineage4 None
SRR3675246 Sensitive lineage4 None
ERR176518 Sensitive lineage4.3.4.2.1 None
SRR3675245 Other lineage4.1.2.1 None
SRR3675270 HR-TB None
SRR3675509 Other lineage4.9 None
ERR176740 HR-TB None
SRR5341422 HR-TB lineage2.1 None
ERR2027220 Other lineage3.1.3 None
ERR212034 HR-TB None
ERR212138 HR-TB lineage4 None
ERR4816738 Sensitive lineage4.9 None
SRR5341384 Sensitive lineage4.9 None
ERR4816656 HR-TB None
SRR3675571 HR-TB None
ERR216965 HR-TB lineage4.9 None
ERR3275190 Other lineage3 nl
ERR4816868 Other lineage4.4.1.1 None
ERR2513121 Sensitive lineage3.1.3 None
ERR3275709 HR-TB lineage3 nl
ERR4818110 Sensitive lineage4.9 None
ERR4818252 Other lineage4.1.1.2 None
ERR4818272 Other lineage4.3.2 None
ERR245794 HR-TB lineage4.3.4.2.1 None
ERR4819051 Other lineage4 None
ERR4818929 HR-TB None
ERR2446566 Other lineage4.1 None
ERR245675 Sensitive lineage1.1.2 None
SRR5341412 Pre-XDR-TB lineage3 None
SRR5341453 Sensitive None
ERR4818952 Other lineage3 None
SRR5341366 Sensitive lineage4 None
SRR5341373 HR-TB lineage4 None
SRR5341387 Other lineage4 None
SRR5341396 Other lineage4 None
SRR5341400 HR-TB lineage4 None
SRR5341432 HR-TB lineage4 None
SRR5341425 Other lineage4 None
ERR1035138 MDR-TB None
SRR5341293 HR-TB lineage4 None
SRR5341456 Other None
SRR5341455 Sensitive lineage4 None
SRR5341300 Other lineage4 None
SRR5341298 Sensitive lineage4 None
SRR5341308 Sensitive lineage4 None
SRR5341299 Sensitive lineage4 None
SRR5341303 RR-TB lineage4 None
SRR5341313 HR-TB None
ERR4819910 Other lineage4.9 None
SRR5341315 Sensitive None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
SRR5341330 HR-TB None
SRR5341310 Other lineage1.1.2 None
ERR6359082 Other lineage4.9 None
SRR5341467 Other lineage4 None
SRR5341461 Sensitive lineage4 None
SRR5341465 Pre-XDR-TB lineage2.2.1 None
ERR2693238 HR-TB lineage4.9 None
SRR5341469 Other lineage4 None
SRR5341470 HR-TB None
ERR2446509 Other lineage3 nl
ERR2660539 Other lineage4.9 None
SRR5535933 HR-TB None
SRR6045519 HR-TB None
ERR4822138 Other lineage4.1.2.1 None
SRR6046210 Other lineage4 None
ERR4821655 Sensitive lineage4 None
ERR4821616 Other lineage1.1.3.1 None
SRR6045892 Sensitive None
SRR5818647 RR-TB lineage4.3.4.2.1 None
SRR6046141 Other lineage4.9 None
SRR5818464 Other lineage4.9 None
SRR6045832 HR-TB lineage4.9 None
SRR6044876 Sensitive lineage4 None
SRR6044835 Sensitive lineage4 None
SRR6045158 Other lineage4.9 None
SRR6045124 Other lineage4.9 None
SRR6045002 MDR-TB lineage4.9 None
SRR6045010 Other lineage4 None
SRR6045053 Other None
SRR6045217 Other lineage4 None
SRR6046046 Other None
SRR6045233 HR-TB None
SRR6046253 HR-TB lineage4.9 None
SRR6046250 Other lineage4.9 None
SRR6511621 HR-TB None
SRR6046299 HR-TB None
SRR6046385 Other lineage4.9 None
ERR2851356 Sensitive lineage4.9 None
SRR6046612 Other lineage1.1.1.1 None
ERR4829530 Pre-XDR-TB lineage4.8 None
SRR6046492 Other None
SRR6046644 HR-TB None
ERR4832002 Pre-XDR-TB lineage2.1 None
ERR323037 HR-TB lineage4 None
ERR4831618 MDR-TB lineage2.1 None
ERR4831117 HR-TB None
ERR4872077 Pre-XDR-TB lineage5.2 None
ERR4831617 MDR-TB lineage2.2.1 None
ERR4831620 MDR-TB lineage2.2.1 None
ERR4831621 MDR-TB lineage2.2.1.1 None
