lineage | Count |
---|---|
lineage4 | 61 |
157 | |
lineage2.2.1 | 15 |
lineage4.9 | 42 |
lineage4.1.2.1 | 4 |
lineage3 | 4 |
lineage4.9;lineage2.1 | 1 |
lineage1.1 | 1 |
lineage3.1 | 2 |
lineage2.2 | 6 |
lineage4.3.4.1 | 1 |
La2 | 1 |
lineage4.1.2 | 2 |
lineage4.8 | 2 |
lineage4.3.2.1 | 1 |
lineage4.3.3 | 3 |
La1 | 2 |
La1.8.1 | 3 |
lineage4.6.2.2 | 2 |
lineage4;lineage3.1 | 1 |
La1.2 | 1 |
lineage3.1.2 | 1 |
lineage4.5 | 3 |
lineage2.2.2 | 2 |
lineage4.6.1.1 | 1 |
lineage4.1.2.1.1 | 1 |
lineage4.3.2 | 2 |
lineage4.3.4.2 | 1 |
lineage6.3.1 | 1 |
lineage6.1.3 | 1 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
La3 | 1 |
lineage2.2.1.1 | 2 |
lineage4.4.1.1.1 | 1 |
lineage4.9;lineage2.2 | 1 |
lineage1.2.1.2 | 1 |
La1.7.1 | 1 |
lineage4.1 | 3 |
lineage9;lineage3.1 | 1 |
lineage4.9;lineage4.6.3 | 1 |
lineage4.1.1.3 | 2 |
lineage4.3.4.2.1 | 2 |
lineage4.3.4 | 1 |
lineage3;lineage2.1 | 1 |
lineage2.1 | 1 |
lineage4.3 | 1 |
lineage4.1.1 | 1 |
lineage4.1.1.2 | 1 |
lineage5.1.4 | 1 |
spoligotype | Count |
---|---|
None | 349 |
ID | Drug resistance | Lineage | Country iso2 | SRR5341299 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | ERR1023509 | Other | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341330 | HR-TB | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR2693231 | Other | None | ERR2693238 | HR-TB | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341467 | Other | lineage4 | None | SRR5341470 | HR-TB | None | SRR5341469 | Other | lineage4 | None | ERR278594 | HR-TB | None | ERR4821053 | Other | lineage3 | None | ERR2693239 | HR-TB | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR2693230 | Other | None | ERR2693254 | Other | None | ERR2693257 | Other | None | SRR6045519 | HR-TB | None | SRR6046141 | Other | lineage4.9 | None | ERR4821655 | Sensitive | lineage4 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6044838 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045399 | Other | None | SRR6045053 | Other | None | SRR6045217 | Other | lineage4 | None | SRR6045233 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046299 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046362 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046397 | Other | None | ERR4830353 | Other | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046492 | Other | None | SRR6046482 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6511621 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6325442 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | ERR3077978 | Other | lineage1.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | ERR294248 | HR-TB | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | ERR294266 | HR-TB | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR323036 | HR-TB | None | ERR502889 | Other | None | ERR502524 | HR-TB | La2 | None | SRR7496509 | Other | None | ERR5311099 | HR-TB | None | ERR323038 | HR-TB | None | ERR5311090 | HR-TB | None | ERR5311081 | HR-TB | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9970979 | Sensitive | lineage4.8 | None | ERR323039 | HR-TB | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR323041 | HR-TB | None | ERR323055 | HR-TB | None | ERR323053 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | ERR323066 | Sensitive | lineage4 | None | ERR1063883 | Sensitive | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR323107 | Other | lineage4 | None | ERR067681 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR067699 | HR-TB | lineage4 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1034652 | Other | None | ERR1035122 | Sensitive | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063857 | HR-TB | None | ERR3283014 | HR-TB | None | ERR133825 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283010 | Other | La1 | None | ERR1063896 | Sensitive | None | ERR108471 | HR-TB | lineage4 | None | ERR133986 | HR-TB | None | ERR137286 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3283017 | HR-TB | None | ERR3283028 | Other | None | ERR3283021 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283024 | Other | None | ERR3283031 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283027 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3283036 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283047 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3439432 | Other | None | ERR3445501 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR3797014 | Other | None | ERR3797016 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3797017 | Other | None | ERR3797048 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797044 | Other | None | ERR3797069 | Other | None | ERR3797060 | Other | La1.8.1 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797061 | Other | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797063 | HR-TB | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR3797064 | Sensitive | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3797086 | Other | lineage4.9 | None | ERR400345 | Other | lineage4 | None | ERR387051 | HR-TB | None | ERR400320 | Sensitive | lineage4 | None | ERR4024991 | Other | None | ERR403298 | HR-TB | lineage4 | None | ERR5336148 | Other | None | ERR405209 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4769452 | HR-TB | None | ERR4188350 | HR-TB | None | ERR473323 | HR-TB | lineage4.9 | None | ERR473332 | Other | lineage4 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769450 | HR-TB | None | ERR4796929 | Sensitive | lineage4 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769521 | HR-TB | None | ERR4796254 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797474 | Other | None | ERR4797264 | Sensitive | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4798406 | HR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798099 | Other | None | ERR4798262 | HR-TB | La1 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4811030 | Sensitive | None | ERR4812155 | Sensitive | None | ERR5908228 | Other | lineage4.3.3 | None | ERR6358837 | HR-TB | None | ERR5987372 | Pre-XDR-TB | lineage2.2.2 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6358991 | HR-TB | None | ERR6358979 | Other | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866022 | Other | None | ERR6866410 | Sensitive | None | ERR736834 | Sensitive | lineage4 | None | ERR702404 | HR-TB | None | ERR6866639 | Other | None | ERR6866807 | HR-TB | lineage4 | None | ERR736837 | Other | lineage4.9 | None | ERR736839 | Other | None | ERR736835 | HR-TB | None | ERR736867 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR736865 | HR-TB | None | ERR752229 | Other | lineage4.5 | None | ERR736872 | Sensitive | lineage4 | None | ERR751326 | Sensitive | lineage4 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR8976043 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR9117709 | HR-TB | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9119669 | HR-TB | None | ERR9786346 | Sensitive | lineage4.3.4.2 | None | ERR9786843 | Other | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR987722 | HR-TB | None | ERR990545 | Other | lineage3 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR1158918 | Sensitive | lineage4 | None | SRR10808805 | Sensitive | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1169306 | Other | None | SRR1167384 | Other | lineage4 | None | SRR1169249 | Other | La3 | None | SRR1172310 | HR-TB | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1174897 | HR-TB | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1183049 | Other | lineage2.2 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR13861163 | Sensitive | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR1640750 | HR-TB | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR3675502 | Other | None | ERR4815604 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR19303884 | HR-TB | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR3675477 | Other | lineage4.9 | None | ERR1035239 | HR-TB | None | SRR3675465 | HR-TB | None | SRR6325445 | HR-TB | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR3675482 | HR-TB | None | ERR158583 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR161033 | HR-TB | None | SRR3675488 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675234 | Other | None | SRR3675486 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675501 | HR-TB | None | SRR3675236 | HR-TB | None | ERR181744 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675229 | Other | lineage4 | None | SRR3675247 | Other | lineage4.9 | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675246 | Sensitive | lineage4 | None | ERR176568 | Other | lineage4.3 | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675279 | Other | None | SRR3675284 | HR-TB | lineage4.9 | None | SRR3675387 | Sensitive | None | ERR176643 | HR-TB | None | SRR3675311 | Other | None | SRR3675383 | HR-TB | None | SRR3675456 | HR-TB | None | SRR3675455 | Sensitive | lineage4 | None | ERR176751 | HR-TB | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675510 | Other | None | ERR212123 | Other | None | ERR212033 | HR-TB | None | ERR212034 | HR-TB | None | SRR3675558 | HR-TB | None | SRR3675522 | Other | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675547 | Other | lineage4.9 | None | SRR3675545 | HR-TB | None | ERR212001 | HR-TB | None | SRR3675550 | Other | None | SRR3675555 | HR-TB | None | ERR212121 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | SRR3675571 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR2229702 | Other | lineage4.8 | None | ERR4816656 | HR-TB | None | ERR2229143 | Other | lineage4.1.1 | None | ERR2446566 | Other | lineage4.1 | None | ERR1035162 | Other | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4818021 | Other | La1.8.1 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR2513283 | Other | lineage5.1.4 | None | ERR4818929 | HR-TB | None | SRR5341456 | Other | None | ERR4818536 | Other | lineage4.9 | None | ERR4818615 | Other | None | SRR5341387 | Other | lineage4 | None | SRR5341396 | Other | lineage4 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR4819462 | Other | lineage4 | None | ERR1035138 | MDR-TB | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341418 | Other | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341300 | Other | lineage4 | None |
---|