Rv3596c - c.1056G>C


Drug resistance types
106 Sensitive 8 RR-TB 114 HR-TB 24 MDR-TB 8 Pre-XDR-TB 0 XDR-TB 110 Other
lineage Counts
lineage Count
lineage4.9 212
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
La1.7;lineage4.9;lineage7 3
lineage4.3.4.2.1 3
lineage4.8 4
lineage2.2.1 24
lineage4 6
La1;lineage4.9 2
La1.7;lineage4.9 6
lineage4.4.1.1 1
La1.7.1;lineage4.9 1
lineage4.3.3 4
La3;lineage4.9 8
lineage4.9;lineage7 5
lineage4.6.2.2 2
lineage6.1.3 3
lineage4.4.1.2 1
lineage3;lineage4.9 1
lineage3.1 1
2
lineage4.2.1.1;lineage4.3.3 1
La1.7.X-unk4;lineage4.9 1
La1.8.1 4
La1.7.1 1
La3;M.canetti;lineage4.9 1
La1;lineage2;lineage4.9 1
lineage4.8.1 1
lineage2.2.1;lineage4 2
lineage1;lineage4.9 2
La1.7.1;La1.7.X-unk4 1
lineage4.5 1
lineage2.2.1.2;lineage7 1
lineage1.2.1.2 1
lineage1.1.2 3
La1.3 1
lineage4.3.2.1 2
lineage2.1;lineage4.9 2
lineage2.2.1;lineage4.9 2
lineage4.8;lineage4.9 2
lineage4.1.1.3;lineage4.9 2
lineage3 5
La3;lineage4 1
lineage4.4.2 1
lineage4.1.2.1 4
lineage2.2.1.2 2
lineage4.1.1.2 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
lineage4.3.4.2 1
lineage3.1.2.1 1
lineage1.2.1.1 1
lineage1.1.1 1
lineage3.1.3 2
La1.7;lineage3.1;lineage4 1
lineage2.2.2 1
lineage4.1.1.3 4
lineage2;lineage4.9 1
lineage4.2.1 2
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
La1.7.1;La1.7.X-unk4;lineage7 1
lineage5.1.2 1
La3;lineage2.1;lineage4.9;lineage6.3 1
La1.7;lineage3;lineage4.9;lineage7 1
lineage4.1;lineage4.9 1
lineage1.1.1;lineage4 1
La1.2.BCG 1
lineage2.2 2
lineage1.1.3.1 1
La1.7;lineage4.9;lineage6 1
lineage2.1;lineage4.9;lineage7 1
lineage4.3.4 1
lineage4.4.1.1.1 2
lineage4.1.2 1
spoligotype Counts
spoligotype Count
None 370
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR5341300 HR-TB lineage4.9 None
ERR2026698 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR5341313 Other La1.7;lineage4.9;lineage7 None
ERR323115 Sensitive lineage4.9 None
ERR4818624 Other lineage4.3.4.2.1 None
SRR10315751 MDR-TB lineage4.8 None
SRR3675577 Sensitive lineage4.9 None
SRR12708415 HR-TB lineage2.2.1 None
SRR1181351 Sensitive lineage4.9 None
SRR16156817 Other lineage4.9 None
SRR1183965 Sensitive lineage4.9 None
SRR1181349 Sensitive lineage4 None
SRR14801749 HR-TB lineage4.9 None
SRR12708414 HR-TB lineage2.2.1 None
ERR176778 HR-TB lineage4.9 None
SRR12708399 MDR-TB lineage4.3.4.2.1 None
SRR1175508 Sensitive lineage4.9 None
ERR926160 Other lineage4.9 None
SRR3675580 Sensitive lineage4.9 None
SRR6511621 HR-TB lineage4.9 None
SRR10808805 Other La1;lineage4.9 None
ERR4814639 HR-TB lineage4.9 None
SRR5341323 Sensitive lineage4.9 None
ERR485006 HR-TB lineage4.9 None
ERR1063862 HR-TB lineage4.9 None
SRR3675585 HR-TB lineage4.9 None
SRR3675522 Other lineage4.9 None
ERR926163 Other lineage4.9 None
SRR5341387 Other lineage4.9 None
SRR1181325 Sensitive lineage4.9 None
SRR1180355 Sensitive lineage4.9 None
SRR3675235 HR-TB lineage4.9 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR176779 HR-TB lineage4.9 None
SRR14801759 MDR-TB La1.7;lineage4.9 None
SRR12708398 Sensitive lineage4.4.1.1 None
