EBG00000313339 - n.2448G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
102 Sensitive
2 RR-TB
39 HR-TB
12 MDR-TB
7 Pre-XDR-TB
2 XDR-TB
71 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 126 |
| lineage2.2.1 | 14 |
| La3;lineage4.9 | 7 |
| lineage1.1.2 | 3 |
| lineage4.4.1.2 | 1 |
| lineage4.6.2.2 | 3 |
| 7 | |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.3.4.2.1 | 3 |
| La1.8.1 | 3 |
| lineage4.8 | 4 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.2.1 | 1 |
| lineage4.3.2.1 | 1 |
| La1;lineage4.9 | 2 |
| lineage4.1.2 | 2 |
| lineage4.3.4.1 | 2 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage2.2.1;lineage4.1.2.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.2.BCG | 2 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| lineage4.8;lineage4.9 | 2 |
| lineage1.2.2.1 | 2 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage3.1;lineage9 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| La1.7 | 1 |
| lineage4.5 | 1 |
| lineage2.2.1.2 | 1 |
| La3;lineage4 | 1 |
| lineage1.2.1.2.1 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| La1.7;lineage4.9 | 5 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage1.1.3.1 | 1 |
| La3;lineage2.2.1 | 1 |
| M.canetti;lineage4.9 | 2 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage2.2;lineage4 | 1 |
| lineage2.1 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage1.1.1.1 | 1 |
| lineage3.1.3 | 1 |
| La1.6;La3;lineage4.9 | 1 |
| lineage4.3.4.2 | 1 |
| lineage6.1.3 | 1 |
| lineage6 | 1 |
| lineage3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage3;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| lineage4.1.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 235 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR323115 | Sensitive | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR5341366 | Sensitive | lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR4797201 | Other | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR4800341 | Other | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR3675389 | Other | lineage4.9 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR3797019 | Other | La1.8.1 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR10808399 | Sensitive | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | ERR3273109 | HR-TB | lineage4 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR926163 | Other | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR363499 | Sensitive | lineage4.9 | None | SRR5818448 | Other | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR6045158 | Other | lineage4.9 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR11488822 | Pre-XDR-TB | lineage2.2.1;lineage4.1.2.1 | None | ERR373947 | Other | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | SRR1173777 | Sensitive | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | ERR349296 | Sensitive | lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR234659 | Other | None | SRR8692893 | Other | lineage4.9 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR2100400 | MDR-TB | lineage1.2.2.1 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR970445 | MDR-TB | lineage2.2.1 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR137286 | Other | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | SRR3675222 | Other | La1.7 | None | ERR369162 | Other | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | SRR1173568 | Sensitive | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR6044875 | Sensitive | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR3283028 | Other | La3;lineage4 | None | SRR29772570 | Other | lineage4.9 | None | ERR1063896 | Sensitive | None | ERR369151 | Other | lineage4.9 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3256260 | Sensitive | lineage1.2.1.2.1 | ph | ERR3797048 | Other | La3;lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR323107 | Sensitive | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4821655 | HR-TB | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR6358991 | HR-TB | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR6511621 | Sensitive | lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR5341453 | Other | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR363502 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR3675246 | Other | lineage4.9 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR1915485 | Other | La1.2.BCG | None | ERR970413 | MDR-TB | lineage2.2.1 | None | ERR323085 | Sensitive | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR5341298 | Sensitive | lineage4.9 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | SRR1180996 | Sensitive | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR25827682 | Other | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR2516751 | MDR-TB | lineage1.2.2.1 | gb | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR8692863 | Other | lineage2.2;lineage4 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR4831618 | MDR-TB | lineage2.1 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR27450280 | Sensitive | lineage1.1.1.1 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | SRR26159043 | Other | lineage4.9 | None | SRR3675548 | Sensitive | lineage4.9 | None | SRR26159063 | RR-TB | lineage4.9 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | SRR5341303 | Sensitive | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR9786597 | Sensitive | lineage4.6.2.2 | None | ERR9787362 | Sensitive | lineage6 | None | ERR11081258 | Other | lineage4.8 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | ERR3797079 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | SRR7535082 | Sensitive | lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR12015084 | Other | lineage4.8 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR363498 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR1159378 | Other | lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR5341455 | Sensitive | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR11465351 | Sensitive | lineage4.1.2.1 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None |
|---|