ERR4831616 MDR-TB lineage2.2.1 None
ERR4831657 MDR-TB lineage2.2.1 None
ERR502524 HR-TB La2 None
SRR6789624 MDR-TB lineage4.1 None
ERR294266 HR-TB None
ERR502510 Sensitive lineage4 None
SRR9971112 Other lineage2.2.1 None
SRR7535082 Sensitive lineage4 None
SRR9970978 Sensitive lineage4.1.2 None
SRR9970979 Sensitive lineage4.8 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR9971041 MDR-TB lineage4.3.3 None
SRR8651616 MDR-TB lineage2.2.1 None
SRR9970980 Other lineage4.1.2 None
ERR323053 HR-TB None
ERR323039 HR-TB None
ERR323056 HR-TB lineage4.4.1.2 None
ERR323066 Sensitive lineage4 None
ERR323108 HR-TB lineage4 None
DRR188519 Other lineage4.4.2 None
ERR323107 Other lineage4 None
ERR323085 Sensitive lineage4 None
ERR4819175 Other lineage4.1.1.3 gb
ERR067699 HR-TB lineage4 None
ERR1023525 HR-TB lineage4 None
ERR1023502 MDR-TB lineage2.2.1 None
ERR1035122 Sensitive None
ERR1063855 Other lineage4 None
ERR1063883 Sensitive lineage4 None
ERR10796591 MDR-TB lineage4.9 None
ERR1063896 Sensitive None
ERR10796563 Other lineage4.3.3 None
ERR10796564 Other lineage4.3.3 None
ERR108125 Pre-XDR-TB lineage4.9 None
ERR10796596 Other lineage4.9 None
ERR10796620 Other lineage4.1.1 None
ERR10796632 Other lineage4.3.3 None
ERR10796633 RR-TB lineage4.3.4 None
ERR137286 Sensitive lineage4 None
ERR133825 Sensitive lineage4 None
ERR3273109 MDR-TB lineage4 None
ERR323115 Sensitive lineage4 None
ERR3283032 HR-TB None
ERR3283014 HR-TB None
ERR3283028 Other None
ERR3283030 HR-TB lineage4.9 None
ERR3283040 HR-TB None
ERR3283031 HR-TB None
ERR3445502 HR-TB lineage4 None
ERR3283055 HR-TB None
ERR3283057 HR-TB lineage4 None
ERR3445504 HR-TB None
ERR3445501 HR-TB None
ERR3283047 HR-TB None
ERR4024991 Other None
ERR3797015 HR-TB None
ERR3797019 Other La1.8.1 None
ERR3797043 HR-TB None
ERR3797046 HR-TB None
ERR3797048 HR-TB None
ERR3797060 Other La1.8.1 None
ERR3797065 MDR-TB lineage4 None
ERR3797068 Other La1.8.1 None
ERR3797073 HR-TB La1.8.1 None
ERR3806850 HR-TB lineage4.1.2.1 None
ERR3797063 HR-TB None
ERR3797080 HR-TB lineage4.9 None
ERR3797079 Sensitive lineage4 None
ERR3797064 Sensitive None
ERR3797081 Sensitive lineage4 None
ERR3797087 Sensitive lineage4 None
ERR405209 Sensitive lineage4 None
ERR405219 HR-TB lineage4;lineage3.1 None
ERR4798099 Other None
ERR4188247 HR-TB None
ERR473332 Other lineage4 None
ERR4769452 HR-TB None
ERR4769457 Other lineage4.9 None
ERR4769450 HR-TB None
ERR4797184 Sensitive lineage4 None
ERR4797193 HR-TB lineage1.1.2 None
ERR4797474 Other None
ERR4769427 Other La1.2 None
ERR4769436 Other La1.3 None
ERR4769442 HR-TB lineage4 None
ERR4769446 Sensitive lineage4.9;La1.3 None
ERR4769444 HR-TB lineage4.9 None
ERR4769474 HR-TB lineage4 None
ERR4769497 HR-TB La1.2 None
ERR4796254 Sensitive lineage4 None
ERR4796472 Pre-XDR-TB lineage2.2.1 None
ERR4796929 Sensitive lineage4 None
ERR4797264 Sensitive None
ERR4798648 HR-TB lineage3.1.2 None
ERR4798262 HR-TB La1 None
ERR4799025 Pre-XDR-TB None
ERR4799378 Sensitive lineage4 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR6358979 Other None
ERR4799513 HR-TB lineage2.2 None
ERR4799989 Pre-XDR-TB lineage2.2.1.2 None
ERR4810624 HR-TB lineage2.2 None
