Rv3596c - c.963C>T


Drug resistance types
80 Sensitive 22 RR-TB 81 HR-TB 34 MDR-TB 13 Pre-XDR-TB 0 XDR-TB 70 Other
lineage Counts
lineage Count
lineage4.9 148
lineage2.2.2 12
lineage4.3.3 5
La1.8.1 2
lineage4.3.1;lineage4.9;lineage6 1
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
lineage2.2.1 23
La1;lineage4.1.2 1
lineage2.2.1;lineage4.9 2
lineage4.3.4.1 1
lineage4.3.4.2.1 3
La1.4 1
lineage2;lineage4 1
lineage4.1;lineage4.9 1
La1.7;lineage4.9 2
lineage4.8;lineage4.9 2
lineage1.1.1;lineage4 1
lineage3 6
lineage5.1.4 1
lineage1.1.3.1 1
lineage4.8.1 2
La1.6 1
lineage4.2.1.1;lineage4.3.3 1
lineage4.4.1.1.1 1
lineage4.3.4.2 2
lineage4.4.2 1
lineage4.1.2.1 4
lineage2.2.1.1 3
La1.3 1
lineage4 4
lineage4.9;lineage6.1.3 1
lineage1.1.2 2
La1.7;M.canetti;lineage4.9 3
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage1;lineage4.9 1
lineage4.9;lineage9 2
lineage4.5 2
La1;lineage4.9 1
lineage4.9;lineage6.3 3
lineage4.8 1
La2;lineage4.9 1
lineage4.3.2.1 3
lineage4.1.2.1;lineage4.4.1.1 1
La3;lineage2.1;lineage4.9;lineage6.3 1
La1.7;lineage3;lineage4.9;lineage7 1
lineage3;lineage4.9 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
4
lineage3.1 1
La1.7;lineage4.9;lineage6 1
lineage6.1.1 2
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
lineage4.1.2 1
La3;M.canetti;lineage4.9 1
lineage4.1.1.1 1
La1.7;lineage4.9;lineage7 3
lineage6.1.3 1
lineage2.2.1;lineage4 2
La3;lineage4.9 1
M.canetti;lineage4.9 1
lineage3.1.2.2 1
La2;lineage4.9;lineage9 1
lineage4.1.1.3 2
lineage4.4.1.1 2
lineage4.2.1 3
lineage4.4.1.2 1
lineage4.7 1
lineage1.2.1.1 1
lineage4.6.3;lineage4.9 1
lineage3.1.2.1;lineage3.1.2.2 1
M.canetti;lineage1 1
lineage1.2.2.2 1
lineage4.3.2;lineage4.9 1
lineage2;lineage4.9 1
spoligotype Counts
spoligotype Count
None 300
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR12708384 Sensitive lineage4.9 None
SRR6824567 MDR-TB lineage2.2.2 cn
SRR12708409 HR-TB lineage4.3.3 None
SRR10809074 HR-TB lineage4.9 None
ERR4819462 Sensitive lineage4.9 None
ERR6359069 HR-TB lineage4.9 None
SRR12416842 HR-TB lineage4.9 None
ERR3468488 Other La1.8.1 None
ERR4769444 HR-TB lineage4.9 None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
SRR5341437 Sensitive lineage4.9 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
SRR1180444 Sensitive lineage4.9 None
ERR4797313 Sensitive lineage2.2.1 None
SRR16156775 Other lineage4.9 None
SRR10040358 MDR-TB lineage2.2.2 None
SRR9970978 Other La1;lineage4.1.2 None
SRR1184114 Sensitive lineage2.2.1;lineage4.9 None
ERR11465352 Sensitive lineage4.3.4.1 None
ERR323044 HR-TB lineage4.3.4.2.1 None
SRR6045191 Sensitive lineage4.9 None
SRR16278274 Other La1.4 None
ERR1023502 MDR-TB lineage2;lineage4 None
SRR1181390 Sensitive lineage2.2.1;lineage4.9 None
SRR12708374 Sensitive lineage4.1;lineage4.9 None
ERR216938 HR-TB La1.7;lineage4.9 None
ERR736834 HR-TB lineage4.9 None
ERR6866022 HR-TB lineage4.8;lineage4.9 None
ERR1034634 HR-TB lineage4.9 None
ERR4796929 Sensitive lineage4.9 None
ERR4831638 Sensitive lineage1.1.1;lineage4 None
ERR4818110 Sensitive lineage4.9 None
SRR5341412 Pre-XDR-TB lineage3 None
ERR2513283 Sensitive lineage5.1.4 None
SRR6044780 Sensitive lineage4.9 None
SRR1180410 Sensitive lineage4.9 None
ERR473334 HR-TB lineage4.9 None
