Rv3596c - c.618G>C


Drug resistance types
109 Sensitive 32 RR-TB 53 HR-TB 40 MDR-TB 14 Pre-XDR-TB 1 XDR-TB 85 Other
lineage Counts
lineage Count
lineage2.2.1 29
lineage4.8 5
lineage4.6.1.2 5
lineage4.3.4.2.1 5
lineage3 11
lineage4.1.2.1 5
lineage4.4.1.1;lineage4.1.2.1 1
lineage4 56
44
lineage4.3.2.1 1
lineage4.9 122
lineage4.9;lineage2.2 1
lineage4.4.1.1.1 1
lineage2 1
lineage2.2 1
lineage4.2.1 2
lineage4.4.2 1
La1.4 1
lineage4.1 3
lineage4;lineage2.2 1
lineage4.9;lineage4.8.1;lineage4.1.1 1
lineage1.2.1.1 1
lineage2.1 2
lineage4.5 2
lineage4.1.1.2 1
lineage1 1
lineage5.1.4 1
lineage1.1.2 2
lineage4.9;lineage2.1 1
lineage4.9;lineage4.2.1 1
lineage4.1.1.3 2
lineage4.2.1.1 1
lineage2.2.1.1 1
lineage4.3.3 2
lineage4.1.2 2
lineage4.7 2
lineage4.6.1.1 1
lineage4.4.1.2 1
La1.7.X-unk4 1
La1.8.1 1
lineage4.6.2.2 2
lineage4;lineage3.1 1
lineage4.9;La1.3 1
La1.2 1
La1.3 1
lineage2.2.2 1
lineage1.1.3.1 1
lineage4.9.1 1
lineage6.1.3 1
lineage3.1.1 1
spoligotype Counts
spoligotype Count
None 334
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR10315556 Sensitive lineage2.2.1 None
SRR10315551 Sensitive lineage2.2.1 None
SRR10315558 Sensitive lineage2.2.1 None
SRR10315751 MDR-TB lineage4.8 None
SRR1049581 MDR-TB lineage4.6.1.2 None
SRR1062871 MDR-TB lineage4.3.4.2.1 None
SRR1049672 Other lineage3 None
SRR1049725 RR-TB lineage4.1.2.1 None
SRR1049582 MDR-TB lineage4.6.1.2 None
SRR1049673 Pre-XDR-TB lineage3 None
SRR1049726 MDR-TB lineage4.4.1.1;lineage4.1.2.1 None
SRR1062880 MDR-TB lineage4.6.1.2 None
SRR1062918 Pre-XDR-TB lineage3 None
SRR10808399 Sensitive lineage4 None
SRR1062928 RR-TB lineage4 None
SRR10809074 Sensitive lineage4 None
SRR10808805 Sensitive None
SRR1140712 MDR-TB lineage4.6.1.2 None
SRR11349147 RR-TB lineage4.3.2.1 None
SRR1140716 Pre-XDR-TB lineage3 None
SRR1173281 RR-TB lineage3 None
SRR1140736 RR-TB None
SRR1140753 MDR-TB lineage4.3.4.2.1 None
SRR1172717 Other lineage4.9 None
SRR1172807 Sensitive lineage4.9 None
SRR1173185 HR-TB lineage4.9 None
SRR1172885 HR-TB lineage4.9 None
SRR1173170 Other lineage4.9 None
SRR1173310 MDR-TB None
SRR1173450 RR-TB lineage4.9 None
SRR1173385 Sensitive lineage4.9 None
SRR1173740 Other None
SRR1173515 HR-TB lineage4.9 None
SRR1173568 Other lineage4.9 None
SRR1173719 HR-TB lineage3 None
SRR1173777 Other lineage4 None
SRR1173770 Other lineage4.9 None
SRR1175052 HR-TB lineage4.9 None
SRR1175473 Other lineage4.9 None
SRR1175506 Sensitive lineage4.9 None
SRR1175496 HR-TB lineage4.9 None
SRR1175474 HR-TB lineage4.9 None
SRR1175472 MDR-TB lineage4 None
SRR1175491 MDR-TB lineage4 None
SRR1175487 Sensitive lineage4.9 None
SRR1175500 MDR-TB lineage4 None
SRR1175508 Other lineage4.9 None
SRR1175507 MDR-TB lineage4 None
SRR1175512 Sensitive lineage4.9 None
SRR1180250 Other lineage4.9 None
SRR1175513 Other lineage4.9 None
SRR1180312 Sensitive lineage4.9 None
SRR1180300 Sensitive lineage4.9 None
SRR1180355 Sensitive lineage4.9 None
SRR1180319 Sensitive lineage4.9 None
SRR1180345 Other lineage4.9 None
SRR1180375 Sensitive lineage4.9 None
SRR1180410 Sensitive lineage4.9;lineage2.2 None
