EBG00000313325 - n.196C>T
Drug resistance types
132 Sensitive
2 RR-TB
44 HR-TB
16 MDR-TB
7 Pre-XDR-TB
0 XDR-TB
82 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 55 |
| lineage2.2.1.1 | 3 |
| lineage2.2.1 | 22 |
| lineage4.1.2.1 | 14 |
| 46 | |
| La1.8.1 | 2 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage2.2 | 4 |
| lineage4.2.1 | 3 |
| lineage1.1.1 | 1 |
| lineage4.1 | 3 |
| lineage4 | 89 |
| lineage2.1 | 1 |
| lineage4.1.1 | 1 |
| lineage3 | 3 |
| lineage3.1.3 | 1 |
| lineage5.1.4 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.8 | 3 |
| lineage4.9;lineage2.1 | 1 |
| lineage4.3.2.1 | 2 |
| lineage1.1.2 | 1 |
| lineage4.1.2 | 2 |
| lineage4.7 | 1 |
| lineage4.3.3 | 1 |
| lineage2.2.2 | 1 |
| lineage4.4.2 | 1 |
| La1.3 | 5 |
| lineage4.9;La1.3 | 1 |
| La1.2 | 2 |
| lineage2.2.1.2 | 3 |
| lineage4.5 | 2 |
| lineage1.1.3.1 | 1 |
| lineage4.3.4.2 | 1 |
| lineage6 | 2 |
| lineage6.1.3 | 1 |
| lineage4.4.1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 283 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1183965 | Sensitive | lineage4.9 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR13180363 | Sensitive | lineage4.1.2.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR14782405 | HR-TB | None | SRR1791725 | Other | La1.8.1 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR14801749 | Sensitive | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR1791747 | Other | La1.8.1 | None | SRR20970016 | Other | lineage2.2 | None | SRR21658550 | Other | lineage1.1.1 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4 | None | SRR3675472 | Sensitive | lineage4.9 | None | ERR4815471 | Other | lineage4.9 | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3675477 | Other | lineage4.9 | None | SRR3675279 | Other | None | SRR3675229 | Other | lineage4 | None | ERR702405 | Sensitive | lineage2.1 | None | ERR3275450 | Other | lineage4 | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675249 | Sensitive | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675266 | Sensitive | lineage4.9 | None | SRR3675270 | HR-TB | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675283 | Sensitive | lineage4.9 | None | SRR3675537 | Sensitive | lineage4.9 | None | SRR3675387 | Sensitive | None | SRR3675522 | Other | None | SRR3675318 | Other | lineage4.9 | None | ERR4816964 | Other | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR212123 | Other | None | SRR3675542 | Other | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1 | None | SRR3675548 | Sensitive | lineage4.9 | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR212121 | HR-TB | None | ERR3275709 | HR-TB | lineage3 | nl | ERR2446566 | Other | lineage4.1 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR2513438 | Sensitive | lineage4.1.2.1 | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4817998 | Other | lineage3 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR2512770 | Other | lineage4.2.1 | None | ERR245774 | HR-TB | lineage4.1.2.1 | mw | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR4819051 | Other | lineage4 | None | SRR5341453 | Sensitive | None | ERR2513283 | Other | lineage5.1.4 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341387 | Other | lineage4 | None | SRR5341396 | Other | lineage4 | None | ERR4819357 | Other | lineage4.9 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR5341456 | Other | None | SRR5341425 | Other | lineage4 | None | ERR4819933 | Other | lineage4.9 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341300 | Other | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | ERR6359082 | Other | lineage4.9 | None | ERR2446382 | Other | lineage4 | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341330 | HR-TB | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR5341461 | Sensitive | lineage4 | None | ERR2515230 | Sensitive | lineage4.8 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR2693238 | HR-TB | lineage4.9 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR5341469 | Other | lineage4 | None | ERR2517475 | Other | lineage4 | None | SRR5535933 | HR-TB | None | SRR6045503 | HR-TB | None | SRR6046210 | Other | lineage4 | None | ERR2660539 | Other | lineage4.9 | None | ERR2693227 | Other | lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6045053 | Other | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045010 | Other | lineage4 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR6045217 | Other | lineage4 | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046046 | Other | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR6046299 | HR-TB | None | SRR6046385 | Other | lineage4.9 | None | SRR6046492 | Other | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6046863 | Sensitive | lineage1.1.2 | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046802 | Other | lineage4 | None | ERR4831117 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046897 | Sensitive | lineage4 | None | SRR6511621 | HR-TB | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | SRR6855695 | Sensitive | lineage4.8 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR4831638 | Sensitive | None | SRR6797274 | Sensitive | lineage4.1.2.1 | None | SRR7131091 | Sensitive | lineage4.1.2 | None | SRR6982059 | Sensitive | lineage4.1.2.1 | None | ERR502510 | Sensitive | lineage4 | None | SRR8217918 | HR-TB | None | SRR7496523 | Other | lineage4.7 | None | SRR7496471 | Sensitive | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | DRR184932 | Other | lineage2.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR323066 | Sensitive | lineage4 | None | SRR9971113 | Other | lineage2.2.1 | None | DRR184629 | Other | lineage2.2.1 | None | DRR185024 | Other | lineage2.2.2 | None | DRR188519 | Other | lineage4.4.2 | None | ERR067699 | HR-TB | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR1035122 | Sensitive | None | ERR1063883 | Sensitive | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR137286 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3283055 | HR-TB | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3445504 | HR-TB | None | ERR349265 | Sensitive | lineage4 | None | ERR349264 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349296 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR363490 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR373947 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR3797081 | Sensitive | lineage4 | None | ERR400320 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR3797046 | HR-TB | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR400326 | Sensitive | lineage4 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4024991 | Other | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR4769408 | Other | La1.3 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4769427 | Other | La1.2 | None | ERR4769452 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769552 | Other | La1.3 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4769516 | Other | La1.3 | None | ERR4769514 | Other | La1.3 | None | ERR4769518 | Sensitive | lineage4.9 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4769555 | Other | La1.3 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4797313 | HR-TB | None | ERR4797264 | Sensitive | None | ERR4798199 | Sensitive | lineage4.1.2.1 | in | ERR4798099 | Other | None | ERR4797474 | Other | None | ERR4799378 | Sensitive | lineage4 | None | ERR4799025 | Pre-XDR-TB | None | ERR4798431 | HR-TB | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4811493 | HR-TB | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4811030 | Sensitive | None | ERR4812155 | Sensitive | None | ERR5866199 | MDR-TB | lineage2.2.1 | None | ERR6358991 | HR-TB | None | ERR6358951 | HR-TB | lineage4 | None | ERR6358979 | Other | None | ERR6359070 | Other | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | ERR6359069 | Other | lineage4.9 | None | ERR6866022 | Other | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR6866410 | Sensitive | None | ERR752229 | Other | lineage4.5 | None | ERR736834 | Sensitive | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866639 | Other | None | ERR751326 | Sensitive | lineage4 | None | ERR9634265 | Sensitive | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | ERR9787336 | Other | lineage6 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR9787362 | Sensitive | lineage6 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR1158918 | Sensitive | lineage4 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1173568 | Other | lineage4.9 | None | SRR1173777 | Other | lineage4 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180996 | HR-TB | lineage4 | None |
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