ERR736856 HR-TB lineage4.9 None
ERR4831620 MDR-TB lineage2.2.1 None
ERR8479578 HR-TB lineage1.1.3.1 None
ERR11252736 Other lineage4.9 None
ERR4797264 HR-TB lineage4.9 None
SRR11342662 MDR-TB lineage4.8.1 None
SRR10993951 RR-TB La1.6 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
SRR20632814 Sensitive lineage4.9 None
ERR4024991 HR-TB lineage4.8;lineage4.9 None
SRR1181215 Sensitive lineage4.4.1.1.1 None
SRR18003004 Pre-XDR-TB lineage2.2.2 None
SRR1181256 Other lineage4.9 None
SRR6046492 Other lineage4.9 None
ERR502481 RR-TB lineage4.9 None
ERR4816964 HR-TB lineage4.9 None
ERR400320 Sensitive lineage4.9 None
SRR1180420 Sensitive lineage4.9 None
SRR20970043 MDR-TB lineage2.2.1 None
SRR1159378 Other lineage4.9 None
SRR18002974 Other lineage2.2.1 None
ERR4769554 RR-TB lineage4.9 None
ERR9786592 Other lineage4.3.4.2 None
SRR15316595 RR-TB lineage4.4.2 None
ERR4798504 RR-TB lineage3 None
SRR1140724 Other lineage2.2.1 None
ERR4821686 Sensitive lineage4.1.2.1 None
SRR18909918 Other lineage2.2.1.1 None
ERR4769433 RR-TB lineage4.9 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
SRR3675455 Sensitive lineage4.9 None
SRR3675473 Sensitive lineage4.9 None
SRR19612359 Pre-XDR-TB lineage2.2.2 None
SRR5153091 HR-TB lineage4.3.3 None
ERR4799547 HR-TB lineage2.2.1 None
ERR216965 Sensitive lineage4.9 None
SRR9971150 RR-TB lineage4.8.1 None
ERR3275709 HR-TB lineage3 nl
SRR5341384 HR-TB lineage4.9 None
SRR12708415 HR-TB lineage2.2.1 None
SRR1181351 Sensitive lineage4.9 None
ERR4769514 Other La1.3 None
ERR400345 Other lineage4.9 None
ERR4831863 HR-TB lineage2.2.1.1 None
ERR4798823 HR-TB lineage4 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
SRR5341310 Other lineage1.1.2 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
SRR1181349 Sensitive lineage4 None
SRR6046397 RR-TB M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR4797350 Sensitive lineage1;lineage4.9 None
SRR1181283 Sensitive lineage4.9 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
ERR4811031 Other lineage4.5 None
SRR12708370 Pre-XDR-TB lineage2.2.2 None
SRR3675580 Sensitive lineage4.9 None
ERR502478 RR-TB lineage4.9 None
SRR3675477 Sensitive lineage4.9 None
SRR6511621 HR-TB lineage4.9 None
SRR10808805 Other La1;lineage4.9 None
ERR502524 MDR-TB lineage4.9;lineage6.3 None
ERR1035122 HR-TB lineage4.9 None
SRR6046210 Other lineage4.9 None
SRR3675235 HR-TB lineage4.9 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR4829530 Pre-XDR-TB lineage4.8 None
SRR1180250 Other lineage4.9 None
ERR4796254 Other lineage4.9 None
ERR323039 MDR-TB La2;lineage4.9 None
SRR12708396 MDR-TB lineage4.3.2.1 None
ERR323108 HR-TB La1.7;lineage4.9 None
SRR3675387 Other lineage4.9 None
SRR1049726 Other lineage4.1.2.1;lineage4.4.1.1 None
ERR4831621 MDR-TB lineage2.2.1.1 None
SRR3675514 Sensitive lineage4.9 None
SRR21677886 Sensitive lineage4.9 None
SRR1175512 Sensitive lineage4.9 None
SRR13423548 Pre-XDR-TB lineage2.2.2 None
ERR4797184 HR-TB lineage4.9 None
SRR1158918 Other lineage4.9 None
ERR369156 Sensitive lineage4.9 None
SRR3675247 Other lineage4.9 None
ERR3283040 HR-TB lineage4.9 None
ERR5311094 HR-TB lineage4.9 None
ERR4819383 RR-TB lineage4.9 None
SRR5341425 Other lineage4.9 None