SRR1180406 Sensitive lineage4.9 None
SRR1180391 Sensitive lineage4.9 None
SRR1180399 Sensitive lineage4.9 None
SRR1180413 Sensitive lineage4.9 None
SRR1180440 Other lineage4.9 None
SRR1180420 Sensitive lineage4.9 None
SRR1181402 Sensitive lineage4.9 None
SRR1180446 Other lineage4.9 None
SRR1181214 Other lineage4.9 None
SRR1181325 Sensitive lineage4.9 None
SRR1181349 Sensitive lineage4.4.1.1.1 None
SRR1181390 Sensitive lineage2 None
SRR1180444 Sensitive lineage4.9 None
SRR1181237 Sensitive lineage2.2 None
SRR1181283 Sensitive lineage4.9 None
SRR1181351 Sensitive lineage4.9 None
SRR1181368 Other lineage4.9 None
SRR1196478 MDR-TB lineage4.9 None
SRR1184308 Sensitive lineage4.9 None
SRR1184329 MDR-TB lineage4.9 None
SRR1183054 Sensitive lineage4.9 None
SRR14782539 MDR-TB lineage4.2.1 None
SRR11972425 Pre-XDR-TB lineage2.2.1 None
SRR1196545 HR-TB lineage4.9 None
SRR13423546 Other lineage4.4.2 None
SRR14801749 Sensitive None
SRR16156188 HR-TB lineage4.9 None
SRR16156697 MDR-TB lineage2.2.1 None
SRR16156804 RR-TB lineage4.9 None
SRR16156775 Other lineage4.9 None
SRR18003030 Pre-XDR-TB lineage2.2.1 None
SRR16278274 Other La1.4 None
SRR18002891 MDR-TB lineage2.2.1 None
SRR18003012 Pre-XDR-TB lineage2.2.1 None
SRR18003024 RR-TB lineage2.2.1 None
SRR16156832 RR-TB None
SRR19303820 RR-TB lineage4.8 None
SRR18003032 Other lineage2.2.1 None
SRR21675425 HR-TB lineage4.8 None
SRR2010299 Pre-XDR-TB lineage2.2.1 None
SRR20632814 Sensitive lineage4 None
SRR20970043 MDR-TB lineage2.2.1 None
SRR21677886 Sensitive lineage4.9 None
SRR12708416 Sensitive lineage4.1 None
SRR8692879 HR-TB lineage4.9 None
SRR8692790 RR-TB lineage4 None
SRR8692899 Other lineage4.9 None
SRR8692800 Other lineage4 None
SRR8692887 Other None
SRR8692905 HR-TB None
SRR8692863 Other lineage4;lineage2.2 None
SRR3675455 Sensitive lineage4 None
ERR779852 Sensitive lineage4.9;lineage4.8.1;lineage4.1.1 None
SRR3675472 Sensitive lineage4.9 None
SRR3675477 Other lineage4.9 None
SRR3675473 Sensitive lineage4.9 None
SRR3619841 Pre-XDR-TB lineage2.2.1 None
ERR4814734 Other lineage1.2.1.1 None
SRR3675210 Sensitive lineage4.9 None
SRR3675229 Other lineage4 None
SRR3618864 Pre-XDR-TB lineage2.2.1 None
ERR4815471 Other lineage4.9 None
ERR702405 Sensitive lineage2.1 None
SRR3675249 Sensitive lineage4.9 None
SRR3675247 Other lineage4.9 None
SRR3675266 Sensitive lineage4.9 None
SRR3675279 Other None
ERR176580 Sensitive lineage4.3.4.2.1 None
SRR3675283 Sensitive lineage4.9 None
SRR3675318 Other lineage4.9 None
ERR4815550 Other lineage4 None
SRR3675387 Sensitive None
SRR3675522 Other None
ERR4815079 RR-TB lineage3 None
ERR4816964 Other lineage4.9 None
SRR3675514 Sensitive lineage4.9 None
SRR3675548 Sensitive lineage4.9 None
SRR3675542 Other lineage4.9 None
SRR3675541 Sensitive lineage4.9 None
SRR3675547 Other lineage4.9 None
SRR3675553 Sensitive lineage4.9 None
SRR3675577 Sensitive lineage4.9 None
ERR4816470 Other lineage3 None
ERR216965 HR-TB lineage4.9 None
ERR2229198 MDR-TB lineage4.8 None
ERR4816548 MDR-TB lineage4.5 None
SAMN02380990 MDR-TB lineage4.6.1.2 None
ERR4817204 RR-TB lineage4.9 None