ERR323037 Other lineage4.9 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
SRR10808399 Sensitive lineage4.9 None
SRR9971112 HR-TB lineage2.2.1 None
SRR12708409 HR-TB lineage4.3.3 None
SRR3675387 Other lineage4.9 None
SRR5341296 Sensitive lineage4.9 None
SRR10809074 HR-TB lineage4.9 None
ERR3797064 Other La3;lineage4.9 None
ERR4819462 Sensitive lineage4.9 None
SRR19295647 HR-TB lineage4.9 None
SRR3675246 Other lineage4.9 None
ERR473332 Other lineage4.9 None
SRR1175512 Sensitive lineage4.9 None
ERR4831117 HR-TB lineage4.9;lineage7 None
ERR4797184 HR-TB lineage4.9 None
SRR1158918 Other lineage4.9 None
SRR10808730 Other lineage4.9 None
ERR369156 Sensitive lineage4.9 None
ERR3283040 HR-TB lineage4.9 None
ERR5311094 HR-TB lineage4.9 None
ERR4819809 HR-TB lineage4.6.2.2 None
ERR1023236 Other lineage6.1.3 None
SRR1180413 Sensitive lineage4.9 None
ERR4769450 Other lineage4.9 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR212125 HR-TB lineage4.9 None
SRR1062919 HR-TB lineage2.2.1 None
SRR12708419 Other lineage4.3.3 None
SRR5341396 Other lineage3;lineage4.9 None
ERR926155 Other lineage4.9 None
SRR1175506 Sensitive lineage4.9 None
SRR6044780 Sensitive lineage4.9 None
ERR473334 HR-TB lineage4.9 None
ERR161037 HR-TB lineage4.9 None
ERR4769442 Sensitive lineage4.9 None
SRR6045359 HR-TB lineage4.9 None
SRR28351442 HR-TB lineage3.1 None
SRR12708416 Sensitive None
ERR137286 Other lineage4.9 None
ERR6358979 HR-TB lineage4.9 None
ERR176651 Other lineage4.9 None
ERR4769417 Pre-XDR-TB lineage4.9 None
SRR12708418 HR-TB lineage2.2.1 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
SRR5341330 Other lineage4.9 None
ERR369157 Sensitive lineage4.9 None
SRR6046046 Other lineage4.9 None
ERR4798099 HR-TB lineage4.9 None
SRR5341298 Other lineage4.9 None
ERR3275450 Other lineage4 None
ERR9787336 RR-TB lineage6.1.3 None
ERR369151 Other lineage4.9 None
ERR702405 HR-TB lineage4.9 None
SRR6046492 Other lineage4.9 None
ERR4816964 HR-TB lineage4.9 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
SRR11462861 Other La1.8.1 None
SRR1792478 HR-TB La1.7.1 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
SRR1791747 Other La1.8.1 None
ERR6866639 HR-TB lineage4.9 None
SRR6045832 Other lineage4.9 None
ERR3797048 Other La3;lineage4.9 None
SRR10315466 RR-TB lineage2.2.1 None
SRR6046141 Other lineage4.9 None
ERR926156 Other lineage4.9 None
SRR5341400 Sensitive lineage4.9 None
SRR20969731 Other lineage2.2.1 None
ERR4831617 MDR-TB lineage2.2.1 None
ERR926157 Other lineage4.9 None
SRR5153091 HR-TB lineage4.3.3 None
ERR067712 Sensitive lineage4.9 None
ERR067699 HR-TB La1;lineage2;lineage4.9 None
SRR9971150 RR-TB lineage4.8.1 None
SRR5341345 Sensitive lineage4.9 None
ERR4816762 Sensitive lineage4.9 None
ERR181887 Other lineage4.9 None
ERR4769439 HR-TB lineage4.9 None
SRR5341384 HR-TB lineage4.9 None
ERR4818561 Sensitive lineage4.9 None
ERR1063855 Other lineage4.9 None
SRR1181237 Sensitive lineage2.2.1;lineage4 None
ERR400345 Other lineage4.9 None
SRR6045347 Other lineage4.9 None
SRR6046593 Other lineage4.9 None
