Rv2245 - c.729T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
49 Sensitive
3 RR-TB
26 HR-TB
11 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
42 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.2.2.1;lineage4.4.1.1 | 1 |
| lineage4.9 | 75 |
| lineage4.8;lineage4.9 | 2 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage4.3.4 | 2 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage4.1.2.1 | 3 |
| lineage2.2.1 | 6 |
| M.canetti;lineage2.1;lineage4.9 | 3 |
| lineage4 | 3 |
| lineage1.1.3.1 | 1 |
| lineage4.1.2 | 2 |
| lineage4.8 | 2 |
| lineage1.1.2 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage2.2.1.1 | 3 |
| La1;lineage4.9 | 3 |
| La3;lineage4.9 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage2.2 | 1 |
| lineage4.1.2.1.1 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage6.1.3 | 1 |
| M.canetti;lineage4.9 | 2 |
| La1.8.1 | 1 |
| lineage4.9;lineage7 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.9;lineage6.1.3 | 1 |
| 1 | |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.3.4.1 | 2 |
| lineage2.2 | 1 |
| lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 132 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR11465714 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | ERR926156 | Sensitive | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR26399239 | Sensitive | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR6044780 | Sensitive | lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | ERR11465351 | Sensitive | lineage4.1.2.1 | None | ERR13285068 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | ERR926160 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR3273109 | HR-TB | lineage4 | None | SRR13861381 | HR-TB | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR22251108 | Sensitive | lineage1.1.2 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR1873393 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR323107 | Sensitive | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR1873396 | Pre-XDR-TB | M.canetti;lineage2.2 | None | SRR5341330 | Other | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR5311089 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR7240033 | Other | La1.8.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | SRR28351339 | MDR-TB | lineage4 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR1063896 | Sensitive | None | ERR502511 | Sensitive | lineage4.9 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR6045053 | Other | lineage4 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | SRR29231479 | RR-TB | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | SRR5341303 | Sensitive | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR926164 | Other | lineage4.9 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None |
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