ERR4818710 Sensitive lineage4.9 None
ERR4818646 Sensitive lineage4.1.2.1 None
ERR2446566 Other lineage4.1 None
ERR4817915 RR-TB lineage4.9 None
ERR4818110 Sensitive lineage4.9 None
ERR4818393 RR-TB lineage3 None
ERR4818252 Other lineage4.1.1.2 None
ERR4818126 RR-TB lineage1 None
ERR245794 HR-TB lineage4.3.4.2.1 None
ERR2513229 MDR-TB lineage2.2.1 None
ERR4818536 Other lineage4.9 None
ERR4819051 Other lineage4 None
ERR2512770 Other lineage4.2.1 None
ERR4819383 RR-TB lineage4.9 None
ERR2513283 Other lineage5.1.4 None
SRR5341387 Other lineage4 None
SRR5341396 Other lineage4 None
ERR4819357 Other lineage4.9 None
ERR4819462 Other lineage4 None
SRR5341437 Sensitive lineage4.9 None
SRR5341465 Pre-XDR-TB lineage2.2.1 None
ERR2514552 Sensitive lineage3 None
SRR5341323 Sensitive lineage4 None
SRR5341467 Other lineage4 None
SRR5341296 Sensitive lineage4.9 None
SRR5341455 Sensitive lineage4 None
ERR1023509 Other None
ERR4819933 Other lineage4.9 None
SRR5341310 Other lineage1.1.2 None
ERR4820030 Other lineage4.9 None
SRR5341345 Sensitive lineage4.9 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
ERR4821811 RR-TB lineage4.9 None
SRR5341469 Other lineage4 None
ERR4821655 Sensitive lineage4 None
ERR502511 Sensitive lineage4.9;lineage2.1 None
ERR4821172 RR-TB lineage4.9 None
ERR4821747 MDR-TB lineage4.9;lineage4.2.1 None
ERR4821686 Sensitive lineage4.1.2.1 None
SRR6046141 Other lineage4.9 None
SRR6045795 HR-TB lineage2.2.1 None
SRR6045892 Sensitive None
SRR6045832 HR-TB lineage4.9 None
SRR6044780 Other lineage4.9 None
SRR6044819 Sensitive lineage4.9 None
SRR6044838 Other lineage4.9 None
SRR6045010 Other lineage4 None
SRR6044835 Sensitive lineage4 None
SRR6045002 MDR-TB lineage4.9 None
SRR6046245 Other lineage4.9 None
SRR6045191 Sensitive lineage4.9 None
SRR6045399 Other None
SRR6046644 HR-TB None
SRR6046492 Other None
ERR4831618 MDR-TB lineage2.1 None
ERR502470 RR-TB lineage4.9 None
ERR485006 HR-TB lineage4.9 None
ERR323037 HR-TB lineage4 None
ERR4831617 MDR-TB lineage2.2.1 None
ERR4831620 MDR-TB lineage2.2.1 None
ERR4831616 MDR-TB lineage2.2.1 None
SRR6982239 HR-TB lineage4.1.1.3 None
ERR4831638 Sensitive None
SRR6785281 Other lineage4.2.1.1 None
ERR4831621 MDR-TB lineage2.2.1.1 None
ERR502510 Sensitive lineage4 None
SRR6982141 RR-TB lineage4.3.3 None
SRR6789624 MDR-TB lineage4.1 None
ERR502943 HR-TB None
SRR9970980 Other lineage4.1.2 None
SRR9971270 RR-TB lineage2.2.1 None
SRR7496471 Sensitive None
SRR7496523 Other lineage4.7 None
SRR7535047 RR-TB lineage4.6.1.1 None
SRR9971114 Other lineage2.2.1 None
SRR7535082 Sensitive lineage4 None
SRR9970978 Sensitive lineage4.1.2 None
SRR9971080 RR-TB lineage2.2.1 None
SRR9971122 MDR-TB lineage4.8 None
SRR9971112 Other lineage2.2.1 None
ERR323044 HR-TB lineage4.3.4.2.1 None
ERR036207 Other lineage4.9 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR323068 Sensitive lineage4.9 None
ERR323115 Sensitive lineage4 None
ERR1023525 HR-TB lineage4 None
ERR1034647 MDR-TB lineage4.1.1.3 None
ERR1063883 Sensitive lineage4 None
ERR1034634 HR-TB None
ERR10796569 Other lineage4.9 None
