Rv0668 - c.2502T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
56 Sensitive
5 RR-TB
44 HR-TB
13 MDR-TB
6 Pre-XDR-TB
1 XDR-TB
61 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 92 |
| La1.7;M.canetti;lineage4.9 | 3 |
| La1.7;lineage4.9;lineage6 | 1 |
| La1.7 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La3;lineage2.1;lineage4.9 | 1 |
| 2 | |
| lineage2.2.1 | 12 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La1.7;lineage4.9 | 6 |
| La1.8.1 | 3 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.9;lineage7 | 4 |
| lineage4.3.4.2.1 | 1 |
| La1.2 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.6.2.2 | 1 |
| lineage1.1.2 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.3.4.2 | 1 |
| La1;lineage4.9 | 3 |
| lineage5.2 | 2 |
| lineage4 | 3 |
| lineage4.4.1.1.1 | 1 |
| lineage2.2.1;lineage3;lineage4 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.1.1.3 | 2 |
| lineage1.1.3.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.1.2 | 2 |
| M.canetti;lineage4.9 | 2 |
| M.canetti;lineage2.1 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La3;lineage4.9 | 5 |
| lineage3.1;lineage9 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.8 | 2 |
| lineage4.2.1 | 1 |
| lineage1.1.3.2 | 1 |
| lineage3 | 2 |
| lineage4.3.3 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.8;lineage4.9 | 2 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.5 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage6.1.3 | 1 |
| lineage1.1.1 | 1 |
| lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 186 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR29096203 | Sensitive | lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | ERR4796254 | Sensitive | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR323066 | Sensitive | lineage4.9 | None | SRR3675222 | Other | La1.7 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR387051 | Other | lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR1063896 | Sensitive | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR3797083 | RR-TB | lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | SRR5341455 | Sensitive | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR13285068 | Sensitive | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | SRR29096425 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4769427 | Other | La1.2 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR3283016 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | SRR10808399 | Sensitive | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR3273109 | HR-TB | lineage4 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR29096717 | Sensitive | lineage4.9 | None | SRR29097023 | Sensitive | lineage4.9 | None | SRR5431730 | Other | La1.8.1 | None | SRR25827605 | Pre-XDR-TB | lineage2.2.1;lineage3;lineage4 | None | ERR4816478 | HR-TB | lineage4 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR5341453 | Other | lineage4.9 | None | SRR13591342 | HR-TB | lineage4.1.1.3 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR6046594 | Sensitive | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR4816656 | Other | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675441 | Other | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | ERR176751 | Other | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR1173777 | Sensitive | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR29096166 | Sensitive | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR323041 | HR-TB | M.canetti;lineage2.1 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR3675554 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | SRR1158918 | Sensitive | lineage4.9 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR502511 | Sensitive | lineage4.9 | None | SRR1159378 | Other | lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR4830353 | Other | La1.7 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR5341366 | Sensitive | lineage4.9 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | SRR14801749 | HR-TB | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR6511621 | Sensitive | lineage4.9 | None | SRR3675280 | RR-TB | lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR29096107 | Sensitive | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4799378 | Sensitive | lineage4.9 | None | SRR28868888 | Other | lineage1.1.3.2 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR29096246 | Sensitive | La1.7;lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | SRR28351339 | MDR-TB | lineage4 | None | ERR212033 | Other | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR7535082 | Sensitive | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR1169249 | Other | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR400529 | Other | lineage3 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR752229 | Other | lineage4.5 | None | SRR3675582 | Other | lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR751326 | Other | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR12006550 | Sensitive | None | SRR5341303 | Sensitive | lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR4819877 | HR-TB | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9971113 | Other | lineage2.2.1 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR3675312 | Sensitive | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None |
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