Rv3596c - c.618G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
94 Sensitive
22 RR-TB
32 HR-TB
15 MDR-TB
11 Pre-XDR-TB
0 XDR-TB
64 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 121 |
| La3;lineage4.9 | 8 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage3 | 8 |
| lineage1.1.2 | 2 |
| lineage2.2.1 | 25 |
| lineage4.3.4.2.1 | 3 |
| La1;lineage4.9 | 2 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| La1.4 | 1 |
| lineage3;lineage4 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage4.1.2.1 | 3 |
| lineage4.1.1.3 | 3 |
| lineage4.8;lineage4.9 | 2 |
| La1.7;M.canetti;lineage4.9 | 3 |
| La1.6;lineage4 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 2 |
| lineage4.8 | 3 |
| lineage4.6.2.2 | 2 |
| lineage4 | 2 |
| lineage4.3.3 | 3 |
| lineage4.3.2.1 | 1 |
| La1.7;lineage4.9 | 1 |
| La1.8.1 | 3 |
| lineage4.2.1 | 2 |
| lineage4.3.4.2 | 1 |
| lineage4.6.1.1 | 1 |
| lineage3;lineage4.9 | 1 |
| 2 | |
| lineage4.5 | 1 |
| lineage4.7 | 2 |
| lineage1.2.1.1 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.3 | 1 |
| lineage6.1.3 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.1.2 | 3 |
| lineage3.1.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.2.1.1 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage5.1.4 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| La1.7;lineage4.9;lineage6 | 1 |
| La3;lineage4 | 1 |
| lineage2.2.2 | 1 |
| lineage2.2;lineage4 | 1 |
| lineage4.9.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 238 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | SRR1175508 | Sensitive | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR3283021 | HR-TB | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | SRR18003032 | Other | lineage2.2.1 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR3797065 | RR-TB | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR11465490 | Sensitive | lineage4.1.2.1 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | ERR867570 | RR-TB | lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1238559 | Other | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR5162090 | RR-TB | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | SRR1049672 | Other | lineage3 | None | SRR6046492 | Other | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR2229198 | Sensitive | lineage4.8 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | SRR7496471 | Sensitive | lineage4 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR3273109 | HR-TB | lineage4 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | ERR4769493 | Other | lineage4.9 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675247 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR5341310 | Other | lineage1.1.2 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | SRR28044873 | Pre-XDR-TB | lineage3 | None | ERR369156 | Sensitive | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR4796577 | HR-TB | None | SRR1180250 | Other | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR1180345 | Other | lineage4.9 | None | ERR4815079 | RR-TB | lineage3 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR502511 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR4769554 | RR-TB | lineage4.9 | None | SRR12708384 | Sensitive | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR4769508 | RR-TB | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | SRR16156188 | Sensitive | lineage4.9 | None | ERR6359069 | Sensitive | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR2514552 | Sensitive | lineage3 | None | ERR9786076 | Sensitive | lineage3 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | ERR751326 | Other | lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | ERR867542 | HR-TB | lineage4.3 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR323037 | Other | lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR11342682 | Other | lineage4.1.2 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799378 | Sensitive | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR1023509 | Other | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | ERR473332 | Other | lineage4.9 | None | SRR7240033 | Other | La1.8.1 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR1175473 | Other | lineage4.9 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR6044835 | Other | lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR12708416 | Sensitive | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR12708419 | Other | lineage4.3.3 | None | ERR6359070 | Sensitive | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | SRR1173281 | Other | lineage3 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR16156804 | Sensitive | lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | ERR4796254 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR1140736 | Other | lineage4.1.2.1 | None | ERR4815471 | Sensitive | lineage4.9 | None | ERR4817915 | Other | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR7236177 | Other | La1.8.1 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR3283028 | Other | La3;lineage4 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | SRR3675522 | Other | lineage4.9 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR5341296 | Sensitive | lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | ERR037504 | Other | lineage4.9.1 | None | ERR736856 | Sensitive | lineage4.9 | None |
|---|
