TB-Profiler result

Run: SRR8692904
Summary

Run ID: SRR8692904

Sample name:

Date: 13-08-2023 21:39:59

Number of reads: NA

Percentage reads mapped: NA

Strain: lineage4.9

Drug-resistance: Other

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rplC 801268 p.Cys154Arg missense_variant 1.0 linezolid
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
Rv1258c 1406686 p.Val219Ile missense_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.11
rrl 1474709 n.1053delT non_coding_transcript_exon_variant 0.18
rrl 1474714 n.1058delT non_coding_transcript_exon_variant 0.2
rrl 1474753 n.1096A>G non_coding_transcript_exon_variant 0.27
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.22
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.2
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.14
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.1
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.18
rrl 1475991 n.2334T>C non_coding_transcript_exon_variant 0.15
rrl 1475995 n.2338G>A non_coding_transcript_exon_variant 0.15
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.17
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 0.17
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.17
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.17
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.16
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.16
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.17
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.16
rrl 1476056 n.2399G>A non_coding_transcript_exon_variant 0.16