Rv3596c - c.1659C>T
Drug resistance types
94 Sensitive
3 RR-TB
27 HR-TB
6 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
61 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage6.1.3 | 2 |
| M.canetti | 67 |
| lineage4.9 | 63 |
| La3;M.canetti | 11 |
| La1.6;La3;lineage4.9 | 2 |
| lineage2.2.1 | 7 |
| lineage4.3.2.1 | 1 |
| lineage4 | 1 |
| lineage2.2 | 1 |
| M.canetti;lineage4.9 | 2 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.3.4.2.1 | 3 |
| lineage3 | 1 |
| La1.8.1 | 1 |
| lineage4.3.3 | 2 |
| lineage4.1.2 | 1 |
| lineage1.1.2 | 2 |
| lineage4.6.2.2 | 2 |
| La2;M.canetti | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| 1 | |
| lineage4.1.2.1 | 3 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.8 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage3.1 | 1 |
| lineage2.2.1;lineage4 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.4.1.1.1 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 194 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9787336 | RR-TB | lineage6.1.3 | None | SRR5818567 | Other | M.canetti | dj | SRR1159378 | Other | lineage4.9 | None | SRR6650709 | Sensitive | M.canetti | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR1336824 | Sensitive | La3;M.canetti | None | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR266110 | Other | M.canetti | None | ERR216965 | Sensitive | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | ERR4816964 | Sensitive | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | ERR552307 | Sensitive | M.canetti | None | ERR551057 | Other | M.canetti | None | SRR10315567 | HR-TB | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR3273109 | HR-TB | lineage4 | None | SRR18289196 | Sensitive | M.canetti | None | ERR266120 | Sensitive | M.canetti | None | ERR751326 | Other | lineage4.9 | None | ERR3597007 | Sensitive | M.canetti | None | ERR551181 | Sensitive | M.canetti | None | SRR16058674 | Other | M.canetti | None | ERR9125475 | Other | M.canetti | None | ERR4816019 | Sensitive | M.canetti | None | ERR266109 | Sensitive | M.canetti | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR10177258 | Other | M.canetti | None | ERR551182 | Sensitive | M.canetti | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR552306 | Sensitive | M.canetti;lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR266124 | Other | M.canetti | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR1043164 | Other | La3;M.canetti | None | SRR9971112 | Other | lineage2.2.1 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR551180 | Sensitive | M.canetti | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR11465333 | Sensitive | lineage4.3.4.2.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | SRR10177262 | Sensitive | M.canetti | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR1043163 | Other | La3;M.canetti | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | SRR5818668 | Sensitive | M.canetti | dj | SRR5818685 | Sensitive | M.canetti | None | SRR7236177 | Other | La1.8.1 | None | ERR551179 | Sensitive | M.canetti | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR3597001 | Sensitive | M.canetti | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR1336822 | Sensitive | M.canetti | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | ERR552304 | Sensitive | M.canetti | None | ERR502511 | Sensitive | lineage4.9 | None | ERR266107 | Other | M.canetti | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR5818614 | Sensitive | M.canetti | dj | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR551056 | Sensitive | M.canetti | None | ERR266108 | Sensitive | M.canetti | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | SRR10522783 | Sensitive | M.canetti | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR313115 | Other | M.canetti | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR266106 | Sensitive | M.canetti | None | SRR18289195 | Sensitive | M.canetti | None | SRR5818652 | Sensitive | M.canetti | dj | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR7451300 | Sensitive | M.canetti | None | SRR5341453 | Other | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR5341308 | Sensitive | lineage4.9 | None | ERR7451301 | Sensitive | M.canetti | None | SRR5818676 | Other | M.canetti | dj | SRR24061598 | Sensitive | M.canetti | None | SRR5341467 | Other | lineage4.9 | None | SRR10177260 | Other | M.canetti | None | SRR3675585 | Sensitive | lineage4.9 | None | SRR28170812 | Sensitive | M.canetti | None | SRR5818605 | Other | M.canetti | None | SRR1238558 | Other | lineage4.9 | None | ERR1336826 | Sensitive | La3;M.canetti | None | ERR13265708 | Sensitive | lineage2.2.1 | None | ERR473334 | HR-TB | lineage4.9 | None | SRR1180996 | Sensitive | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | ERR4817181 | Sensitive | M.canetti | None | ERR3597003 | Sensitive | M.canetti | None | SRR22179528 | Sensitive | M.canetti | None | SRR29231479 | RR-TB | lineage4.9 | None | ERR313114 | Sensitive | M.canetti | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR24061597 | Sensitive | M.canetti | None | SRR6045217 | Sensitive | lineage4.9 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | SRR7535082 | Sensitive | lineage4.9 | None | ERR266126 | Sensitive | La2;M.canetti | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR9786597 | Other | lineage4.6.2.2 | None | SRR26399239 | Sensitive | lineage4.9 | None | ERR4821046 | Sensitive | M.canetti | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | ERR1063896 | Sensitive | None | SRR1238559 | Other | lineage4.9 | None | ERR3597004 | Sensitive | M.canetti | None | SRR10522763 | Sensitive | M.canetti | None | SRR16058668 | Sensitive | M.canetti | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR551055 | Sensitive | M.canetti | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4815361 | Other | M.canetti | None | SRR9613550 | HR-TB | lineage4.1.2.1 | None | SRR5341310 | Other | lineage1.1.2 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR10177261 | Sensitive | M.canetti | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | SRR10177259 | Other | M.canetti | None | ERR4799025 | Other | lineage4.8 | None | ERR313113 | Other | M.canetti | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR3597002 | Other | M.canetti | None | ERR1336825 | Sensitive | La3;M.canetti | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR3597006 | Other | La3;M.canetti | None | ERR124636 | Sensitive | lineage4.9 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR9125480 | Sensitive | M.canetti | None | ERR313117 | Other | M.canetti | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR6511621 | Sensitive | lineage4.9 | None | SRR5818653 | Sensitive | M.canetti | dj | ERR3283032 | Other | lineage4.9 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR1336820 | Sensitive | La3;M.canetti | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR10177263 | Sensitive | M.canetti | None | SRR5818661 | Other | M.canetti | dj | ERR552305 | Sensitive | M.canetti | None | SRR28351442 | HR-TB | lineage3.1 | None | ERR1336821 | Sensitive | La3;M.canetti | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR28351342 | HR-TB | lineage2.2.1;lineage4 | None | ERR4818536 | Other | lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR1336823 | Sensitive | La3;M.canetti | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR266121 | Sensitive | M.canetti | None | SRR24061599 | Sensitive | M.canetti | None | SRR24061600 | Sensitive | M.canetti | None | ERR266122 | Sensitive | La3;M.canetti | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR4815471 | Sensitive | lineage4.9 | None | ERR3597005 | Sensitive | M.canetti | None | ERR323062 | Sensitive | lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | ERR313116 | Sensitive | M.canetti | None | ERR4819927 | Sensitive | M.canetti | None | ERR137286 | Other | lineage4.9 | None | ERR266125 | Other | La3;M.canetti | None | ERR323066 | Sensitive | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None |
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