SRR21277259 Pre-XDR-TB lineage2.2.2 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
ERR502510 HR-TB lineage4.9 None
SRR6045892 Sensitive lineage4.9 None
SRR12708419 Other lineage4.3.3 None
SRR5341396 Other lineage3;lineage4.9 None
SRR2010299 MDR-TB lineage2.2.1 None
SRR1175506 Sensitive lineage4.9 None
ERR4819863 RR-TB lineage4.9 None
ERR2026697 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR5341319 Other lineage3 None
SRR5341469 HR-TB lineage4.9 None
SRR5341456 Other lineage4.9 None
ERR1063896 HR-TB None
SRR28351442 HR-TB lineage3.1 None
SRR12708416 Sensitive None
ERR137286 Other lineage4.9 None
ERR6866547 Other La1.7;lineage4.9;lineage6 None
ERR6358979 HR-TB lineage4.9 None
SRR1180406 Sensitive lineage4.9 None
SRR10315558 RR-TB lineage2.2.1 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
SRR1180300 Sensitive lineage4.9 None
SRR1181403 Other lineage4.9 None
SRR21031685 Pre-XDR-TB lineage2.2.2 None
SRR11342673 RR-TB lineage4.3.4.2 None
ERR369157 Sensitive lineage4.9 None
ERR6359070 Sensitive lineage4.9 None
ERR4798099 HR-TB lineage4.9 None
ERR369151 Other lineage4.9 None
ERR702405 HR-TB lineage4.9 None
ERR9787014 RR-TB lineage6.1.1 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
SRR9970980 HR-TB lineage4.1.2 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
ERR6866639 HR-TB lineage4.9 None
SRR1181402 Sensitive lineage4.9 None
ERR4816466 HR-TB lineage4.9 None
ERR4816322 Other lineage4.9 None
ERR4872322 Pre-XDR-TB lineage2.2.1 None
ERR2513259 Other lineage3 None
SRR11342642 MDR-TB lineage4.1.1.1 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR5341300 HR-TB lineage4.9 None
ERR2026698 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR5341313 Other La1.7;lineage4.9;lineage7 None
SRR21887653 Pre-XDR-TB lineage2.2.2 None
ERR369161 Sensitive lineage4.9 None
SRR12708407 HR-TB lineage4.3.2.1 None
ERR4816762 Sensitive lineage4.9 None
ERR9787256 Other lineage6.1.3 None
ERR4818536 Other lineage4.9 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
ERR3283030 HR-TB lineage4.9 None
ERR1063883 HR-TB lineage4.9 None
SRR1181237 Sensitive lineage2.2.1;lineage4 None
ERR176643 Other La3;lineage4.9 None
SRR12708414 HR-TB lineage2.2.1 None
ERR3799304 RR-TB lineage6.1.1 None
ERR323066 HR-TB lineage4.9 None
SRR11662694 Other lineage4.9 None
SRR6045399 Other M.canetti;lineage4.9 None
SRR12708399 MDR-TB lineage4.3.4.2.1 None
ERR4816470 HR-TB lineage3 None
ERR4798648 MDR-TB lineage3.1.2.2 None
SRR1175508 Sensitive lineage4.9 None
SRR10315567 HR-TB lineage2.2.1 None
ERR400336 Sensitive lineage4.9 None
SRR7496471 Sensitive lineage4 None
ERR4811030 Other lineage4.9 None
SRR5341461 HR-TB lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
ERR400326 Other lineage4.9 None
SRR9971270 RR-TB lineage2.2.1 None
ERR867570 RR-TB lineage4.9 None
SRR5341323 Sensitive lineage4.9 None
ERR3273109 HR-TB lineage4 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
SRR3675585 HR-TB lineage4.9 None
SRR3675522 Other lineage4.9 None
SRR1181325 Sensitive lineage4.9 None
SRR1180355 Sensitive lineage4.9 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
ERR4815471 HR-TB lineage4.9 None
SRR12708413 HR-TB lineage4.1.1.3 None
SRR12708398 Sensitive lineage4.4.1.1 None
ERR4797193 HR-TB lineage1.1.2 None
