Rv3596c - c.2164C>T
Drug resistance types
5 Sensitive
2 RR-TB
19 HR-TB
4 MDR-TB
3 Pre-XDR-TB
4 XDR-TB
30 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 23 |
| lineage2.2.1 | 6 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| M.canetti;lineage4.9 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage4.6.3;lineage4.9 | 2 |
| 6 | |
| La1.2.BCG | 1 |
| lineage2.1;lineage4.9 | 3 |
| lineage4.8;lineage4.9 | 2 |
| lineage6.1.3 | 1 |
| lineage3.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage4 | 1 |
| lineage4.3.2.1 | 1 |
| lineage3.1.1 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage2.1 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.1.2 | 1 |
| lineage2.2.1;lineage3 | 1 |
| La1.2;La1.8.1 | 1 |
| lineage4.3.3 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage4.7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 67 |
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1173633 | Other | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | SRR26159043 | Other | lineage4.9 | None | SRR1173400 | Other | lineage4.9 | None | SRR5341308 | HR-TB | lineage4.9 | None | SRR1173384 | Other | lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR1173562 | Sensitive | lineage4.9 | None | SRR11567794 | Pre-XDR-TB | lineage2.2.1 | None | SRR1184294 | Other | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR1196566 | Other | lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR21291153 | Sensitive | lineage2.2.1 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | SRR1173363 | Other | None | SRR1172857 | Other | None | SRR8651586 | Pre-XDR-TB | lineage2.2.1 | cn | SRR1196583 | Other | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4798262 | HR-TB | La1.2.BCG | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR4024991 | HR-TB | lineage4.8;lineage4.9 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR6866639 | HR-TB | lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR7496471 | Sensitive | lineage4 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR1196474 | Other | lineage3.1.1 | None | ERR1035122 | HR-TB | lineage4.9 | None | ERR323062 | HR-TB | lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR3675508 | MDR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1184381 | MDR-TB | None | ERR1063896 | HR-TB | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR25827682 | Other | None | SRR1710057 | Other | lineage2.1 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1173355 | Other | lineage4.9 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR1173778 | Other | lineage4.9 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | SRR21277774 | Sensitive | lineage2.2.1 | None | SRR5341453 | Other | lineage4.9 | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR3416776 | Other | lineage2.1 | None | SRR11567795 | XDR-TB | lineage2.2.1 | None | SRR6045191 | Sensitive | lineage4.9 | None | ERR736834 | HR-TB | lineage4.9 | None | ERR6866022 | HR-TB | lineage4.8;lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR7496523 | Other | lineage4.7 | None | SRR1196768 | MDR-TB | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None |
|---|
