Rv0682 - c.342C>T
Drug resistance types
88 Sensitive
4 RR-TB
35 HR-TB
11 MDR-TB
6 Pre-XDR-TB
1 XDR-TB
43 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 104 |
| lineage2.2.1;lineage4.9 | 2 |
| La3;lineage4.9 | 8 |
| lineage3;lineage4.9 | 1 |
| lineage4.3.3 | 4 |
| lineage3 | 4 |
| lineage4.9;lineage7 | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage2.2.1 | 17 |
| lineage2;lineage4.9 | 1 |
| La1.8.1 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.8 | 1 |
| 2 | |
| lineage4.1.1.3 | 3 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.1.2.1 | 1 |
| lineage4 | 3 |
| lineage4.6.2.2 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.3.4 | 1 |
| lineage4.4.1.1.1 | 1 |
| La3;lineage4 | 1 |
| lineage4.1.2 | 1 |
| lineage1.1.2 | 2 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.3.2.1 | 3 |
| lineage1;lineage4.9 | 1 |
| lineage6.1.3 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage2.2.2 | 1 |
| La1;lineage4.9 | 2 |
| La1.7.1;lineage4.9 | 1 |
| lineage1.1.3.1 | 1 |
| lineage3;lineage4 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage2;lineage4 | 1 |
| lineage3.1.3 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.8.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.2.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La1;lineage4.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 188 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR29096873 | Sensitive | lineage4.9 | None | SRR1173777 | Sensitive | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR1180996 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | ERR3797079 | Sensitive | lineage4.9 | None | SRR1173281 | Other | lineage3 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR7535082 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | ERR502511 | Sensitive | lineage4.9 | None | SRR1159378 | Other | lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | SRR5341455 | Sensitive | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR10315466 | RR-TB | lineage2.2.1 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR13285068 | Sensitive | lineage4.9 | None | SRR29096935 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR16156817 | Other | lineage4.9 | None | SRR8692887 | Other | None | ERR11465665 | Other | lineage4.1.1.3 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR751326 | Other | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | SRR28351339 | MDR-TB | lineage4 | None | SRR27332350 | Sensitive | lineage3 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR26800473 | Sensitive | lineage3 | None | ERR2693252 | Sensitive | lineage4.9 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR4816322 | Other | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR323066 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR9634321 | Sensitive | lineage4.3.3 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR3283028 | Other | La3;lineage4 | None | ERR1063896 | Sensitive | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | ERR6358979 | Other | lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | ERR6866410 | Sensitive | lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798099 | Other | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR181887 | Other | lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR4821655 | HR-TB | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR10808399 | Sensitive | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR1173740 | Other | lineage3;lineage4 | None | ERR3797065 | RR-TB | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR5341298 | Sensitive | lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR1181351 | Sensitive | lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR181824 | HR-TB | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR4817915 | Other | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR16156775 | Other | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SRR6511621 | Sensitive | lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR9970978 | Sensitive | La1;lineage4.1.2 | None |
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