Rv3596c - c.1353C>T
Drug resistance types
88 Sensitive
8 RR-TB
19 HR-TB
15 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
61 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti | 66 |
| lineage4.3.4.2 | 6 |
| La3;M.canetti | 10 |
| M.canetti;lineage4.6.4;lineage4.9 | 2 |
| lineage4.9 | 41 |
| lineage2.2.1 | 11 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| lineage6.1.3 | 1 |
| La3;lineage4.9 | 9 |
| lineage4.3.2.1 | 2 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage4.8;lineage4.9 | 2 |
| La1.7;lineage4.9 | 2 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| lineage4.6.4;lineage4.9 | 1 |
| lineage4.1;lineage4.8 | 2 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.3.3 | 1 |
| La3;lineage4 | 1 |
| lineage4.1.2 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.6.2.2 | 3 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 1 |
| M.canetti;lineage4.2 | 1 |
| lineage4 | 2 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| La1.8.1 | 1 |
| La2;M.canetti | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| 3 | |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| lineage4.9.1 | 1 |
| lineage1.1.2 | 1 |
| M.canetti;lineage1 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 192 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR24061597 | Sensitive | M.canetti | None | SRR26112461 | Sensitive | lineage4.3.4.2 | None | SRR24061599 | Sensitive | M.canetti | None | SRR24061600 | Sensitive | M.canetti | None | ERR266122 | Sensitive | La3;M.canetti | None | SRR3675586 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | ERR313116 | Sensitive | M.canetti | None | ERR4819927 | Sensitive | M.canetti | None | ERR551179 | Sensitive | M.canetti | None | SRR9971114 | Other | lineage2.2.1 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | SRR5818567 | Other | M.canetti | dj | ERR502511 | Sensitive | lineage4.9 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR1159378 | Other | lineage4.9 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR1336824 | Sensitive | La3;M.canetti | None | ERR551056 | Sensitive | M.canetti | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | SRR3675446 | RR-TB | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR3597002 | Other | M.canetti | None | ERR400345 | Other | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR266120 | Sensitive | M.canetti | None | ERR751326 | Other | lineage4.9 | None | ERR13285191 | Sensitive | lineage4.9 | None | ERR8975532 | HR-TB | lineage4.3.2.1 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR10177263 | Sensitive | M.canetti | None | ERR7451301 | Sensitive | M.canetti | None | ERR3797065 | RR-TB | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | ERR266124 | Other | M.canetti | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | ERR1336826 | Sensitive | La3;M.canetti | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR3675390 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | ERR3597003 | Sensitive | M.canetti | None | ERR4188322 | Other | lineage4.6.4;lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | ERR9786525 | Other | lineage4.1;lineage4.8 | None | SRR5818685 | Sensitive | M.canetti | None | ERR13285192 | Sensitive | lineage4.9 | None | ERR3597005 | Sensitive | M.canetti | None | ERR137286 | Other | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4821046 | Sensitive | M.canetti | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR3283028 | Other | La3;lineage4 | None | ERR552304 | Sensitive | M.canetti | None | ERR266107 | Other | M.canetti | None | ERR551055 | Sensitive | M.canetti | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR5818614 | Sensitive | M.canetti | dj | ERR4815361 | Other | M.canetti | None | SRR6650709 | Sensitive | M.canetti | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR10177261 | Sensitive | M.canetti | None | ERR266108 | Sensitive | M.canetti | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | SRR10177259 | Other | M.canetti | None | SRR5341425 | Other | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | SRR10522783 | Sensitive | M.canetti | None | ERR313113 | Other | M.canetti | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR552307 | Sensitive | M.canetti | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR9786526 | Other | lineage4.1;lineage4.8 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR11662694 | Other | lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3597006 | Other | La3;M.canetti | None | ERR124636 | Sensitive | lineage4.9 | None | ERR266106 | Sensitive | M.canetti | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR18289195 | Sensitive | M.canetti | None | SRR5818653 | Sensitive | M.canetti | dj | ERR3597007 | Sensitive | M.canetti | None | ERR551181 | Sensitive | M.canetti | None | SRR16058674 | Other | M.canetti | None | SRR29690803 | RR-TB | lineage4.3.4.2 | None | ERR9125475 | Other | M.canetti | None | ERR4816019 | Sensitive | M.canetti | None | ERR266109 | Sensitive | M.canetti | None | SRR5341453 | Other | lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR10177258 | Other | M.canetti | None | SRR5818661 | Other | M.canetti | dj | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR552305 | Sensitive | M.canetti | None | SRR5341308 | Sensitive | lineage4.9 | None | ERR552306 | Sensitive | M.canetti;lineage4.9 | None | SRR10177260 | Other | M.canetti | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | ERR11081313 | Sensitive | lineage4.3.4.2 | None | SRR10177262 | Sensitive | M.canetti | None | SRR28683944 | RR-TB | lineage4.3.4.2 | None | SRR28351488 | MDR-TB | lineage2.2.1 | None | SRR28351339 | MDR-TB | lineage4 | None | ERR4817181 | Sensitive | M.canetti | None | ERR3797087 | Sensitive | lineage4.9 | None | SRR22179528 | Sensitive | M.canetti | None | SRR6832787 | Sensitive | lineage2.2.1 | None | ERR1336823 | Sensitive | La3;M.canetti | None | ERR313114 | Sensitive | M.canetti | None | ERR266121 | Sensitive | M.canetti | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | ERR3439432 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | ERR266126 | Sensitive | La2;M.canetti | None | ERR323062 | Sensitive | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR26399239 | Sensitive | lineage4.9 | None | ERR3597001 | Sensitive | M.canetti | None | ERR1336822 | Sensitive | M.canetti | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR1063896 | Sensitive | None | ERR3597004 | Sensitive | M.canetti | None | SRR10522763 | Sensitive | M.canetti | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR16058668 | Sensitive | M.canetti | None | ERR245758 | Other | lineage4.9.1 | None | SRR29881210 | Sensitive | lineage4.3.4.2 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR266110 | Other | M.canetti | None | ERR1336825 | Sensitive | La3;M.canetti | None | ERR313115 | Other | M.canetti | None | ERR551057 | Other | M.canetti | None | SRR10315567 | HR-TB | lineage2.2.1 | None | ERR9125480 | Sensitive | M.canetti | None | ERR313117 | Other | M.canetti | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR3273109 | HR-TB | lineage4 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR18289196 | Sensitive | M.canetti | None | SRR5818652 | Sensitive | M.canetti | dj | ERR7451300 | Sensitive | M.canetti | None | ERR1336820 | Sensitive | La3;M.canetti | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR24061598 | Sensitive | M.canetti | None | ERR1336821 | Sensitive | La3;M.canetti | None | ERR551182 | Sensitive | M.canetti | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR1043164 | Other | La3;M.canetti | None | SRR28170812 | Sensitive | M.canetti | None | SRR5818605 | Other | M.canetti | None | SRR9971112 | Other | lineage2.2.1 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR551180 | Sensitive | M.canetti | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR9786843 | Other | None | ERR1043163 | Other | La3;M.canetti | None | SRR28357668 | Other | lineage4.3.4.2 | None | ERR212001 | HR-TB | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR5818668 | Sensitive | M.canetti | dj |
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