EBG00000313325 - n.196C>T
Drug resistance types
38 Sensitive
6 RR-TB
63 HR-TB
10 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
70 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 100 |
| lineage4.1.2.1 | 8 |
| lineage4.8 | 2 |
| 2 | |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage2.2 | 4 |
| lineage4.4.1.1.1 | 1 |
| lineage2.2.1 | 16 |
| lineage4.3.4.2 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| La1.8.1 | 5 |
| lineage2.2.1.2 | 3 |
| lineage4.2.1 | 2 |
| lineage3 | 1 |
| lineage6.1.3 | 2 |
| lineage4 | 3 |
| M.canetti;lineage1 | 1 |
| lineage4.1.1.3 | 1 |
| lineage2.2.1.1 | 3 |
| La1;lineage4.9 | 2 |
| lineage4.9;lineage7 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| lineage4.7 | 1 |
| lineage4.4.2 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage3.1.3 | 1 |
| La1.2 | 1 |
| La1.3 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage1.1.3.1 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.5 | 2 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.1.2 | 1 |
| lineage4.3.3 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La1.2;La1.8.1 | 1 |
| lineage2.2.1.2;lineage7 | 1 |
| lineage4.4.1.1 | 1 |
| lineage6 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage2.2.2 | 1 |
| lineage1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 191 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR5341456 | Other | lineage4.9 | None | ERR4798199 | Sensitive | lineage4.1.2.1 | in | ERR2515230 | Sensitive | lineage4.8 | None | ERR1063896 | HR-TB | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR12708416 | Sensitive | None | ERR137286 | Other | lineage4.9 | None | SRR1173568 | Sensitive | lineage4.9 | None | ERR4797474 | Other | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | ERR4797264 | HR-TB | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR6797274 | Sensitive | lineage4.1.2.1 | None | ERR4810624 | MDR-TB | lineage2.2 | None | ERR4819357 | Sensitive | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR1159378 | Other | lineage4.9 | None | SRR6045217 | Other | lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | ERR9786592 | Other | lineage4.3.4.2 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR7617847 | Other | La1.8.1 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR6866410 | HR-TB | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR6045548 | Other | lineage4.9 | None | ERR3275709 | HR-TB | lineage3 | nl | ERR9787256 | Other | lineage6.1.3 | None | SRR6045347 | Other | lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | ERR323066 | HR-TB | lineage4.9 | None | ERR124636 | HR-TB | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662694 | Other | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | SRR5341308 | HR-TB | lineage4.9 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR7496471 | Sensitive | lineage4 | None | ERR4811030 | Other | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | SRR3675585 | HR-TB | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR4815471 | HR-TB | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR9971112 | HR-TB | lineage2.2.1 | None | SRR5341453 | Other | lineage4.9 | None | ERR6359069 | HR-TB | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR1180147 | RR-TB | lineage2.2.1.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR10808730 | Other | lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR4769452 | Other | lineage4.9 | None | SRR1173777 | Sensitive | lineage4.9 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR3675260 | Sensitive | lineage4.9 | None | SRR1180172 | RR-TB | lineage2.2.1 | None | ERR736834 | HR-TB | lineage4.9 | None | SRR1791725 | Other | La1.8.1 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR161037 | HR-TB | lineage4.9 | None | ERR502511 | HR-TB | lineage4.9 | None | DRR188519 | Other | lineage4.4.2 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR6045053 | Other | lineage4 | None | ERR6358979 | HR-TB | lineage4.9 | None | ERR4819051 | Sensitive | lineage4.9 | None | SRR6982059 | Sensitive | lineage4.1.2.1 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | SRR1175127 | Other | lineage2.2.1.2 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | SRR5341330 | Other | lineage4.9 | None | ERR4769427 | Other | La1.2 | None | SRR6046046 | Other | lineage4.9 | None | SRR5341298 | Other | lineage4.9 | None | ERR4769408 | Other | La1.3 | None | ERR9787336 | RR-TB | lineage6.1.3 | None | ERR4816964 | HR-TB | lineage4.9 | None | ERR6866639 | HR-TB | lineage4.9 | None | DRR184629 | Other | lineage2.2.1 | None | SRR14782054 | Other | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR400326 | Other | lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR3273109 | HR-TB | lineage4 | None | ERR2446566 | Other | lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR4796254 | Other | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR6358951 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR5341455 | Sensitive | lineage4.9 | None | ERR4797184 | HR-TB | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | ERR4798431 | Other | lineage4.1;lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | ERR245774 | HR-TB | lineage4.1.2.1 | mw | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR752229 | Other | lineage4.5 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | ERR4024991 | HR-TB | lineage4.8;lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR4798099 | HR-TB | lineage4.9 | None | ERR702405 | HR-TB | lineage4.9 | None | SRR6046492 | Other | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | SRR7535082 | Other | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR067699 | HR-TB | La1;lineage2;lineage4.9 | None | SRR7240476 | Other | La1.8.1 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR6046897 | Sensitive | lineage4.9 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | SRR14801749 | HR-TB | lineage4.9 | None | SRR3675548 | Sensitive | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR4811031 | Other | lineage4.5 | None | SRR6511621 | HR-TB | lineage4.9 | None | ERR1035122 | HR-TB | lineage4.9 | None | ERR323062 | HR-TB | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR751326 | Other | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | SRR6045706 | Other | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR9787362 | Sensitive | lineage6 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | DRR185024 | Other | lineage2.2.2 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR21658550 | Other | lineage1.1.1 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR1158918 | Other | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR502510 | HR-TB | lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR1183144 | RR-TB | lineage2.2.1 | None | ERR6866022 | HR-TB | lineage4.8;lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | SRR6045503 | Other | lineage4.9 | None | SRR3675209 | Sensitive | lineage4.9 | None |
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