Rv1484 - c.-297T>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
25 Sensitive
2 RR-TB
31 HR-TB
2 MDR-TB
6 Pre-XDR-TB
2 XDR-TB
80 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.4.2.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.9 | 42 |
| lineage4.8 | 3 |
| 22 | |
| La3;lineage4.9 | 2 |
| lineage4.1.3 | 2 |
| lineage2.2.1 | 10 |
| lineage4.1.1.1 | 2 |
| lineage2.1;lineage4.9 | 7 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage2.1 | 2 |
| lineage1.1.1 | 1 |
| lineage2.1;lineage6.3 | 1 |
| La3 | 1 |
| La1.8.1 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.1.2.1 | 2 |
| lineage4.9;lineage7 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage1.2.1.1 | 1 |
| lineage4.1.1.2 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage4.6.1 | 1 |
| lineage6.3.1 | 1 |
| lineage4.9;lineage6.3 | 7 |
| lineage2.2.1;lineage3 | 1 |
| lineage6 | 1 |
| lineage6.1.3 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.3.2.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.1.2 | 2 |
| lineage3.1 | 2 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage4.2;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage3 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.3.3 | 1 |
| lineage4 | 2 |
| lineage4.6.3;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 148 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR6046593 | Other | lineage4.9 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4800341 | Other | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR4811105 | HR-TB | None | ERR4769450 | Other | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4811075 | Other | None | ERR4811311 | Other | None | SRR28119753 | Other | lineage4.9 | None | ERR9786617 | Other | lineage4.1.1.1 | None | SRR1196546 | Other | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR6511621 | Sensitive | lineage4.9 | None | SRR29093909 | Other | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR3675236 | Other | None | SRR12416824 | HR-TB | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR4817893 | Other | lineage4.8 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR702406 | Other | lineage2.1 | None | SRR29097066 | Sensitive | lineage4.9 | None | SRR6046594 | Sensitive | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR1172817 | Other | La3 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR7496509 | Other | None | SRR7240033 | Other | La1.8.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR3675585 | Sensitive | lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR9786843 | Other | None | SRR25827561 | Pre-XDR-TB | lineage2.2.1;lineage4 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR4816999 | Other | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR4810741 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR29096178 | Sensitive | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4811142 | RR-TB | None | ERR9786569 | Other | lineage4.8 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR7535086 | Other | None | SRR25827407 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | ERR9787165 | Other | lineage6 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | ERR4816585 | Other | lineage2.2.1 | None | SRR28119777 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR28351442 | HR-TB | lineage3.1 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR234659 | Other | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR9786671 | Other | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR9786604 | Other | None | SRR3675572 | Other | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR3675457 | Other | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR1196768 | MDR-TB | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR25827566 | Sensitive | lineage3 | None | SRR18213713 | HR-TB | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR1063896 | Sensitive | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1175074 | Other | None | ERR4815604 | Other | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR7496517 | Other | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4798099 | Other | lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR1173384 | Other | lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None |
|---|