ERR4798823 HR-TB lineage4 None
ERR4821655 HR-TB lineage4.9 None
ERR323066 HR-TB lineage4.9 None
SRR11662694 Other lineage4.9 None
ERR6359066 HR-TB lineage4.9 None
ERR4797350 Sensitive lineage1;lineage4.9 None
SRR1181283 Sensitive lineage4.9 None
ERR926158 Sensitive lineage4.9 None
SRR22424787 Sensitive lineage4.9 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
ERR4811031 Other lineage4.5 None
ERR3283032 Other lineage4.9 None
ERR4811030 Other lineage4.9 None
ERR3283011 Other La3;lineage4.9 None
SRR5341461 HR-TB lineage4.9 None
SRR6046382 RR-TB lineage2.2.1 None
ERR323062 HR-TB lineage4.9 None
ERR3273109 HR-TB lineage4 None
ERR2446566 Other lineage4.9 None
SRR6046210 Other lineage4.9 None
SRR18549032 HR-TB lineage2.2.1.2;lineage7 None
ERR3445502 HR-TB lineage4.9;lineage7 None
ERR4769474 HR-TB lineage4.9 None
SRR1183054 Sensitive lineage4.9 None
SRR12006550 Other lineage1.2.1.2 None
ERR108471 HR-TB lineage4.9 None
ERR4797193 HR-TB lineage1.1.2 None
ERR4769552 Sensitive La1.3 None
SRR12708396 MDR-TB lineage4.3.2.1 None
ERR736831 Other lineage4.9 None
SRR5341453 Other lineage4.9 None
ERR6358951 Sensitive lineage4.9 None
ERR6359069 HR-TB lineage4.9 None
ERR4812155 Other lineage4.9 None
SRR3675229 Sensitive lineage4.9 None
ERR133825 HR-TB La1;lineage4.9 None
SRR6044876 Sensitive lineage4.9 None
ERR3797047 MDR-TB lineage4.9 None
SRR5341293 Sensitive lineage4.9 None
SRR5341455 Sensitive lineage4.9 None
SRR1180399 Sensitive lineage4.9 None
SRR3675456 RR-TB lineage4.9;lineage7 None
SRR12708392 Other lineage2.2.1 None
SRR3675247 Other lineage4.9 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
SRR5341467 Other lineage4.9 None
SRR5341425 Other lineage4.9 None
SRR11972367 Sensitive lineage2.2.1 None
ERR502510 HR-TB lineage4.9 None
SRR6045892 Sensitive lineage4.9 None
ERR473323 HR-TB lineage4.9 None
ERR2446382 Other lineage4 None
SRR1181390 Sensitive lineage2.2.1;lineage4.9 None
ERR736834 HR-TB lineage4.9 None
ERR6866022 HR-TB lineage4.8;lineage4.9 None
SRR2010299 MDR-TB lineage2.2.1 None
SRR1175507 Sensitive lineage4.1.1.3;lineage4.9 None
SRR5341412 Pre-XDR-TB lineage3 None
ERR4815815 Sensitive lineage4.9 None
ERR2026697 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR4831620 MDR-TB lineage2.2.1 None
ERR502511 HR-TB lineage4.9 None
ERR3283028 Other La3;lineage4 None
DRR188519 Other lineage4.4.2 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
SRR6045053 Other lineage4 None
ERR9786597 Other lineage4.6.2.2 None
SRR6045795 Other lineage2.2.1 None
SRR1175500 Sensitive lineage4.1.1.3;lineage4.9 None
ERR6359074 HR-TB lineage4.9 None
ERR3806850 HR-TB lineage4.1.2.1 None
SRR5341373 Other lineage4.9 None
SRR9971114 Other lineage2.2.1 None
SRR1175127 Other lineage2.2.1.2 None
ERR4831616 MDR-TB lineage2.2.1 None
ERR4818252 HR-TB lineage4.1.1.2 None
SRR20632814 Sensitive lineage4.9 None
SRR1180345 Other lineage4.9 None
SRR1175496 Sensitive lineage4.9 None
ERR6359070 Sensitive lineage4.9 None
ERR2693252 HR-TB lineage4.9 None
SRR1180375 Sensitive lineage4.9 None
ERR3797079 Sensitive lineage4.9 None