ERR108125 Pre-XDR-TB lineage4.9 None
ERR11465490 Sensitive lineage4.1.2.1 None
ERR137286 Sensitive lineage4 None
ERR3283006 RR-TB lineage4.9 None
ERR3273109 MDR-TB lineage4 None
ERR3283014 HR-TB None
ERR3283033 Sensitive lineage4.9 None
ERR3283028 Other None
ERR3283021 HR-TB None
ERR3283041 Other lineage4.9 None
ERR3283030 HR-TB lineage4.9 None
ERR3283031 HR-TB None
ERR3283040 HR-TB None
ERR3283047 HR-TB None
ERR3445487 Other La1.7.X-unk4 None
ERR3283058 Other lineage4.9 None
ERR3283057 HR-TB lineage4 None
ERR3439489 RR-TB La1.8.1 None
ERR369151 Sensitive lineage4.9 None
ERR3797043 HR-TB None
ERR3797015 HR-TB None
ERR369156 Sensitive lineage4.9 None
ERR369157 Sensitive lineage4.9 None
ERR3797063 HR-TB None
ERR3797047 HR-TB lineage4 None
ERR3797065 MDR-TB lineage4 None
ERR3797048 HR-TB None
ERR3797062 RR-TB lineage4.9 None
ERR3797064 Sensitive None
ERR3797080 HR-TB lineage4.9 None
ERR3797079 Sensitive lineage4 None
ERR3801503 Sensitive lineage4.6.2.2 None
ERR3797081 Sensitive lineage4 None
ERR3797087 Sensitive lineage4 None
ERR400326 Sensitive lineage4 None
ERR400320 Sensitive lineage4 None
ERR400336 Sensitive lineage4 None
ERR400345 Other lineage4 None
ERR4024991 Other None
ERR4769442 HR-TB lineage4 None
ERR405209 Sensitive lineage4 None
ERR4596910 Sensitive lineage4 None
ERR473303 Sensitive lineage4.9 None
ERR473323 HR-TB lineage4.9 None
ERR473332 Other lineage4 None
ERR405219 HR-TB lineage4;lineage3.1 None
ERR473334 HR-TB lineage4.9 None
ERR4769444 HR-TB lineage4.9 None
ERR4769474 HR-TB lineage4 None
ERR4769493 Pre-XDR-TB lineage4.9;La1.3 None
ERR4769508 RR-TB lineage4.9 None
ERR4769497 HR-TB La1.2 None
ERR4769517 Other La1.3 None
ERR4769554 RR-TB lineage4.9 None
ERR4769530 RR-TB lineage4.9 None
ERR4797193 HR-TB lineage1.1.2 None
ERR4796254 Sensitive lineage4 None
ERR4796577 MDR-TB None
ERR4796929 Sensitive lineage4 None
ERR4797184 Sensitive lineage4 None
ERR4797264 Sensitive None
ERR4797474 Other None
ERR4797313 HR-TB None
ERR4797350 Sensitive lineage4.9 None
ERR4812155 Sensitive None
ERR4808964 RR-TB lineage2.2.1 None
ERR4809333 Pre-XDR-TB lineage2.2.2 None
ERR4811030 Sensitive None
ERR4798099 Other None
ERR4799378 Sensitive lineage4 None
ERR4811031 Sensitive lineage4.5 None
ERR5917985 MDR-TB lineage2.2.1 None
ERR5987263 MDR-TB lineage2.2.1 None
ERR6359070 Other lineage4.9 None
ERR6358951 HR-TB lineage4 None
ERR6197030 Other lineage4.9 None
ERR6359074 HR-TB lineage4.9 None
ERR6359069 Other lineage4.9 None
ERR6866410 Sensitive None
ERR6866022 Other None
ERR6866125 Sensitive lineage4.1.2.1 None
ERR6866547 Sensitive lineage4 None
ERR736831 HR-TB lineage4.9 None
ERR6866639 Other None
ERR736837 Other lineage4.9 None
ERR8479578 Sensitive lineage1.1.3.1 None
ERR736835 HR-TB None
ERR736856 HR-TB lineage4 None
ERR736848 HR-TB None
ERR751326 Sensitive lineage4 None
ERR9119733 MDR-TB lineage2.2.1 None
ERR037504 Other lineage4.9.1 None
ERR9787256 Other lineage6.1.3 None
ERR9786076 Sensitive lineage3 None
ERR9786711 Sensitive lineage4.6.2.2 None
ERR9285979 RR-TB lineage3.1.1 None
ERR987707 MDR-TB lineage4.7 None
ERR9992879 XDR-TB lineage4.3.3 None