SRR11342698 RR-TB lineage4.4.1.1 None
ERR502474 RR-TB lineage4.9 None
SRR25207125 MDR-TB lineage2.2.2 None
SRR5341432 Other La1.7;lineage4.9;lineage7 None
SRR14802079 MDR-TB lineage4.2.1 None
SRR3675541 Sensitive lineage4.9 None
SRR9971112 HR-TB lineage2.2.1 None
SRR5341453 Other lineage4.9 None
ERR4812155 Other lineage4.9 None
SRR3675229 Sensitive lineage4.9 None
SRR12708372 Sensitive lineage4.9 None
ERR126597 HR-TB lineage4.4.1.2 None
SRR1180391 Sensitive lineage4.9 None
SRR5341455 Sensitive lineage4.9 None
SRR1180399 Sensitive lineage4.9 None
SRR12708392 Other lineage2.2.1 None
SRR6044819 Sensitive lineage4.9 None
SRR5341467 Other lineage4.9 None
SRR1180413 Sensitive lineage4.9 None
SRR18003030 Pre-XDR-TB lineage2.2.1 None
SRR1062919 HR-TB lineage2.2.1 None
SRR12708371 HR-TB lineage4.1.1.3 None
SRR5341299 HR-TB lineage4.9 None
ERR2027233 Sensitive lineage4.1.2.1 None
SRR7496523 Other lineage4.7 None
ERR502511 HR-TB lineage4.9 None
ERR4796577 HR-TB None
ERR987722 MDR-TB None
SRR27069421 Pre-XDR-TB lineage2.2.2 None
ERR4797474 Other lineage4.9 None
ERR4819051 Sensitive lineage4.9 None
ERR4818710 Sensitive lineage4.9 None
SRR5341373 Other lineage4.9 None
SRR9971114 Other lineage2.2.1 None
ERR736872 HR-TB lineage4.9 None
SRR10040433 MDR-TB lineage2.2.2 None
ERR779852 HR-TB lineage4.9 None
SRR12708418 HR-TB lineage2.2.1 None
SRR11342649 MDR-TB lineage4.3.3 None
ERR4831616 MDR-TB lineage2.2.1 None
ERR4819357 Sensitive lineage4.9 None
SRR5341330 Other lineage4.9 None
SRR1180345 Other lineage4.9 None
SRR6045010 Sensitive lineage4.9 None
ERR2693252 HR-TB lineage4.9 None
ERR9786384 Sensitive lineage4.1.2.1 None
ERR502943 Sensitive lineage2.2.1;lineage4 None
SRR9971041 MDR-TB lineage4.3.3 None
ERR6866410 HR-TB lineage4.9 None
SRR7535082 Other lineage4.9 None
ERR3797015 HR-TB lineage4.9 None
ERR4814734 Other lineage1.2.1.1 None
SRR26159047 RR-TB lineage4.6.3;lineage4.9 None
SRR1172310 MDR-TB lineage4.9 None
ERR6866125 Sensitive lineage4.1.2.1 None
ERR4831617 MDR-TB lineage2.2.1 None
ERR245794 HR-TB lineage4.3.4.2.1 None
SRR6046564 Sensitive lineage4.9 None
SRR6046245 Other lineage4.9 None
SRR1180226 HR-TB lineage4.9 None
ERR2512770 Sensitive lineage4.2.1 None
SRR1184021 Sensitive lineage4.9 None
SRR6046225 Other lineage4.9;lineage6.3 None
SRR5341345 Sensitive lineage4.9 None
SRR1175487 Sensitive lineage4.9 None
ERR987729 MDR-TB lineage3.1.2.1;lineage3.1.2.2 None
SRR3675577 Sensitive lineage4.9 None
SRR16156817 Other lineage4.9 None
SRR1180312 Sensitive lineage4.9 None
SRR7236177 Other La1.8.1 None
ERR124636 HR-TB lineage4.9 None
ERR4816548 HR-TB lineage4.5 None
SRR18002874 MDR-TB lineage2.2.1 None
SRR5341308 HR-TB lineage4.9 None
ERR502473 RR-TB lineage4.9 None
SRR15014655 Other M.canetti;lineage1 None
SRR12708411 HR-TB lineage1.2.2.2 None
ERR323062 HR-TB lineage4.9 None
ERR736865 MDR-TB lineage4.3.2;lineage4.9 None
SRR5341387 Other lineage4.9 None
ERR751326 Other lineage4.9 None
ERR867541 MDR-TB lineage4.2.1 None
SRR1180319 Sensitive lineage4.9 None
SRR1183054 Sensitive lineage4.9 None
ERR323107 HR-TB lineage4.9 None
SRR1180946 Sensitive lineage2;lineage4.9 None
SRR1175513 Sensitive lineage4.9 None
SRR1183111 HR-TB lineage4.9 None
ERR4596910 Sensitive lineage4.9 None