EBG00000313339 - n.1096A>G
Drug resistance types
107 Sensitive
5 RR-TB
78 HR-TB
25 MDR-TB
7 Pre-XDR-TB
0 XDR-TB
93 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2 | 4 |
| La1.2 | 2 |
| lineage4.3.3 | 1 |
| lineage4.9 | 141 |
| lineage2.2.1 | 20 |
| La3;lineage4 | 1 |
| La1.8.1 | 5 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage5.2 | 3 |
| lineage4.1.2 | 2 |
| lineage4 | 2 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.6.3;lineage4.9 | 2 |
| La1.7;lineage4.9 | 7 |
| La2;lineage4.9 | 2 |
| lineage4.1.2.1 | 9 |
| lineage4.8.1 | 1 |
| lineage4.3.4.2.1 | 9 |
| lineage4.9.1 | 1 |
| lineage4.9;lineage7 | 4 |
| lineage4.6.1.1 | 2 |
| lineage4.3.4.1 | 6 |
| lineage4.8 | 3 |
| lineage2.1;lineage4.9 | 2 |
| lineage1;lineage4.9 | 1 |
| lineage6.1.3 | 2 |
| lineage2.2.1.1 | 3 |
| 4 | |
| La3;lineage4.9 | 8 |
| lineage3 | 3 |
| La1;lineage4.9 | 3 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage3.1 | 1 |
| lineage6.1.1 | 2 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| La1.2.BCG | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.9;lineage6.3 | 2 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage4.6.2.2 | 1 |
| lineage2.2.1.2;lineage7 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage2.2.1.2 | 2 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| lineage1.2.2.2 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| La2;lineage2.2 | 1 |
| lineage4.3.4.2 | 2 |
| La1.7.1 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage1.1.2 | 3 |
| lineage4.9;lineage9 | 3 |
| La3;lineage4.3.4 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.1.1.3 | 2 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.4.2 | 1 |
| lineage4.2.1 | 1 |
| lineage1.1.1 | 1 |
| lineage4.4.1.2 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.3.4 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La1.2;La1.8.1 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage6 | 1 |
| lineage1.1.3.2 | 1 |
| lineage1.1.3.1 | 1 |
| La1;lineage4.1.2 | 1 |
| lineage6.1.2 | 1 |
| lineage3.1.3 | 1 |
| lineage2.2;lineage4 | 1 |
| lineage4.5 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 315 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4810624 | MDR-TB | lineage2.2 | None | ERR4769421 | Other | La1.2 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR387051 | Other | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR3283028 | Other | La3;lineage4 | None | ERR3797067 | Other | La1.8.1 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR4872077 | Pre-XDR-TB | lineage5.2 | None | SRR1159378 | Other | lineage4.9 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR6045053 | Other | lineage4 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR11465351 | Sensitive | lineage4.1.2.1 | None | ERR11465604 | HR-TB | lineage4.8.1 | None | ERR11466072 | Sensitive | lineage4.3.4.2.1 | None | ERR4769427 | Other | La1.2 | None | ERR702405 | Sensitive | lineage4.9 | None | ERR11466061 | Sensitive | lineage4.9.1 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | SRR8692904 | Other | lineage4.9 | None | ERR11466070 | Sensitive | lineage4.3.4.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR4799025 | Other | lineage4.8 | None | SRR6046492 | Other | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR29096425 | Sensitive | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR970443 | RR-TB | lineage2.2.1.1 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR5341366 | Sensitive | lineage4.9 | None | SRR8692887 | Other | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR11465152 | Sensitive | lineage4.3.4.1 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4798504 | RR-TB | lineage3 | None | ERR161037 | Other | lineage4.9 | None | ERR13265708 | Sensitive | lineage2.2.1 | None | SRR10808399 | Sensitive | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR970441 | RR-TB | lineage2.2.1.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR11465235 | Sensitive | lineage4.3.4.2.1 | None | ERR11465151 | Sensitive | lineage4.3.4.1 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | SRR29096717 | Sensitive | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | ERR926164 | Other | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | ERR2660539 | Other | lineage4.9 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR28351442 | HR-TB | lineage3.1 | None | SRR26331611 | Sensitive | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR176740 | Other | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341298 | Sensitive | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR1180996 | Sensitive | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR9786597 | Other | lineage4.6.2.2 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR3797029 | Other | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR5341373 | Other | lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR1175127 | Other | lineage2.2.1.2 | None | ERR11488417 | MDR-TB | lineage4.1.2.1 | None | SRR6044875 | Sensitive | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | ERR4797285 | MDR-TB | lineage1.2.2.2 | None | ERR1063896 | Sensitive | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR15723025 | Sensitive | lineage2.2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR5535933 | Other | lineage4.9 | None | ERR9786592 | Other | lineage4.3.4.2 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR5341455 | Sensitive | lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR11465715 | Sensitive | lineage4.1.2.1 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR736848 | Other | lineage4.9 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR5341293 | Sensitive | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | SRR29096276 | Sensitive | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR6981999 | Sensitive | lineage2.2.1 | None | ERR11465628 | Sensitive | lineage4.3.4.2.1 | None | SRR6046593 | Other | lineage4.9 | None | ERR3797019 | Other | La1.8.1 | None | ERR11466444 | Sensitive | lineage4.3.4.1 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | ERR11465509 | Sensitive | lineage4.3.4.2.1 | None | ERR751326 | Other | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR11465015 | Sensitive | lineage4.3.4.2.1 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | DRR188519 | Other | lineage4.4.2 | None | SRR26399265 | Other | lineage2.2.1 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4799378 | Sensitive | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | ERR4817554 | Other | lineage1.1.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR1023236 | Other | lineage6.1.3 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | ERR9786346 | Sensitive | lineage4.3.4.2 | None | ERR4769452 | Other | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR6044835 | Other | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR6359082 | Other | lineage4.9 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR3797081 | Sensitive | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR987722 | MDR-TB | None | SRR28044873 | Pre-XDR-TB | lineage3 | None | SRR8692894 | Other | lineage4.9 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | ERR9119483 | Pre-XDR-TB | lineage5.2 | None | SRR1791725 | Other | La1.8.1 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR6866807 | Other | lineage4.9 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | SRR7236177 | Other | La1.8.1 | None | ERR176651 | Other | lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR5341400 | Sensitive | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR4821655 | HR-TB | lineage4.9 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR926161 | Sensitive | lineage4.9 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR5341303 | Sensitive | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR8692890 | Other | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR9787362 | Sensitive | lineage6 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR28868888 | Other | lineage1.1.3.2 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR9970979 | Sensitive | lineage4.8 | None | ERR473332 | Other | lineage4.9 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR8692825 | Other | lineage4.9 | None | SRR9970978 | Sensitive | La1;lineage4.1.2 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | SRR1173777 | Sensitive | lineage4.9 | None | ERR970413 | MDR-TB | lineage2.2.1 | None | ERR9787030 | RR-TB | lineage6.1.2 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR8692905 | Sensitive | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341387 | Other | lineage4.9 | None | ERR2706950 | MDR-TB | lineage5.2 | cd | ERR181824 | HR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR926165 | Sensitive | lineage4.9 | None | ERR9786639 | Sensitive | lineage4.8 | None | SRR8692863 | Other | lineage2.2;lineage4 | None | ERR970445 | MDR-TB | lineage2.2.1 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR7535082 | Sensitive | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | SRR1158918 | Sensitive | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR137286 | Other | lineage4.9 | None | ERR752229 | Other | lineage4.5 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR1173568 | Sensitive | lineage4.9 | None |
|---|
