lineage | Count |
---|---|
34 | |
lineage4 | 61 |
lineage4.3.4 | 1 |
lineage1.1.3.1 | 1 |
lineage4.6.1.2 | 3 |
lineage6.1.3 | 1 |
lineage2.2.2 | 1 |
lineage4.8 | 3 |
lineage4.3.4.2 | 1 |
lineage4.6.2.2 | 2 |
lineage2.2.1 | 17 |
La1.8.1 | 4 |
lineage4.9 | 52 |
lineage3 | 5 |
lineage4.9;lineage2.2 | 1 |
lineage2.2 | 1 |
lineage2 | 1 |
lineage4.4.1.1.1 | 1 |
lineage4.2.1 | 1 |
La1.7.1 | 1 |
lineage4.4.2 | 1 |
lineage2.1 | 2 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage1.2.1.1 | 1 |
lineage3.1.3 | 1 |
lineage4.1 | 2 |
lineage1.1.2 | 2 |
lineage4.1.1.2 | 1 |
lineage4.3.4.2.1 | 2 |
lineage1.1.1 | 1 |
lineage4.9;lineage2.1 | 1 |
lineage2.2.1.1 | 2 |
lineage4.3.4.1 | 2 |
lineage4.1.2 | 2 |
lineage4.3.2.1 | 1 |
lineage4.3.3 | 1 |
lineage4.4.1.2 | 1 |
La1 | 1 |
lineage4;lineage3.1 | 1 |
La1.2 | 1 |
lineage4.9;La1.3 | 1 |
lineage4.1.2.1 | 1 |
lineage2.2.1.2 | 1 |
lineage3.1.2.1 | 1 |
spoligotype | Count |
---|---|
None | 223 |
ID | Drug resistance | Lineage | Country iso2 | ERR6866410 | Sensitive | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866639 | Other | None | ERR736848 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736834 | Sensitive | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR736875 | HR-TB | lineage4 | None | ERR751326 | Sensitive | lineage4 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR9992784 | Pre-XDR-TB | lineage2.2.2 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | ERR9786597 | Sensitive | lineage4.6.2.2 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR10808399 | Sensitive | lineage4 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR10808805 | Sensitive | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR11462861 | Other | La1.8.1 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1172717 | Other | lineage4.9 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173740 | Other | None | SRR1173568 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR14801749 | Sensitive | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR16157123 | Other | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR22424765 | MDR-TB | lineage4 | None | SRR20632814 | Sensitive | lineage4 | None | SRR20969542 | Other | lineage4.4.2 | None | ERR176778 | HR-TB | None | ERR176779 | HR-TB | None | ERR702405 | Sensitive | lineage2.1 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR3675246 | Sensitive | lineage4 | None | ERR176651 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | ERR4816470 | Other | lineage3 | None | ERR212138 | HR-TB | lineage4 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR2446566 | Other | lineage4.1 | None | ERR1750907 | RR-TB | None | ERR181824 | HR-TB | lineage4 | None | ERR181887 | HR-TB | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4818536 | Other | lineage4.9 | None | ERR4818607 | Sensitive | lineage4.9 | None | ERR4819051 | Other | lineage4 | None | ERR4818561 | HR-TB | lineage4 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341387 | Other | lineage4 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR5341396 | Other | lineage4 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341408 | Sensitive | lineage3 | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341425 | Other | lineage4 | None | ERR4819462 | Other | lineage4 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | ERR1023509 | Other | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341313 | HR-TB | None | SRR5341315 | Sensitive | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341467 | Other | lineage4 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR5341469 | Other | lineage4 | None | ERR4821057 | HR-TB | lineage4 | None | ERR4821655 | Sensitive | lineage4 | None | SRR6046151 | Sensitive | lineage4.9 | None | SRR6044780 | Other | lineage4.9 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR6045892 | Sensitive | None | SRR6045010 | Other | lineage4 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | ERR4831618 | MDR-TB | lineage2.1 | None | SRR6511621 | HR-TB | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR502510 | Sensitive | lineage4 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR323066 | Sensitive | lineage4 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323045 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR9971113 | Other | lineage2.2.1 | None | ERR323107 | Other | lineage4 | None | ERR323108 | HR-TB | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR067712 | HR-TB | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR1035122 | Sensitive | None | ERR1023525 | HR-TB | lineage4 | None | ERR1034634 | HR-TB | None | ERR1063862 | HR-TB | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR1063896 | Sensitive | None | ERR1063858 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063859 | HR-TB | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR137286 | Sensitive | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283010 | Other | La1 | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3283040 | HR-TB | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR3445503 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797019 | Other | La1.8.1 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR4024991 | Other | None | ERR473332 | Other | lineage4 | None | ERR405209 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4188247 | HR-TB | None | ERR4596902 | HR-TB | lineage3 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4797264 | Sensitive | None | ERR4797184 | Sensitive | lineage4 | None | ERR4798099 | Other | None | ERR4797474 | Other | None | ERR4799378 | Sensitive | lineage4 | None | ERR4798823 | HR-TB | lineage4 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR6358979 | Other | None | ERR6359045 | HR-TB | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR6866022 | Other | None |
---|