ERR502943 Sensitive lineage2.2.1;lineage4 None
SRR6046878 Other lineage4.9 None
SRR5535933 Other lineage4.9 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
ERR9786592 Other lineage4.3.4.2 None
ERR4188247 HR-TB lineage4.9 None
ERR4817667 HR-TB lineage4.8 None
ERR4821686 Sensitive lineage4.1.2.1 None
ERR4596902 MDR-TB lineage3 None
ERR4800102 Sensitive lineage3.1.2.1 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
ERR3283031 Other La3;lineage4.9 None
ERR4814734 Other lineage1.2.1.1 None
SRR12142339 HR-TB lineage2.2.1 None
ERR4816151 Other lineage4.8 None
SRR3675455 Sensitive lineage4.9 None
ERR4819314 HR-TB lineage1.1.1 None
ERR387051 RR-TB lineage4.9 None
ERR176741 Other lineage4.9 None
ERR245794 HR-TB lineage4.3.4.2.1 None
SRR18913742 Sensitive lineage3.1.3 None
ERR736848 Other lineage4.9 None
SRR6046245 Other lineage4.9 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
ERR369161 Sensitive lineage4.9 None
SRR12708407 HR-TB lineage4.3.2.1 None
SRR1175487 Sensitive lineage4.9 None
ERR9787256 Other lineage6.1.3 None
ERR4818536 Other lineage4.9 None
SRR3675495 RR-TB lineage2.1;lineage4.9 None
ERR736837 Pre-XDR-TB lineage4.9 None
ERR3283030 HR-TB lineage4.9 None
ERR1063883 HR-TB lineage4.9 None
SRR5341310 Other lineage1.1.2 None
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
SRR1180312 Sensitive lineage4.9 None
SRR7236177 Other La1.8.1 None
ERR124636 HR-TB lineage4.9 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR4769457 Other lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
SRR5341308 HR-TB lineage4.9 None
ERR3797063 Other La3;lineage4.9 None
SRR12708370 Pre-XDR-TB lineage2.2.2 None
SRR3675582 Other lineage4.9 None
ERR400336 Sensitive lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
ERR1063846 HR-TB lineage4.9 None
SRR3675477 Sensitive lineage4.9 None
ERR400326 Other lineage4.9 None
SRR6789624 HR-TB lineage4.1.1.3 None
ERR1035122 HR-TB lineage4.9 None
ERR736875 HR-TB lineage4.9 None
ERR3283047 Sensitive La3;lineage4.9 None
ERR751326 Other lineage4.9 None
ERR405209 Sensitive La1.7;lineage4.9 None
ERR4829530 Pre-XDR-TB lineage4.8 None
SRR1180319 Sensitive lineage4.9 None
ERR4815471 HR-TB lineage4.9 None
SRR12708413 HR-TB lineage4.1.1.3 None
SRR1180250 Other lineage4.9 None
ERR926159 Sensitive lineage4.9 None
ERR323107 HR-TB lineage4.9 None
SRR1180946 Sensitive lineage2;lineage4.9 None
ERR4796254 Other lineage4.9 None
ERR1063858 HR-TB lineage4.9 None
SRR5341432 Other La1.7;lineage4.9;lineage7 None
SRR14802079 MDR-TB lineage4.2.1 None
ERR3797073 Other La1.8.1 None
SRR12708384 Sensitive lineage4.9 None
SRR3675541 Sensitive lineage4.9 None
ERR323108 HR-TB La1.7;lineage4.9 None
ERR3283014 Other La3;lineage4.9 None
ERR4814396 Sensitive lineage4.1.1.3 None
SRR12416842 HR-TB lineage4.9 None
SRR6044875 Other lineage4.9 None
ERR4819546 HR-TB lineage3 None
ERR4769444 HR-TB lineage4.9 None
ERR926164 Other lineage4.9 None
SRR12708372 Sensitive lineage4.9 None
SRR5341437 Sensitive lineage4.9 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
