Rv3596c - c.1515C>G
Drug resistance types
84 Sensitive
6 RR-TB
101 HR-TB
20 MDR-TB
7 Pre-XDR-TB
0 XDR-TB
76 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.1.2 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage3 | 10 |
| lineage4 | 47 |
| lineage2.2.1 | 25 |
| lineage4.6.2.2 | 1 |
| 74 | |
| lineage1.1.2 | 3 |
| lineage4.9;lineage2.1 | 1 |
| lineage4.8 | 3 |
| lineage4.9 | 52 |
| lineage4.1.2.1 | 16 |
| lineage4.6.1 | 1 |
| lineage1.1 | 1 |
| lineage4.1 | 2 |
| lineage2.2.1.1 | 5 |
| lineage3.1 | 2 |
| La2 | 1 |
| lineage4.1.2 | 2 |
| lineage4.3.2.1 | 1 |
| lineage4.3.3 | 1 |
| lineage4.1.1.3 | 3 |
| La1 | 2 |
| La1.8.1 | 3 |
| lineage6.1.1 | 2 |
| lineage3.1.2 | 1 |
| lineage4.8;La3 | 2 |
| lineage4.9.1 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage4.3.2 | 1 |
| lineage1.1.3.1 | 1 |
| lineage6.3.1 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.6.1.1 | 1 |
| lineage6.1.3 | 1 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.9;lineage2.2 | 1 |
| lineage2.2 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage2 | 2 |
| lineage4.5 | 2 |
| lineage4.9;La3 | 1 |
| lineage6.3;lineage2.2.1 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage6.3;lineage4.9;lineage2.1 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage3;lineage2.1 | 1 |
| lineage1.2.1.1 | 1 |
| lineage2.1 | 1 |
| lineage3.1.3 | 1 |
| lineage4;lineage2 | 1 |
| lineage4;lineage1.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 294 |
Geographic prevalence
Country level data for this variant is available for 7 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4818252 | Other | lineage4.1.1.2 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR3275220 | Other | lineage3 | nl | SRR5341387 | Other | lineage4 | None | ERR2509673 | Other | lineage2.2.1 | None | ERR3275709 | HR-TB | lineage3 | nl | SRR5341461 | Sensitive | lineage4 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341425 | Other | lineage4 | None | SRR5341395 | Sensitive | lineage3 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341432 | HR-TB | lineage4 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341302 | HR-TB | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341313 | HR-TB | None | SRR5341315 | Sensitive | None | SRR5341467 | Other | lineage4 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341470 | HR-TB | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR5341469 | Other | lineage4 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR6325442 | HR-TB | None | ERR4821053 | Other | lineage3 | None | ERR2693239 | HR-TB | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6045892 | Sensitive | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045952 | HR-TB | None | SRR6045473 | Sensitive | lineage3 | None | ERR2446144 | Other | lineage3 | nl | ERR4821655 | Sensitive | lineage4 | None | ERR2517528 | Other | lineage3 | nl | SRR6046382 | HR-TB | lineage2.2.1 | None | ERR278594 | HR-TB | None | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | SRR6325444 | HR-TB | None | ERR4830353 | Other | None | SRR6046514 | HR-TB | None | ERR323036 | HR-TB | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6325448 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6511621 | HR-TB | None | ERR3078008 | MDR-TB | lineage4.6.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR502510 | Sensitive | lineage4 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR294248 | HR-TB | None | ERR502524 | HR-TB | La2 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR5311090 | HR-TB | None | ERR5311081 | HR-TB | None | SRR9971270 | RR-TB | lineage2.2.1 | None | ERR5311099 | HR-TB | None | SRR9970980 | Other | lineage4.1.2 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR9971113 | Other | lineage2.2.1 | None | ERR323038 | HR-TB | None | ERR323039 | HR-TB | None | ERR323041 | HR-TB | None | ERR323053 | HR-TB | None | ERR323055 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR1035122 | Sensitive | None | ERR323066 | Sensitive | lineage4 | None | ERR11465025 | Other | lineage4.1.1.3 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1034652 | Other | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | ERR323085 | Sensitive | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR1023525 | HR-TB | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR11465024 | Other | lineage4.1.1.3 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR137286 | Sensitive | lineage4 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR323115 | Sensitive | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283017 | HR-TB | None | ERR3283021 | HR-TB | None | ERR4821179 | Other | lineage4.1.2.1 | gb | ERR3283040 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3797016 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797019 | Other | La1.8.1 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797082 | Other | lineage4.9 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR387051 | HR-TB | None | ERR4024991 | Other | None | ERR4796577 | MDR-TB | None | ERR4407463 | HR-TB | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4797474 | Other | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4798262 | HR-TB | La1 | None | ERR4798099 | Other | None | ERR4799378 | Sensitive | lineage4 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4798504 | Other | lineage3 | None | ERR4811105 | HR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR12015083 | Other | lineage4.8;La3 | None | ERR6358837 | HR-TB | None | ERR6866639 | Other | None | ERR6358979 | Other | None | ERR6866022 | Other | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR6866410 | Sensitive | None | ERR6866547 | Sensitive | lineage4 | None | ERR245758 | Other | lineage4.9.1 | None | ERR736856 | HR-TB | lineage4 | None | ERR736834 | Sensitive | lineage4 | None | ERR736874 | HR-TB | None | ERR736865 | HR-TB | None | ERR736872 | Sensitive | lineage4 | None | ERR751326 | Sensitive | lineage4 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | SRR21732954 | Sensitive | lineage4.9 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR8976043 | HR-TB | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR987733 | RR-TB | lineage4.6.1.1 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR987722 | HR-TB | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR10808399 | Sensitive | lineage4 | None | SRR10808805 | Sensitive | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1172234 | Other | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1172214 | HR-TB | lineage4.9 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1169194 | Other | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1172310 | HR-TB | None | SRR1173777 | Other | lineage4 | None | SRR1172717 | Other | lineage4.9 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1173568 | Other | lineage4.9 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1174897 | HR-TB | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR12142341 | HR-TB | None | SRR13837631 | Sensitive | lineage4.9 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13861322 | Other | lineage4.9 | None | SRR13861397 | HR-TB | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR13861671 | Sensitive | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR13861564 | Sensitive | lineage4.9 | None | SRR13861573 | Other | lineage4.9 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR14801749 | Sensitive | None | SRR1640750 | HR-TB | None | SRR17832802 | HR-TB | lineage3 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR1791747 | Other | La1.8.1 | None | SRR20969677 | HR-TB | lineage2 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR3675488 | HR-TB | None | SRR3675482 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR161033 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675486 | HR-TB | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR3675222 | Other | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675555 | HR-TB | None | SRR3675501 | HR-TB | None | SRR3675383 | HR-TB | None | ERR176740 | HR-TB | None | SRR3675545 | HR-TB | None | SRR3675456 | HR-TB | None | ERR4816466 | HR-TB | None | SRR3675558 | HR-TB | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR3742665 | HR-TB | None | ERR502912 | Other | lineage2.2.1 | None | ERR4816738 | Sensitive | lineage4.9 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | ERR3275196 | Other | lineage2.2.1 | nl |
|---|