ERR4811493 HR-TB None
ERR6358951 HR-TB lineage4 None
ERR736872 Sensitive lineage4 None
ERR6359066 HR-TB lineage4 None
ERR6359074 HR-TB lineage4.9 None
ERR6866410 Sensitive None
ERR6866639 Other None
ERR736834 Sensitive lineage4 None
ERR6866022 Other None
ERR6866547 Sensitive lineage4 None
ERR736831 HR-TB lineage4.9 None
ERR736837 Other lineage4.9 None
ERR736848 HR-TB None
ERR736865 HR-TB None
ERR9119483 Pre-XDR-TB lineage5.2 None
ERR751326 Sensitive lineage4 None
ERR752229 Other lineage4.5 None
ERR8479578 Sensitive lineage1.1.3.1 None
ERR9634265 Sensitive None
ERR9786276 Sensitive lineage4.8 None
ERR9786076 Sensitive lineage3 None
ERR9786911 HR-TB lineage4.1.2.1 None
ERR9786592 Sensitive lineage4.3.4.2 None
ERR9786597 Sensitive lineage4.6.2.2 None
ERR9786639 Sensitive lineage4.8 None
ERR987722 HR-TB None
ERR9787256 Other lineage6.1.3 None
ERR9787336 Other lineage6 None
ERR9787362 Sensitive lineage6 None
ERR987729 HR-TB lineage3.1.2.2;lineage3.1.2.1 None
ERR9896153 RR-TB lineage4.4.1.1 None
SRR10315567 Other lineage2.2.1 None
SRR10808399 Sensitive lineage4 None
SRR10808668 Sensitive lineage2.2.1 None
SRR10808490 Sensitive lineage2.2.1.1 None
SRR10808805 Sensitive None
SRR1158918 Sensitive lineage4 None
SRR10809074 Sensitive lineage4 None
SRR11349145 Pre-XDR-TB lineage4.4.1.1.1 None
SRR11349143 Sensitive lineage4.1.2 None
SRR11349211 Pre-XDR-TB lineage4.3.3 None
SRR1172796 Sensitive lineage2.2.1.2 None
SRR1172310 HR-TB None
SRR1172146 Sensitive lineage4.9 None
SRR1172885 HR-TB lineage4.9 None
SRR1173777 Other lineage4 None
SRR1173568 Other lineage4.9 None
SRR12142339 HR-TB lineage2.2.1 None
SRR1175052 HR-TB lineage4.9 None
SRR11972367 Sensitive lineage2.2.1 None
SRR1174897 HR-TB None
SRR1175127 Sensitive lineage2.2.1.2 None
SRR1180172 Other lineage2.2.1 None
SRR1180996 HR-TB lineage4 None
SRR1183144 Other lineage2.2.1 None
SRR1183965 Sensitive lineage4.9 None
SRR18911231 Sensitive lineage4.1.1.3 None
SRR14782405 HR-TB None
SRR14801749 Sensitive None
SRR14802079 MDR-TB lineage4.2.1 None
SRR1791747 Other La1.8.1 None
SRR1792478 HR-TB La1.7.1 None
SRR13199739 Other La1.7.1 None
SRR16156775 Other lineage4.9 None
SRR18549032 HR-TB lineage7;lineage2.2.1.2 None
SRR18913750 Other lineage2.2.1 None
SRR19325518 MDR-TB lineage2.2.1 None
SRR8692888 Other lineage4.9 None
SRR20969731 Other lineage2.2.1 None
SRR20969708 HR-TB lineage2.2 None
SRR20970016 Other lineage2.2 None
SRR8692790 RR-TB lineage4 None
SRR8692812 Other lineage4.9 None
SRR8692816 Other lineage4.9 None
SRR8692868 Sensitive lineage4.9 None
SRR8692879 HR-TB lineage4.9 None
SRR8692885 Other lineage4.9 None
SRR8692893 Other lineage4.9 None
SRR8692897 Other lineage4.9 None
SRR8692905 HR-TB None
SRR8692782 Other lineage4.9 None
SRR8692800 Other lineage4 None
SRR8692818 Other lineage4.9 None
SRR8692825 Other lineage4.9 None
SRR8692855 Other lineage4.9 None
SRR8692863 Other lineage4;lineage2.2 None
SRR8692882 HR-TB lineage4.9 None
SRR8692894 Other lineage4.9 None
SRR8692871 Other lineage4.9 None
SRR8692887 Other None
SRR8692899 Other lineage4.9 None
SRR3675488 HR-TB None
ERR1577252 HR-TB lineage2.2.1 None
ERR779852 Sensitive lineage4.9;lineage4.8.1;lineage4.1.1 None