SRR1180444 Sensitive lineage4.9 None
ERR4797313 Sensitive lineage2.2.1 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
SRR21677886 Sensitive lineage4.9 None
SRR1172796 Sensitive lineage2.2.1.2 None
SRR3675547 Sensitive lineage4.9 None
SRR1180391 Sensitive lineage4.9 None
SRR1184114 Sensitive lineage2.2.1;lineage4.9 None
SRR6044819 Sensitive lineage4.9 None
ERR4769452 Other lineage4.9 None
SRR6044835 Other lineage4.9 None
ERR400538 RR-TB lineage5.1.2 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
SRR12708374 Sensitive lineage4.1;lineage4.9 None
ERR3283057 Sensitive La3;lineage4.9 None
SRR12708371 HR-TB lineage4.1.1.3 None
ERR216938 HR-TB La1.7;lineage4.9 None
ERR4796929 Sensitive lineage4.9 None
ERR4831638 Sensitive lineage1.1.1;lineage4 None
SRR5341299 HR-TB lineage4.9 None
ERR4818110 Sensitive lineage4.9 None
ERR3283021 MDR-TB lineage4.9 None
SRR1915487 Other La1.2.BCG None
SRR1180410 Sensitive lineage4.9 None
SRR11662690 HR-TB lineage4.9 None
SRR5341469 HR-TB lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
ERR926161 Sensitive lineage4.9 None
SRR20970016 Other lineage2.2 None
ERR736856 HR-TB lineage4.9 None
ERR971389 Other lineage4.9 None
ERR181824 MDR-TB lineage4.9 None
ERR8479578 HR-TB lineage1.1.3.1 None
ERR1063896 HR-TB None
SRR28351584 HR-TB lineage2.2.1 None
ERR245675 Sensitive lineage1.1.2 None
ERR6866547 Other La1.7;lineage4.9;lineage6 None
SRR1180406 Sensitive lineage4.9 None
ERR3797029 Other lineage4.9 None
ERR4797474 Other lineage4.9 None
ERR4819051 Sensitive lineage4.9 None
ERR4818710 Sensitive lineage4.9 None
ERR4797264 HR-TB lineage4.9 None
ERR736872 HR-TB lineage4.9 None
ERR779852 HR-TB lineage4.9 None
SRR1180300 Sensitive lineage4.9 None
ERR3797087 Sensitive lineage4.9 None
SRR3675555 MDR-TB lineage2.1;lineage4.9;lineage7 None
SRR6046385 Sensitive lineage4.9 None
ERR2513121 Sensitive lineage3.1.3 None
ERR736817 HR-TB lineage4.3.4 None
ERR4024991 HR-TB lineage4.8;lineage4.9 None
SRR3675539 MDR-TB lineage4.9;lineage7 None
SRR1181215 Sensitive lineage4.4.1.1.1 None
SRR6045010 Sensitive lineage4.9 None
SRR11349145 Pre-XDR-TB lineage4.4.1.1.1 None
ERR9786911 HR-TB lineage4.1.2.1 None
SRR10808668 Other lineage2.2.1 None
ERR400320 Sensitive lineage4.9 None
SRR1180420 Sensitive lineage4.9 None
ERR9786076 Other lineage3 None
SRR3675270 Other lineage4.9 None
SRR20970043 MDR-TB lineage2.2.1 None
SRR1159378 Other lineage4.9 None
SRR9970980 HR-TB lineage4.1.2 None
SRR9971041 MDR-TB lineage4.3.3 None
SRR20969708 HR-TB lineage2.2 None
ERR926165 Other lineage4.9 None
SRR1181402 Sensitive lineage4.9 None
ERR6866410 HR-TB lineage4.9 None
SRR7535082 Other lineage4.9 None
ERR3797015 HR-TB lineage4.9 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
ERR2513259 Other lineage3 None
ERR926162 Sensitive lineage4.9 None
ERR6866125 Sensitive lineage4.1.2.1 None
SRR3675473 Sensitive lineage4.9 None
ERR926154 Sensitive lineage4.9 None
SRR6046564 Sensitive lineage4.9 None
ERR2512770 Sensitive lineage4.2.1 None
ERR4799547 HR-TB lineage2.2.1 None
SRR1184021 Sensitive lineage4.9 None